Wall clock time and date at job start Fri Apr 10 2020 17:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47003 * 2 1 4 4 C 1.50700 * 109.46831 * 239.99683 * 2 1 3 5 5 H 1.07997 * 119.99735 * 239.99696 * 4 2 1 6 6 C 1.37873 * 120.00025 * 60.00379 * 4 2 1 7 7 N 1.31519 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99999 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47077 * 89.99865 * 8 6 4 10 10 H 1.48497 * 109.47581 * 209.99813 * 8 6 4 11 11 H 1.48507 * 109.46961 * 330.00237 * 8 6 4 12 12 N 1.46499 * 109.46802 * 119.99898 * 2 1 3 13 13 S 1.65606 * 119.99673 * 215.67864 * 12 2 1 14 14 O 1.42102 * 106.40091 * 312.05806 * 13 12 2 15 15 O 1.42101 * 106.40092 * 179.13797 * 13 12 2 16 16 C 1.76193 * 107.21868 * 65.59637 * 13 12 2 17 17 C 1.34857 * 125.96252 * 156.16778 * 16 13 12 18 18 N 1.36310 * 106.68744 * 179.97438 * 17 16 13 19 19 C 1.35486 * 107.38512 * 0.03196 * 18 17 16 20 20 N 1.30028 * 108.62329 * 359.97072 * 19 18 17 21 21 C 1.51039 * 123.93642 * 179.83839 * 19 18 17 22 22 C 1.53401 * 108.24981 * 344.11969 * 21 19 18 23 23 C 1.53152 * 109.23726 * 48.79656 * 22 21 19 24 24 C 1.46482 * 127.77707 * 180.02562 * 18 17 16 25 25 H 1.09004 * 109.47214 * 53.66110 * 1 2 3 26 26 H 1.09000 * 109.47431 * 173.65808 * 1 2 3 27 27 H 1.08995 * 109.47373 * 293.66288 * 1 2 3 28 28 H 0.96994 * 119.99953 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00006 * 35.67593 * 12 2 1 30 30 H 1.08001 * 126.65741 * 359.96616 * 17 16 13 31 31 H 1.08999 * 109.71697 * 224.41479 * 21 19 18 32 32 H 1.09000 * 109.71037 * 103.81824 * 21 19 18 33 33 H 1.09002 * 109.50681 * 168.72344 * 22 21 19 34 34 H 1.08997 * 109.50994 * 288.86618 * 22 21 19 35 35 H 1.08999 * 109.46956 * 50.52021 * 23 22 21 36 36 H 1.09001 * 109.46667 * 170.50889 * 23 22 21 37 37 H 1.08998 * 109.57870 * 43.06529 * 24 18 17 38 38 H 1.08997 * 109.58546 * 282.65057 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 1.3446 -2.1618 -4.4123 10 1 2.4872 -0.1406 -5.1121 11 1 3.6308 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1962 13 16 3.3926 -0.1623 1.9542 14 8 4.3682 0.0172 0.9367 15 8 3.5859 -1.0148 3.0746 16 6 3.0482 1.4398 2.6015 17 6 3.6834 2.0299 3.6345 18 7 3.1066 3.2537 3.8010 19 6 2.1352 3.3742 2.8643 20 7 2.1075 2.2865 2.1524 21 6 1.2540 4.5918 2.7152 22 6 1.3710 5.4292 3.9952 23 6 2.8510 5.6165 4.3420 24 6 3.4434 4.2768 4.7937 25 1 -0.3634 0.6090 -0.8278 26 1 -0.3634 -1.0214 -0.1135 27 1 -0.3634 0.4124 0.9412 28 1 0.7088 1.1611 -3.4845 29 1 1.5365 -1.4572 1.5442 30 1 4.4920 1.6136 4.2170 31 1 0.2189 4.2814 2.5723 32 1 1.5827 5.1809 1.8591 33 1 0.9081 6.4032 3.8366 34 1 0.8675 4.9150 4.8139 35 1 3.3876 5.9740 3.4632 36 1 2.9460 6.3454 5.1470 37 1 4.5268 4.3652 4.8741 38 1 3.0247 3.9992 5.7610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376841753.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:38 Heat of formation + Delta-G solvation = -50.413084 kcal Electronic energy + Delta-G solvation = -22901.469361 eV Core-core repulsion = 19484.427750 eV Total energy + Delta-G solvation = -3417.041612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.44514 -38.13418 -37.57146 -37.13178 -36.82471 -34.36907 -34.01203 -31.02718 -30.10779 -29.65250 -27.13832 -25.45618 -23.45662 -23.22135 -22.73799 -20.25187 -20.08220 -18.73908 -18.57798 -17.89280 -17.27990 -17.15131 -16.86100 -16.34294 -15.54662 -15.25198 -15.11014 -15.02671 -14.71128 -14.64805 -14.38655 -13.95428 -13.20083 -13.18179 -13.02697 -12.97723 -12.90927 -12.72448 -12.54335 -12.26033 -12.11412 -12.06020 -12.04263 -11.91658 -11.86773 -11.45171 -11.09528 -10.78392 -10.43209 -9.95839 -9.79965 -8.04573 -6.16696 -0.34372 0.61576 1.42915 1.44874 1.56039 1.63552 1.67666 2.18824 2.49600 2.79514 3.22494 3.31264 3.55423 3.63310 3.78934 3.87559 3.95511 4.21445 4.31417 4.39688 4.45128 4.72291 4.81793 4.85846 4.93387 5.00764 5.05383 5.11448 5.13313 5.23496 5.27357 5.30003 5.68461 5.82869 6.06114 6.06791 6.34164 6.52304 6.80397 6.89858 7.50454 8.99429 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.018943 B = 0.005104 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.748045 B = 5484.389515 C = 6319.863596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.284 3.716 3 H 0.033 0.967 4 C -0.543 4.543 5 H 0.049 0.951 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.278 1.278 12 N -1.095 6.095 13 S 2.741 3.259 14 O -0.994 6.994 15 O -0.991 6.991 16 C -0.585 4.585 17 C 0.068 3.932 18 N -0.445 5.445 19 C 0.200 3.800 20 N -0.452 5.452 21 C -0.040 4.040 22 C -0.117 4.117 23 C -0.132 4.132 24 C 0.085 3.915 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.263 0.737 29 H 0.413 0.587 30 H 0.223 0.777 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 12.792 18.476 22.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.178 3.822 3 H 0.051 0.949 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.777 3.223 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.203 1.203 12 N -0.856 5.856 13 S 2.829 3.171 14 O -0.984 6.984 15 O -0.981 6.981 16 C -0.797 4.797 17 C -0.076 4.076 18 N -0.125 5.125 19 C -0.067 4.067 20 N -0.169 5.169 21 C -0.079 4.079 22 C -0.155 4.155 23 C -0.169 4.169 24 C -0.035 4.035 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.248 0.752 30 H 0.239 0.761 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.749 12.601 17.800 21.878 hybrid contribution 0.303 -0.361 -0.314 0.566 sum 2.051 12.239 17.485 21.442 Atomic orbital electron populations 1.21759 0.96653 1.00091 0.99854 1.18249 0.92632 0.91315 0.79956 0.94914 1.21895 1.31183 1.12940 0.92267 0.93238 1.25605 0.95327 0.95833 1.01493 1.70003 1.37537 1.23662 1.24084 0.85667 0.78730 0.78636 0.79276 1.19301 1.20502 1.20341 1.55083 1.47314 1.43048 1.40165 1.00118 0.72652 0.72477 0.71857 1.93552 1.59518 1.86804 1.58477 1.93498 1.85956 1.65045 1.53565 1.33236 1.10035 1.23954 1.12491 1.22823 1.00261 0.86397 0.98070 1.46010 1.26102 1.13780 1.26558 1.24404 0.94417 0.98199 0.89660 1.70154 1.19513 1.01570 1.25693 1.20492 0.97522 0.88624 1.01232 1.21704 0.97019 1.01341 0.95455 1.21984 0.95728 0.95141 1.04094 1.22670 1.03883 0.86341 0.90564 0.91513 0.94616 0.94624 0.92775 0.75230 0.76062 0.88713 0.88888 0.87326 0.90657 0.91188 0.85521 0.86675 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.15 9.12 71.98 0.66 -5.49 16 2 C 0.28 15.21 2.65 44.25 0.12 15.33 16 3 H 0.03 1.94 6.91 -2.39 -0.02 1.93 16 4 C -0.54 -32.19 8.84 25.60 0.23 -31.97 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.02 0.98 5.30 84.65 0.45 1.42 16 7 N -0.91 -54.11 11.39 21.45 0.24 -53.87 16 8 Si 0.95 46.36 29.54 68.60 2.03 48.38 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 12 N -1.10 -50.32 5.45 -172.52 -0.94 -51.26 16 13 S 2.74 120.60 5.77 -56.49 -0.33 120.28 16 14 O -0.99 -52.19 17.76 -128.00 -2.27 -54.47 16 15 O -0.99 -41.99 18.00 -128.00 -2.30 -44.29 16 16 C -0.58 -22.95 7.00 83.54 0.58 -22.37 16 17 C 0.07 1.98 11.55 83.22 0.96 2.95 16 18 N -0.44 -10.78 3.14 -513.74 -1.61 -12.40 16 19 C 0.20 6.11 7.65 138.23 1.06 7.16 16 20 N -0.45 -18.40 10.12 -185.00 -1.87 -20.27 16 21 C -0.04 -0.84 6.33 30.09 0.19 -0.65 16 22 C -0.12 -1.28 5.96 30.78 0.18 -1.09 16 23 C -0.13 -1.09 5.94 30.74 0.18 -0.91 16 24 C 0.08 0.97 6.98 86.48 0.60 1.57 16 25 H 0.07 3.61 6.27 -2.39 -0.01 3.59 16 26 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.41 16.59 8.84 -96.75 -0.86 15.73 16 30 H 0.22 4.55 8.06 -2.91 -0.02 4.53 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 35 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 36 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.63 327.38 -1.62 -85.25 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.22 Total: 16.69 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 5.21 Total: -34.04 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -4.18 Total: -137.80 kcal Atomic # 8 Polarization: -94.18 SS G_CDS: -4.58 Total: -98.76 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 16 Polarization: 120.60 SS G_CDS: -0.33 Total: 120.28 kcal Total: -83.63 -1.62 -85.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376841753.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.833 kcal (2) G-P(sol) polarization free energy of solvation -83.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds