Wall clock time and date at job start Fri Apr 10 2020 17:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40085 * 126.03816 * 2 1 4 4 C 1.30841 * 108.20773 * 179.85105 * 3 2 1 5 5 C 1.39866 * 108.19911 * 0.40256 * 4 3 2 6 6 C 1.34944 * 126.03675 * 180.29997 * 2 1 3 7 7 S 1.76196 * 126.13085 * 359.96534 * 6 2 1 8 8 O 1.42100 * 106.40638 * 203.53900 * 7 6 2 9 9 O 1.42109 * 106.40031 * 336.45727 * 7 6 2 10 10 N 1.65596 * 107.22090 * 89.99412 * 7 6 2 11 11 C 1.46920 * 120.63090 * 90.00505 * 10 7 6 12 12 C 1.53192 * 108.77680 * 126.37034 * 11 10 7 13 13 C 1.53039 * 109.31537 * 54.63349 * 12 11 10 14 14 C 1.53034 * 109.53714 * 298.63823 * 13 12 11 15 15 H 1.09008 * 109.49585 * 301.41054 * 14 13 12 16 16 C 1.50701 * 109.49716 * 181.34632 * 14 13 12 17 17 H 1.08001 * 120.00086 * 239.99618 * 16 14 13 18 18 C 1.37877 * 119.99762 * 59.99710 * 16 14 13 19 19 N 1.31515 * 120.00505 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99903 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47096 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46940 * 120.00181 * 20 18 16 23 23 H 1.48499 * 109.47386 * 240.00181 * 20 18 16 24 24 C 1.46934 * 120.62911 * 269.72323 * 10 7 6 25 25 H 1.09002 * 109.47391 * 269.69466 * 1 2 3 26 26 H 1.09001 * 109.46813 * 149.69523 * 1 2 3 27 27 H 1.09004 * 109.47041 * 29.69650 * 1 2 3 28 28 H 1.08002 * 125.90099 * 180.14088 * 4 3 2 29 29 H 1.07998 * 126.04130 * 179.74193 * 5 4 3 30 30 H 1.08999 * 109.58680 * 246.15564 * 11 10 7 31 31 H 1.09004 * 109.58778 * 6.57873 * 11 10 7 32 32 H 1.09011 * 109.49737 * 174.58627 * 12 11 10 33 33 H 1.08998 * 109.49954 * 294.68114 * 12 11 10 34 34 H 1.09011 * 109.45765 * 58.65499 * 13 12 11 35 35 H 1.09002 * 109.45899 * 178.62663 * 13 12 11 36 36 H 0.96991 * 120.00528 * 179.97438 * 19 18 16 37 37 H 1.08990 * 109.58808 * 353.41688 * 24 10 7 38 38 H 1.09006 * 109.58235 * 113.84515 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 0.0032 5 6 3.5437 -0.6665 -0.0039 6 6 2.2589 -1.0912 -0.0057 7 16 1.7193 -2.7685 -0.0136 8 8 2.7863 -3.5359 0.5265 9 8 0.4069 -2.7704 0.5315 10 7 1.5682 -3.2274 -1.5975 11 6 2.7034 -3.8221 -2.3161 12 6 2.2582 -5.1561 -2.9235 13 6 1.0162 -4.9292 -3.7884 14 6 -0.1219 -4.3908 -2.9183 15 1 -0.3360 -5.1007 -2.1193 16 6 -1.3542 -4.1989 -3.7643 17 1 -1.7975 -3.2185 -3.8581 18 6 -1.9158 -5.2749 -4.4184 19 7 -1.3763 -6.4689 -4.3037 20 14 -3.4437 -5.0372 -5.4664 21 1 -3.8509 -3.6096 -5.4312 22 1 -3.1497 -5.4332 -6.8671 23 1 -4.5448 -5.8798 -4.9346 24 6 0.2946 -3.0533 -2.3092 25 1 -0.3634 -0.0055 1.0276 26 1 -0.3633 -0.8873 -0.5186 27 1 -0.3633 0.8927 -0.5091 28 1 4.4055 1.3710 0.0062 29 1 4.4211 -1.2963 -0.0074 30 1 3.0264 -3.1488 -3.1101 31 1 3.5262 -3.9931 -1.6219 32 1 3.0612 -5.5615 -3.5393 33 1 2.0217 -5.8588 -2.1246 34 1 1.2465 -4.2076 -4.5723 35 1 0.7117 -5.8727 -4.2413 36 1 -1.7716 -7.2259 -4.7635 37 1 -0.4714 -2.7172 -1.6105 38 1 0.4172 -2.3160 -3.1026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397676544.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:55 Heat of formation + Delta-G solvation = -15.799802 kcal Electronic energy + Delta-G solvation = -23284.447523 eV Core-core repulsion = 19868.906856 eV Total energy + Delta-G solvation = -3415.540667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27876 -39.36222 -38.62721 -37.15112 -35.22121 -34.34789 -32.77543 -31.90653 -31.60991 -27.83970 -27.04104 -25.26278 -23.46540 -23.27092 -22.37095 -21.21111 -19.84440 -19.05477 -18.70732 -18.09011 -17.09124 -16.62554 -16.54314 -16.45832 -15.54637 -15.21617 -15.05846 -14.96069 -14.76546 -14.47225 -14.36219 -13.96735 -13.76783 -13.62433 -13.42179 -13.14361 -12.97016 -12.82989 -12.71932 -12.68562 -12.50351 -11.93996 -11.85122 -11.79089 -11.57993 -11.13086 -10.91660 -10.74727 -10.40855 -9.91762 -9.84331 -8.05659 -6.20184 -0.94053 0.12230 1.30647 1.43469 1.46538 1.53049 1.56421 1.88527 2.45577 2.51775 3.07575 3.22137 3.51806 3.77525 4.08205 4.23571 4.27984 4.28418 4.34262 4.41015 4.54238 4.56385 4.62877 4.72146 4.78758 4.87473 4.95148 5.08448 5.27999 5.35080 5.49400 5.51999 5.57667 5.66645 5.71623 6.00076 6.18584 6.34312 6.39297 6.91769 7.48154 8.98531 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.004996 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.161154 B = 5603.376052 C = 6210.885229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.320 5.320 3 N -0.284 5.284 4 C 0.034 3.966 5 C -0.158 4.158 6 C -0.503 4.503 7 S 2.718 3.282 8 O -0.960 6.960 9 O -0.972 6.972 10 N -0.988 5.988 11 C 0.119 3.881 12 C -0.127 4.127 13 C -0.106 4.106 14 C 0.036 3.964 15 H -0.007 1.007 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.015 3.985 19 N -0.915 5.915 20 Si 0.952 3.048 21 H -0.264 1.264 22 H -0.282 1.282 23 H -0.286 1.286 24 C 0.134 3.866 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.234 0.766 29 H 0.187 0.813 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.260 0.740 37 H 0.078 0.922 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.433 11.707 5.505 16.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.104 5.104 3 N -0.109 5.109 4 C -0.150 4.150 5 C -0.190 4.190 6 C -0.713 4.713 7 S 2.805 3.195 8 O -0.949 6.949 9 O -0.962 6.962 10 N -0.828 5.828 11 C -0.006 4.006 12 C -0.167 4.167 13 C -0.144 4.144 14 C 0.015 3.985 15 H 0.011 0.989 16 C -0.570 4.570 17 H 0.079 0.921 18 C -0.183 4.183 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.212 1.212 24 C 0.010 3.990 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.250 0.750 29 H 0.204 0.796 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.302 12.067 6.201 16.450 hybrid contribution -0.398 -0.442 -0.819 1.012 sum 8.904 11.625 5.383 15.601 Atomic orbital electron populations 1.22553 0.72000 1.06401 1.05861 1.48476 1.07263 1.01635 1.53047 1.77217 1.03305 1.09407 1.21020 1.24789 0.95759 0.95054 0.99411 1.22032 0.95421 0.96389 1.05174 1.33738 1.01603 1.16501 1.19473 1.01247 0.72829 0.72736 0.72676 1.93557 1.57340 1.67049 1.76943 1.93553 1.38613 1.87005 1.77065 1.57539 1.19901 1.74607 1.30755 1.21703 0.86665 0.94788 0.97400 1.21898 0.98808 0.96566 0.99388 1.21416 0.93762 1.01644 0.97563 1.18842 0.93813 0.91768 0.94033 0.98920 1.21499 1.11290 0.94939 1.29239 0.92052 1.25681 0.99850 0.95017 0.97801 1.70024 1.41274 1.00033 1.44142 0.85593 0.79689 0.78421 0.78438 1.18821 1.20785 1.21229 1.21539 0.81960 0.99619 0.95877 0.88434 0.88732 0.86434 0.75003 0.79580 0.89264 0.87776 0.89502 0.93867 0.94112 0.92099 0.93121 0.90345 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.68 10.54 127.77 1.35 3.02 16 2 N -0.32 -8.72 4.01 -366.70 -1.47 -10.19 16 3 N -0.28 -7.37 12.58 -57.02 -0.72 -8.08 16 4 C 0.03 0.68 12.03 85.23 1.02 1.70 16 5 C -0.16 -3.52 10.55 21.99 0.23 -3.29 16 6 C -0.50 -13.78 7.00 83.54 0.58 -13.19 16 7 S 2.72 85.80 5.68 -56.49 -0.32 85.48 16 8 O -0.96 -32.36 16.44 -128.00 -2.10 -34.47 16 9 O -0.97 -35.24 14.37 -128.00 -1.84 -37.07 16 10 N -0.99 -32.13 3.30 -513.84 -1.69 -33.83 16 11 C 0.12 3.39 6.48 86.36 0.56 3.95 16 12 C -0.13 -4.39 6.08 30.67 0.19 -4.21 16 13 C -0.11 -4.61 4.96 30.62 0.15 -4.46 16 14 C 0.04 1.69 2.24 -11.61 -0.03 1.66 16 15 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 16 C -0.53 -27.58 8.57 25.60 0.22 -27.36 16 17 H 0.06 3.06 7.75 -2.91 -0.02 3.03 16 18 C 0.02 0.82 5.30 84.65 0.45 1.27 16 19 N -0.92 -51.37 11.31 21.45 0.24 -51.13 16 20 Si 0.95 42.11 29.54 68.60 2.03 44.13 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.13 5.06 5.67 86.22 0.49 5.55 16 25 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.09 2.37 5.69 -2.39 -0.01 2.35 16 27 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.23 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.10 2.54 6.92 -2.39 -0.02 2.52 16 32 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.06 3.10 6.04 -2.39 -0.01 3.08 16 36 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 37 H 0.08 2.91 5.91 -2.39 -0.01 2.90 16 38 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -68.23 319.82 0.41 -67.82 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.07 Total: 12.68 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 5.22 Total: -35.35 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -3.64 Total: -103.23 kcal Atomic # 8 Polarization: -67.60 SS G_CDS: -3.94 Total: -71.54 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 85.80 SS G_CDS: -0.32 Total: 85.48 kcal Total: -68.23 0.41 -67.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397676544.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.020 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds