Wall clock time and date at job start Fri Apr 10 2020 17:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 C 1.50700 * 109.46831 * 239.99683 * 2 1 3 5 5 H 1.07997 * 119.99735 * 239.99696 * 4 2 1 6 6 C 1.37873 * 120.00025 * 60.00379 * 4 2 1 7 7 N 1.31519 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99999 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47077 * 89.99865 * 8 6 4 10 10 H 1.48497 * 109.47581 * 209.99813 * 8 6 4 11 11 H 1.48507 * 109.46961 * 330.00237 * 8 6 4 12 12 N 1.46499 * 109.46802 * 119.99898 * 2 1 3 13 13 S 1.65606 * 119.99673 * 215.67864 * 12 2 1 14 14 O 1.42102 * 106.40091 * 312.05806 * 13 12 2 15 15 O 1.42101 * 106.40092 * 179.13797 * 13 12 2 16 16 C 1.76193 * 107.21868 * 65.59637 * 13 12 2 17 17 C 1.34857 * 125.96252 * 156.16778 * 16 13 12 18 18 N 1.36310 * 106.68744 * 179.97438 * 17 16 13 19 19 C 1.35486 * 107.38512 * 0.03196 * 18 17 16 20 20 N 1.30028 * 108.62329 * 359.97072 * 19 18 17 21 21 C 1.51039 * 123.93642 * 179.83839 * 19 18 17 22 22 C 1.53401 * 108.24981 * 344.11969 * 21 19 18 23 23 C 1.53152 * 109.23726 * 48.79656 * 22 21 19 24 24 C 1.46482 * 127.77707 * 180.02562 * 18 17 16 25 25 H 1.09004 * 109.47214 * 53.66110 * 1 2 3 26 26 H 1.09000 * 109.47431 * 173.65808 * 1 2 3 27 27 H 1.08995 * 109.47373 * 293.66288 * 1 2 3 28 28 H 0.96994 * 119.99953 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00006 * 35.67593 * 12 2 1 30 30 H 1.08001 * 126.65741 * 359.96616 * 17 16 13 31 31 H 1.08999 * 109.71697 * 224.41479 * 21 19 18 32 32 H 1.09000 * 109.71037 * 103.81824 * 21 19 18 33 33 H 1.09002 * 109.50681 * 168.72344 * 22 21 19 34 34 H 1.08997 * 109.50994 * 288.86618 * 22 21 19 35 35 H 1.08999 * 109.46956 * 50.52021 * 23 22 21 36 36 H 1.09001 * 109.46667 * 170.50889 * 23 22 21 37 37 H 1.08998 * 109.57870 * 43.06529 * 24 18 17 38 38 H 1.08997 * 109.58546 * 282.65057 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 1.3446 -2.1618 -4.4123 10 1 2.4872 -0.1406 -5.1121 11 1 3.6308 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1962 13 16 3.3926 -0.1623 1.9542 14 8 4.3682 0.0172 0.9367 15 8 3.5859 -1.0148 3.0746 16 6 3.0482 1.4398 2.6015 17 6 3.6834 2.0299 3.6345 18 7 3.1066 3.2537 3.8010 19 6 2.1352 3.3742 2.8643 20 7 2.1075 2.2865 2.1524 21 6 1.2540 4.5918 2.7152 22 6 1.3710 5.4292 3.9952 23 6 2.8510 5.6165 4.3420 24 6 3.4434 4.2768 4.7937 25 1 -0.3634 0.6090 -0.8278 26 1 -0.3634 -1.0214 -0.1135 27 1 -0.3634 0.4124 0.9412 28 1 0.7088 1.1611 -3.4845 29 1 1.5365 -1.4572 1.5442 30 1 4.4920 1.6136 4.2170 31 1 0.2189 4.2814 2.5723 32 1 1.5827 5.1809 1.8591 33 1 0.9081 6.4032 3.8366 34 1 0.8675 4.9150 4.8139 35 1 3.3876 5.9740 3.4632 36 1 2.9460 6.3454 5.1470 37 1 4.5268 4.3652 4.8741 38 1 3.0247 3.9992 5.7610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376841753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:39 Heat of formation + Delta-G solvation = -22.025591 kcal Electronic energy + Delta-G solvation = -22900.238387 eV Core-core repulsion = 19484.427750 eV Total energy + Delta-G solvation = -3415.810637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31567 -36.80234 -36.36783 -35.16643 -35.02307 -33.37688 -31.91783 -30.06554 -28.71025 -28.06585 -24.96765 -24.65084 -22.50638 -22.08573 -20.70698 -19.28812 -18.51125 -17.43746 -16.67757 -16.25811 -16.19037 -15.63960 -15.14890 -14.65593 -14.49862 -14.28091 -14.07133 -13.87038 -13.59580 -13.29026 -12.63502 -12.18645 -12.04957 -11.51146 -11.43200 -11.39048 -11.30240 -11.19729 -11.15520 -10.92517 -10.89155 -10.71293 -10.28928 -10.09826 -9.90044 -9.74977 -9.68660 -9.42265 -8.56443 -8.25271 -7.98916 -5.86497 -3.90805 1.30550 1.81081 2.61841 2.91520 3.42494 3.48152 3.55691 3.81585 4.09255 4.26758 4.34238 4.42265 4.46084 4.58933 4.76274 4.86645 4.99623 5.07227 5.27344 5.37719 5.43395 5.45064 5.54792 5.65797 5.75979 5.84752 6.13199 6.41275 6.64585 7.02317 7.06060 7.08893 7.31631 7.82032 7.85942 8.00322 8.15891 8.34682 8.48586 9.11098 9.73320 11.19039 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.005104 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.748045 B = 5484.389515 C = 6319.863596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.276 3.724 3 H 0.059 0.941 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -1.092 6.092 13 S 2.722 3.278 14 O -0.945 6.945 15 O -0.990 6.990 16 C -0.542 4.542 17 C 0.051 3.949 18 N -0.454 5.454 19 C 0.204 3.796 20 N -0.395 5.395 21 C -0.034 4.034 22 C -0.125 4.125 23 C -0.136 4.136 24 C 0.099 3.901 25 H 0.089 0.911 26 H 0.029 0.971 27 H 0.015 0.985 28 H 0.260 0.740 29 H 0.403 0.597 30 H 0.187 0.813 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.243 11.184 16.509 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.172 3.828 3 H 0.077 0.923 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.853 5.853 13 S 2.805 3.195 14 O -0.935 6.935 15 O -0.979 6.979 16 C -0.751 4.751 17 C -0.089 4.089 18 N -0.136 5.136 19 C -0.062 4.062 20 N -0.112 5.112 21 C -0.073 4.073 22 C -0.163 4.163 23 C -0.173 4.173 24 C -0.023 4.023 25 H 0.107 0.893 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.236 0.764 30 H 0.204 0.796 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.560 11.027 15.822 19.349 hybrid contribution 0.350 0.020 0.173 0.390 sum 1.910 11.048 15.995 19.533 Atomic orbital electron populations 1.21960 0.97775 1.00169 0.99807 1.18594 0.91911 0.92716 0.79604 0.92295 1.21589 1.30783 1.12823 0.90536 0.92062 1.24871 0.95137 0.95082 0.98835 1.69896 1.37151 1.22927 1.23324 0.86561 0.79386 0.79302 0.82554 1.20849 1.21323 1.19752 1.55307 1.47260 1.42268 1.40458 1.01136 0.73749 0.71993 0.72581 1.93618 1.57684 1.85724 1.56457 1.93516 1.86018 1.64204 1.54202 1.33953 1.07195 1.24334 1.09655 1.22280 1.00816 0.86063 0.99726 1.45664 1.27646 1.13718 1.26606 1.23697 0.93968 0.98319 0.90178 1.70271 1.17943 0.99631 1.23309 1.20235 0.98731 0.89655 0.98708 1.21694 0.95821 1.01046 0.97775 1.21923 0.96952 0.95353 1.03121 1.22085 1.01960 0.87180 0.91107 0.89291 0.95146 0.96546 0.93061 0.76412 0.79610 0.88170 0.88843 0.89781 0.91122 0.90344 0.89207 0.88945 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.12 37.16 0.34 -3.00 16 2 C 0.28 7.14 2.65 -69.08 -0.18 6.96 16 3 H 0.06 1.66 6.91 -51.93 -0.36 1.30 16 4 C -0.52 -14.90 8.84 -34.44 -0.30 -15.20 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.98 11.39 55.43 0.63 -25.35 16 8 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 12 N -1.09 -24.28 5.45 -5.88 -0.03 -24.31 16 13 S 2.72 58.19 5.77 -107.50 -0.62 57.57 16 14 O -0.95 -23.78 17.76 -57.17 -1.02 -24.80 16 15 O -0.99 -20.86 18.00 -57.17 -1.03 -21.89 16 16 C -0.54 -10.51 7.00 -17.67 -0.12 -10.64 16 17 C 0.05 0.79 11.55 -16.76 -0.19 0.59 16 18 N -0.45 -6.02 3.14 -113.73 -0.36 -6.37 16 19 C 0.20 3.17 7.65 -155.23 -1.19 1.99 16 20 N -0.39 -7.87 10.12 -9.83 -0.10 -7.97 16 21 C -0.03 -0.38 6.33 -27.51 -0.17 -0.56 16 22 C -0.13 -0.89 5.96 -26.44 -0.16 -1.05 16 23 C -0.14 -0.85 5.94 -26.50 -0.16 -1.00 16 24 C 0.10 0.77 6.98 -3.90 -0.03 0.74 16 25 H 0.09 2.35 6.27 -51.93 -0.33 2.02 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.40 7.87 8.84 -34.48 -0.30 7.56 16 30 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 35 H 0.08 0.55 8.12 -51.93 -0.42 0.12 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -37.27 327.38 -10.05 -47.33 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.18 Total: 3.02 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.26 Total: -19.48 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: 0.14 Total: -64.00 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -2.04 Total: -46.69 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 58.19 SS G_CDS: -0.62 Total: 57.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -37.27 -10.05 -47.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376841753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.301 kcal (2) G-P(sol) polarization free energy of solvation -37.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds