Wall clock time and date at job start Fri Apr 10 2020 17:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47329 * 104.10943 * 3 2 1 5 5 C 1.37105 * 119.99654 * 273.46313 * 4 3 2 6 6 H 1.08003 * 119.99882 * 186.89662 * 5 4 3 7 7 C 1.38946 * 120.00008 * 6.89361 * 5 4 3 8 8 N 1.31404 * 120.00257 * 24.21429 * 7 5 4 9 9 Si 1.86804 * 119.99815 * 204.21446 * 7 5 4 10 10 H 1.48498 * 109.47393 * 90.00045 * 9 7 5 11 11 H 1.48504 * 109.46816 * 210.00314 * 9 7 5 12 12 H 1.48504 * 109.47067 * 329.99846 * 9 7 5 13 13 C 1.34772 * 120.00368 * 93.45650 * 4 3 2 14 14 O 1.21290 * 120.00422 * 184.37154 * 13 4 3 15 15 C 1.50700 * 119.99802 * 4.37698 * 13 4 3 16 16 O 1.42905 * 109.70644 * 319.09397 * 15 13 4 17 17 C 1.53320 * 109.68712 * 79.63287 * 15 13 4 18 18 C 1.52725 * 108.42291 * 189.60867 * 17 15 13 19 19 C 1.50634 * 110.59208 * 308.88372 * 18 17 15 20 20 C 1.38905 * 117.76043 * 197.72584 * 19 18 17 21 21 C 1.37928 * 120.54940 * 180.25619 * 20 19 18 22 22 C 1.38268 * 119.77386 * 0.02562 * 21 20 19 23 23 C 1.37932 * 119.76623 * 359.88369 * 22 21 20 24 24 C 1.37668 * 122.55915 * 17.78477 * 19 18 17 25 25 C 1.50631 * 122.56336 * 359.25846 * 24 19 18 26 26 H 4.40642 * 5.51447 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.47250 * 344.10457 * 3 2 1 28 28 H 1.08997 * 109.47181 * 224.10618 * 3 2 1 29 29 H 0.97000 * 120.00504 * 180.02562 * 8 7 5 30 30 H 0.96698 * 114.00289 * 294.14297 * 16 15 13 31 31 H 1.09002 * 109.67589 * 69.86144 * 17 15 13 32 32 H 1.09000 * 109.68103 * 309.35486 * 17 15 13 33 33 H 1.09001 * 109.25622 * 69.16778 * 18 17 15 34 34 H 1.08998 * 109.25613 * 188.63550 * 18 17 15 35 35 H 1.08003 * 119.72677 * 0.23299 * 20 19 18 36 36 H 1.07998 * 120.11782 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.11898 * 179.85719 * 22 21 20 38 38 H 1.08007 * 119.72852 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.25326 * 138.07673 * 25 24 19 40 40 H 1.09005 * 109.25238 * 257.53744 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3376 -1.3395 5 6 3.2956 -0.6485 -2.2784 6 1 3.7591 -0.4204 -3.2269 7 6 2.8628 -1.9412 -2.0096 8 7 1.9122 -2.1454 -1.1257 9 14 3.6325 -3.3888 -2.9049 10 1 4.7996 -3.8849 -2.1324 11 1 2.6303 -4.4763 -3.0408 12 1 4.0792 -2.9561 -4.2534 13 6 3.4247 1.6167 -1.6490 14 8 3.7528 1.9077 -2.7799 15 6 3.3419 2.6856 -0.5899 16 8 2.1860 2.4706 0.2224 17 6 4.6015 2.6460 0.2835 18 6 4.3863 3.5666 1.4829 19 6 3.9244 4.9271 1.0304 20 6 4.0406 5.9812 1.9275 21 6 3.6305 7.2501 1.5751 22 6 3.0986 7.4757 0.3189 23 6 2.9841 6.4306 -0.5740 24 6 3.3991 5.1525 -0.2220 25 6 3.2574 4.0609 -1.2502 26 1 -1.0500 -0.0002 0.0000 27 1 3.0098 -0.9876 0.2815 28 1 3.0090 0.7387 0.7152 29 1 1.6104 -3.0479 -0.9377 30 1 1.3485 2.5798 -0.2484 31 1 5.4595 2.9899 -0.2941 32 1 4.7764 1.6272 0.6293 33 1 3.6329 3.1313 2.1395 34 1 5.3235 3.6694 2.0298 35 1 4.4552 5.8058 2.9092 36 1 3.7244 8.0647 2.2779 37 1 2.7736 8.4665 0.0380 38 1 2.5681 6.6074 -1.5549 39 1 2.2940 4.1609 -1.7501 40 1 4.0556 4.1548 -1.9865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370576174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:33 Heat of formation + Delta-G solvation = -2.821093 kcal Electronic energy + Delta-G solvation = -24788.288065 eV Core-core repulsion = 21341.406589 eV Total energy + Delta-G solvation = -3446.881476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 299.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77180 -40.13565 -37.88166 -37.20154 -35.00303 -33.82180 -33.24779 -32.99663 -30.91629 -29.59630 -28.25355 -26.88180 -24.85328 -23.85225 -22.99953 -21.34192 -20.39778 -19.68567 -18.68942 -18.26067 -17.27828 -16.92305 -16.73895 -16.27804 -15.90478 -15.70591 -15.62915 -15.23505 -15.12804 -14.86925 -14.06734 -13.97547 -13.91455 -13.81751 -13.48807 -13.45126 -13.10990 -12.82846 -12.78211 -12.43732 -12.39720 -12.22504 -12.14313 -11.83006 -11.65641 -11.19104 -11.14886 -10.87859 -10.45902 -10.00052 -9.89358 -9.58140 -9.36115 -8.32290 -5.90010 0.53031 0.55728 1.32806 1.41070 1.51841 1.83346 2.14005 2.38035 2.56791 2.91080 2.97699 3.07966 3.21233 3.65614 3.79911 3.93469 4.04625 4.09109 4.10623 4.20239 4.28617 4.41677 4.54436 4.57477 4.71781 4.81591 4.91388 4.93128 5.01616 5.03698 5.09561 5.20105 5.23386 5.37262 5.45473 5.55094 5.66020 5.68705 5.83966 5.97067 6.20925 6.37067 6.59116 7.12204 7.30268 7.42642 7.96431 8.60413 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.004432 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.226457 B = 6315.690301 C = 6585.646236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.115 4.115 3 C 0.238 3.762 4 N -0.434 5.434 5 C -0.360 4.360 6 H 0.075 0.925 7 C 0.008 3.992 8 N -0.860 5.860 9 Si 0.981 3.019 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.278 1.278 13 C 0.406 3.594 14 O -0.632 6.632 15 C 0.144 3.856 16 O -0.535 6.535 17 C -0.102 4.102 18 C -0.064 4.064 19 C -0.078 4.078 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.083 4.083 25 C -0.082 4.082 26 H 0.226 0.774 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.273 0.727 30 H 0.377 0.623 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 13.070 9.933 16.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.116 4.116 3 C 0.116 3.884 4 N -0.150 5.150 5 C -0.487 4.487 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.496 5.496 9 Si 0.805 3.195 10 H -0.190 1.190 11 H -0.201 1.201 12 H -0.204 1.204 13 C 0.195 3.805 14 O -0.520 6.520 15 C 0.100 3.900 16 O -0.341 6.341 17 C -0.140 4.140 18 C -0.101 4.101 19 C -0.078 4.078 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.083 4.083 25 C -0.119 4.119 26 H 0.243 0.757 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.219 12.892 9.942 16.430 hybrid contribution -0.602 -1.074 -1.573 1.998 sum 1.617 11.818 8.368 14.571 Atomic orbital electron populations 1.24912 0.96148 1.06322 1.01712 1.23100 0.94499 0.95407 0.98639 1.18507 0.85170 1.00984 0.83731 1.43969 1.54118 1.05575 1.11340 1.19635 1.40457 0.88798 0.99856 0.90677 1.25920 0.94828 1.00476 0.98420 1.70231 1.22322 1.22794 1.34274 0.85131 0.78494 0.77413 0.78458 1.18997 1.20102 1.20355 1.21522 0.84852 0.84169 0.89926 1.90475 1.55632 1.81781 1.24137 1.20945 0.88975 0.91039 0.89008 1.86525 1.15363 1.92865 1.39372 1.21607 0.94020 1.01427 0.96959 1.20331 1.02510 0.90625 0.96630 1.19769 0.98531 0.96234 0.93261 1.21400 1.00676 0.92438 0.99830 1.21396 0.98558 0.97425 0.96911 1.21315 0.99913 0.99271 0.94125 1.21302 1.00960 0.92462 1.00467 1.19488 1.00005 0.94279 0.94533 1.20750 1.02812 0.91650 0.96727 0.75748 0.90483 0.87312 0.91655 0.77399 0.90562 0.90732 0.89456 0.88331 0.83993 0.83502 0.83985 0.85984 0.91301 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.05 19.25 74.32 1.43 -9.62 16 2 C -0.11 -5.12 9.29 31.12 0.29 -4.84 16 3 C 0.24 10.72 4.63 84.57 0.39 11.11 16 4 N -0.43 -22.19 2.59 -645.42 -1.67 -23.86 16 5 C -0.36 -20.40 9.42 84.04 0.79 -19.61 16 6 H 0.08 4.62 7.31 -2.91 -0.02 4.60 16 7 C 0.01 0.42 4.95 84.93 0.42 0.85 16 8 N -0.86 -44.43 8.90 21.66 0.19 -44.23 16 9 Si 0.98 42.03 29.62 68.60 2.03 44.06 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 13 C 0.41 19.83 6.63 87.66 0.58 20.41 16 14 O -0.63 -35.79 15.43 -3.06 -0.05 -35.84 16 15 C 0.14 5.31 0.54 -11.50 -0.01 5.30 16 16 O -0.53 -18.39 7.75 -148.98 -1.15 -19.55 16 17 C -0.10 -3.22 4.72 30.61 0.14 -3.08 16 18 C -0.06 -1.59 5.28 29.74 0.16 -1.43 16 19 C -0.08 -2.02 5.68 -19.86 -0.11 -2.13 16 20 C -0.13 -2.62 9.61 22.36 0.21 -2.41 16 21 C -0.13 -2.35 10.05 22.20 0.22 -2.13 16 22 C -0.13 -2.62 10.05 22.20 0.22 -2.40 16 23 C -0.13 -3.37 9.61 22.36 0.21 -3.16 16 24 C -0.08 -2.39 5.62 -19.86 -0.11 -2.51 16 25 C -0.08 -2.80 4.25 29.76 0.13 -2.67 16 26 H 0.23 7.27 7.80 -4.42 -0.03 7.23 16 27 H 0.08 3.73 6.41 -2.38 -0.02 3.71 16 28 H 0.11 4.29 4.27 -2.39 -0.01 4.28 16 29 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.38 12.72 8.45 -74.06 -0.63 12.09 16 31 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 32 H 0.07 2.39 6.95 -2.39 -0.02 2.37 16 33 H 0.09 2.19 7.73 -2.39 -0.02 2.17 16 34 H 0.10 1.91 8.12 -2.39 -0.02 1.89 16 35 H 0.14 2.22 8.05 -2.91 -0.02 2.20 16 36 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.12 2.85 8.05 -2.91 -0.02 2.82 16 39 H 0.07 2.38 8.12 -2.39 -0.02 2.36 16 40 H 0.08 2.88 7.55 -2.38 -0.02 2.86 16 Total: -1.00 -67.31 326.56 4.77 -62.54 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.44 Total: 35.21 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.98 Total: -18.32 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -1.48 Total: -68.10 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -1.20 Total: -55.39 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -67.31 4.77 -62.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370576174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.717 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds