Wall clock time and date at job start Fri Apr 10 2020 17:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99791 * 2 1 4 4 C 1.52998 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47015 * 64.99706 * 4 3 2 6 6 C 1.46900 * 110.99574 * 190.00379 * 5 4 3 7 7 C 1.50694 * 109.47456 * 76.00668 * 6 5 4 8 8 O 1.21290 * 120.00186 * 5.36188 * 7 6 5 9 9 N 1.34779 * 120.00205 * 185.35344 * 7 6 5 10 10 C 1.37097 * 120.00164 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99954 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00170 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99544 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47090 * 60.00181 * 14 12 10 16 16 H 1.48502 * 109.46985 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47116 * 300.00141 * 14 12 10 18 18 C 1.46898 * 110.99682 * 66.05246 * 5 4 3 19 19 C 1.50710 * 109.46601 * 199.63513 * 18 5 4 20 20 C 1.33632 * 126.03796 * 84.52490 * 19 18 5 21 21 N 1.31781 * 114.50188 * 180.02562 * 20 19 18 22 22 C 1.29028 * 117.12343 * 359.97438 * 21 20 19 23 23 S 1.70986 * 110.16593 * 359.73660 * 22 21 20 24 24 H 1.09004 * 109.47254 * 299.99847 * 1 2 3 25 25 H 1.09000 * 109.47385 * 60.00407 * 1 2 3 26 26 H 1.09008 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46918 * 60.00198 * 3 2 1 28 28 H 1.09007 * 109.46887 * 300.00282 * 3 2 1 29 29 H 1.09005 * 109.46926 * 305.00268 * 4 3 2 30 30 H 1.08993 * 109.47034 * 185.00278 * 4 3 2 31 31 H 1.09003 * 109.47138 * 196.01016 * 6 5 4 32 32 H 1.09000 * 109.47308 * 316.00508 * 6 5 4 33 33 H 0.96994 * 120.00025 * 0.02562 * 9 7 6 34 34 H 0.97005 * 119.99544 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46926 * 319.62900 * 18 5 4 36 36 H 1.08993 * 109.47302 * 79.63611 * 18 5 4 37 37 H 1.08004 * 122.74893 * 359.97438 * 20 19 18 38 38 H 1.08000 * 124.91992 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9768 0.5628 -1.2561 6 6 5.4026 0.2138 -1.1978 7 6 5.5829 -1.0235 -0.3568 8 8 4.6128 -1.6175 0.0641 9 7 6.8223 -1.4702 -0.0723 10 6 6.9864 -2.5962 0.6924 11 1 6.1225 -3.1255 1.0665 12 6 8.2642 -3.0565 0.9861 13 7 9.3153 -2.4122 0.5313 14 14 8.4877 -4.5903 2.0287 15 1 7.8362 -5.7440 1.3580 16 1 9.9368 -4.8682 2.1960 17 1 7.8678 -4.3777 3.3612 18 6 3.6949 1.4357 -2.4035 19 6 3.6990 0.6180 -3.6696 20 6 2.6693 -0.0795 -4.1582 21 7 2.9246 -0.7144 -5.2845 22 6 4.1123 -0.5907 -5.7733 23 16 5.0601 0.4193 -4.7707 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1766 0.0890 31 1 5.7719 0.0250 -2.2059 32 1 5.9607 1.0387 -0.7550 33 1 7.5982 -0.9951 -0.4086 34 1 10.2073 -2.7333 0.7366 35 1 2.7177 1.9009 -2.2747 36 1 4.4600 2.2093 -2.4682 37 1 1.7069 -0.1204 -3.6697 38 1 4.4566 -1.0545 -6.6858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447852291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:13 Heat of formation + Delta-G solvation = -15.515516 kcal Electronic energy + Delta-G solvation = -22284.113496 eV Core-core repulsion = 18868.585156 eV Total energy + Delta-G solvation = -3415.528339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61256 -38.68131 -37.60561 -36.26471 -33.76121 -31.52165 -31.16124 -29.83813 -27.45028 -26.32551 -25.43854 -24.26123 -23.44382 -21.14311 -19.98699 -18.99845 -18.02891 -17.78399 -16.44141 -16.30398 -15.85036 -15.52189 -15.29592 -14.58504 -14.30931 -14.28416 -13.89066 -13.84756 -13.69621 -13.53273 -13.32247 -12.53618 -12.17703 -12.05336 -12.02974 -11.51792 -11.42701 -11.21336 -11.11720 -10.87167 -10.62581 -10.38666 -10.13682 -9.59631 -9.44316 -9.38701 -9.17828 -8.83024 -8.39173 -7.88104 -7.83753 -6.33787 -3.73773 0.78866 1.43788 1.81610 2.95664 3.25462 3.30049 3.35109 3.94556 4.01576 4.04908 4.28752 4.42584 4.83559 4.97616 5.11409 5.16428 5.24736 5.30389 5.33946 5.38567 5.46285 5.48433 5.59270 5.63477 5.76955 5.80531 5.86108 5.92533 6.20430 6.26523 6.36600 7.17880 7.21427 7.49713 7.62701 7.78928 8.14853 8.72034 9.27564 9.64155 10.17840 10.84305 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.004874 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.529988 B = 5743.590609 C = 7168.672941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.068 3.932 4 C 0.059 3.941 5 N -0.499 5.499 6 C 0.042 3.958 7 C 0.445 3.555 8 O -0.561 6.561 9 N -0.570 5.570 10 C -0.295 4.295 11 H 0.101 0.899 12 C 0.021 3.979 13 N -0.905 5.905 14 Si 0.929 3.071 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.126 3.874 19 C -0.198 4.198 20 C 0.051 3.949 21 N -0.472 5.472 22 C 0.014 3.986 23 S 0.112 5.888 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.390 0.610 34 H 0.270 0.730 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.174 0.826 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 12.133 -8.270 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.009 4.009 4 C -0.068 4.068 5 N -0.223 5.223 6 C -0.089 4.089 7 C 0.229 3.771 8 O -0.443 6.443 9 N -0.208 5.208 10 C -0.424 4.424 11 H 0.119 0.881 12 C -0.180 4.180 13 N -0.547 5.547 14 Si 0.756 3.244 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.004 4.004 19 C -0.320 4.320 20 C -0.100 4.100 21 N -0.185 5.185 22 C -0.284 4.284 23 S 0.364 5.636 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.223 0.777 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.191 0.809 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.990 11.085 -8.375 17.112 hybrid contribution 0.227 0.306 0.710 0.806 sum -9.763 11.390 -7.665 16.847 Atomic orbital electron populations 1.22710 0.82596 1.02507 0.98927 1.88245 1.17885 1.26212 1.94970 1.22554 0.93740 0.85599 0.99007 1.22170 0.93444 0.97541 0.93650 1.61425 1.17448 1.42133 1.01278 1.21973 0.88054 0.97717 1.01169 1.19704 0.84209 0.87464 0.85693 1.90581 1.38932 1.59189 1.55554 1.41856 1.05873 1.26006 1.47078 1.19633 0.93494 1.02751 1.26543 0.88070 1.25215 0.94936 0.99391 0.98449 1.69608 0.98393 1.40555 1.46151 0.85951 0.76884 0.81467 0.80106 1.19972 1.21058 1.19997 1.20508 1.02080 0.91681 0.86132 1.25840 0.95834 1.08096 1.02222 1.21647 1.00860 0.95464 0.92019 1.66316 1.18908 1.21281 1.11976 1.28297 0.92457 1.02860 1.04791 1.84027 1.17379 1.45204 1.16997 0.94849 0.94784 0.89870 0.93419 0.93898 0.88213 0.93825 0.89723 0.93241 0.77703 0.91989 0.88654 0.93579 0.80915 0.78743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.36 -5.83 10.65 -35.23 -0.38 -6.21 16 3 C 0.07 0.89 6.02 37.16 0.22 1.11 16 4 C 0.06 0.89 4.99 -3.82 -0.02 0.87 16 5 N -0.50 -8.20 3.90 -237.52 -0.93 -9.13 16 6 C 0.04 0.77 5.29 -4.98 -0.03 0.74 16 7 C 0.44 10.76 7.34 -10.99 -0.08 10.68 16 8 O -0.56 -15.68 15.10 5.55 0.08 -15.60 16 9 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 10 C -0.29 -8.38 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 13 N -0.91 -24.96 13.05 55.50 0.72 -24.24 16 14 Si 0.93 21.52 29.55 -169.99 -5.02 16.50 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 C 0.13 1.60 5.37 -4.97 -0.03 1.57 16 19 C -0.20 -2.72 5.54 -35.92 -0.20 -2.91 16 20 C 0.05 0.74 11.25 -19.19 -0.22 0.53 16 21 N -0.47 -7.01 10.54 -15.75 -0.17 -7.17 16 22 C 0.01 0.17 12.23 51.58 0.63 0.80 16 23 S 0.11 1.37 22.10 -107.50 -2.38 -1.00 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.46 6.08 -51.92 -0.32 0.15 16 29 H 0.10 1.87 6.90 -51.93 -0.36 1.51 16 30 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.08 1.47 6.26 -51.93 -0.33 1.14 16 32 H 0.05 0.80 8.00 -51.93 -0.42 0.38 16 33 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 34 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.10 1.02 5.82 -51.93 -0.30 0.72 16 36 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 37 H 0.17 2.32 8.06 -52.48 -0.42 1.90 16 38 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 336.94 15.07 5.08 5.08 Total: -1.00 -34.35 336.94 -6.80 -41.16 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.92 Total: 8.61 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 1.16 Total: 6.81 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.43 Total: -55.34 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.29 Total: -21.80 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.38 Total: -1.00 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.35 -6.80 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447852291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.641 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds