Wall clock time and date at job start Fri Apr 10 2020 17:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99791 * 2 1 4 4 C 1.52998 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47015 * 64.99706 * 4 3 2 6 6 C 1.46900 * 110.99574 * 190.00379 * 5 4 3 7 7 C 1.50694 * 109.47456 * 76.00668 * 6 5 4 8 8 O 1.21290 * 120.00186 * 5.36188 * 7 6 5 9 9 N 1.34779 * 120.00205 * 185.35344 * 7 6 5 10 10 C 1.37097 * 120.00164 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99954 * 0.02562 * 10 9 7 12 12 C 1.38953 * 120.00170 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99544 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47090 * 60.00181 * 14 12 10 16 16 H 1.48502 * 109.46985 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47116 * 300.00141 * 14 12 10 18 18 C 1.46898 * 110.99682 * 66.05246 * 5 4 3 19 19 C 1.50710 * 109.46601 * 199.63513 * 18 5 4 20 20 C 1.33632 * 126.03796 * 84.52490 * 19 18 5 21 21 N 1.31781 * 114.50188 * 180.02562 * 20 19 18 22 22 C 1.29028 * 117.12343 * 359.97438 * 21 20 19 23 23 S 1.70986 * 110.16593 * 359.73660 * 22 21 20 24 24 H 1.09004 * 109.47254 * 299.99847 * 1 2 3 25 25 H 1.09000 * 109.47385 * 60.00407 * 1 2 3 26 26 H 1.09008 * 109.47130 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46918 * 60.00198 * 3 2 1 28 28 H 1.09007 * 109.46887 * 300.00282 * 3 2 1 29 29 H 1.09005 * 109.46926 * 305.00268 * 4 3 2 30 30 H 1.08993 * 109.47034 * 185.00278 * 4 3 2 31 31 H 1.09003 * 109.47138 * 196.01016 * 6 5 4 32 32 H 1.09000 * 109.47308 * 316.00508 * 6 5 4 33 33 H 0.96994 * 120.00025 * 0.02562 * 9 7 6 34 34 H 0.97005 * 119.99544 * 179.97438 * 13 12 10 35 35 H 1.08998 * 109.46926 * 319.62900 * 18 5 4 36 36 H 1.08993 * 109.47302 * 79.63611 * 18 5 4 37 37 H 1.08004 * 122.74893 * 359.97438 * 20 19 18 38 38 H 1.08000 * 124.91992 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9768 0.5628 -1.2561 6 6 5.4026 0.2138 -1.1978 7 6 5.5829 -1.0235 -0.3568 8 8 4.6128 -1.6175 0.0641 9 7 6.8223 -1.4702 -0.0723 10 6 6.9864 -2.5962 0.6924 11 1 6.1225 -3.1255 1.0665 12 6 8.2642 -3.0565 0.9861 13 7 9.3153 -2.4122 0.5313 14 14 8.4877 -4.5903 2.0287 15 1 7.8362 -5.7440 1.3580 16 1 9.9368 -4.8682 2.1960 17 1 7.8678 -4.3777 3.3612 18 6 3.6949 1.4357 -2.4035 19 6 3.6990 0.6180 -3.6696 20 6 2.6693 -0.0795 -4.1582 21 7 2.9246 -0.7144 -5.2845 22 6 4.1123 -0.5907 -5.7733 23 16 5.0601 0.4193 -4.7707 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8514 0.5683 0.8409 30 1 3.9784 2.1766 0.0890 31 1 5.7719 0.0250 -2.2059 32 1 5.9607 1.0387 -0.7550 33 1 7.5982 -0.9951 -0.4086 34 1 10.2073 -2.7333 0.7366 35 1 2.7177 1.9009 -2.2747 36 1 4.4600 2.2093 -2.4682 37 1 1.7069 -0.1204 -3.6697 38 1 4.4566 -1.0545 -6.6858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447852291.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:13 Heat of formation + Delta-G solvation = -42.431708 kcal Electronic energy + Delta-G solvation = -22285.280669 eV Core-core repulsion = 18868.585156 eV Total energy + Delta-G solvation = -3416.695513 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73033 -40.17901 -38.96627 -37.55213 -35.82479 -33.22691 -32.56322 -31.10329 -28.72299 -27.38866 -26.85111 -25.76307 -24.59891 -22.31068 -21.28593 -20.58748 -19.81197 -19.04755 -17.84020 -17.42756 -17.24712 -16.77130 -16.47377 -16.30786 -15.80733 -15.41795 -15.36066 -15.12998 -14.99328 -14.78701 -14.59669 -13.85825 -13.56174 -13.48052 -13.29641 -13.12075 -12.90590 -12.51103 -12.40374 -12.32922 -12.12367 -12.10467 -11.67786 -11.43905 -10.61328 -10.45423 -10.25697 -10.19034 -9.95247 -9.81057 -9.15175 -8.43002 -5.90827 -0.20538 0.47779 0.82390 1.40246 1.41180 1.52080 1.91005 2.12515 2.30564 2.79111 3.06111 3.23401 3.39129 3.51906 3.87773 4.08677 4.15717 4.22366 4.25582 4.37736 4.42969 4.48938 4.53765 4.58228 4.60311 4.65989 4.71285 4.86378 4.90839 5.02565 5.24260 5.43403 5.86612 6.08180 6.14032 6.52800 6.66266 6.78832 7.18335 7.62242 8.20532 8.74430 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.012248 B = 0.004874 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.529988 B = 5743.590609 C = 7168.672941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.068 3.932 4 C 0.059 3.941 5 N -0.523 5.523 6 C 0.057 3.943 7 C 0.442 3.558 8 O -0.604 6.604 9 N -0.579 5.579 10 C -0.330 4.330 11 H 0.074 0.926 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.989 3.011 15 H -0.275 1.275 16 H -0.269 1.269 17 H -0.273 1.273 18 C 0.130 3.870 19 C -0.213 4.213 20 C 0.036 3.964 21 N -0.504 5.504 22 C 0.013 3.987 23 S 0.135 5.865 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.394 0.606 34 H 0.277 0.723 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.174 0.826 38 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.745 13.514 -8.942 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.008 4.008 4 C -0.068 4.068 5 N -0.248 5.248 6 C -0.074 4.074 7 C 0.228 3.772 8 O -0.488 6.488 9 N -0.218 5.218 10 C -0.459 4.459 11 H 0.092 0.908 12 C -0.211 4.211 13 N -0.562 5.562 14 Si 0.813 3.187 15 H -0.201 1.201 16 H -0.193 1.193 17 H -0.198 1.198 18 C 0.001 3.999 19 C -0.335 4.335 20 C -0.115 4.115 21 N -0.217 5.217 22 C -0.284 4.284 23 S 0.387 5.613 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.191 0.809 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -9.722 12.501 -9.063 18.246 hybrid contribution 0.119 -0.109 0.872 0.886 sum -9.603 12.392 -8.191 17.689 Atomic orbital electron populations 1.22835 0.80681 1.02771 1.00676 1.88177 1.20268 1.28510 1.95379 1.22684 0.92139 0.84788 1.01218 1.22181 0.95213 0.97990 0.91457 1.61288 1.15951 1.44514 1.03042 1.21764 0.90219 0.95254 1.00209 1.20801 0.82916 0.88544 0.84903 1.90550 1.40152 1.60987 1.57132 1.41925 1.06753 1.25761 1.47328 1.19562 0.93324 1.04401 1.28630 0.90767 1.25957 0.94203 1.01936 0.99051 1.69665 0.98743 1.41494 1.46346 0.85051 0.77520 0.77753 0.78373 1.20052 1.19299 1.19781 1.20612 1.04031 0.91271 0.84018 1.26044 0.96208 1.08315 1.02914 1.21789 1.01442 0.95950 0.92339 1.66335 1.20255 1.22453 1.12704 1.28871 0.91844 1.02195 1.05497 1.83905 1.16457 1.44615 1.16282 0.93189 0.92790 0.90512 0.91410 0.91172 0.92904 0.90401 0.88732 0.90711 0.77211 0.91398 0.86490 0.91197 0.80881 0.75788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.85 16 2 O -0.40 -13.18 10.65 -148.98 -1.59 -14.77 16 3 C 0.07 1.65 6.02 71.98 0.43 2.09 16 4 C 0.06 1.70 4.99 86.30 0.43 2.13 16 5 N -0.52 -16.54 3.90 -905.38 -3.53 -20.07 16 6 C 0.06 2.02 5.29 85.56 0.45 2.47 16 7 C 0.44 21.81 7.34 87.65 0.64 22.46 16 8 O -0.60 -35.12 15.10 -3.06 -0.05 -35.17 16 9 N -0.58 -30.60 5.29 -306.99 -1.62 -32.22 16 10 C -0.33 -19.27 9.68 84.04 0.81 -18.45 16 11 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -50.46 13.05 21.66 0.28 -50.18 16 14 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 C 0.13 2.94 5.37 85.56 0.46 3.40 16 19 C -0.21 -5.46 5.54 24.64 0.14 -5.33 16 20 C 0.04 1.01 11.25 83.65 0.94 1.95 16 21 N -0.50 -14.53 10.54 -203.74 -2.15 -16.68 16 22 C 0.01 0.30 12.23 130.65 1.60 1.90 16 23 S 0.14 3.04 22.10 -56.49 -1.25 1.79 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.29 6.08 -2.38 -0.01 1.28 16 29 H 0.05 2.02 6.90 -2.38 -0.02 2.01 16 30 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 31 H 0.09 3.14 6.26 -2.39 -0.01 3.13 16 32 H 0.08 2.26 8.00 -2.39 -0.02 2.24 16 33 H 0.39 19.72 7.90 -92.71 -0.73 18.99 16 34 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 35 H 0.12 2.12 5.82 -2.39 -0.01 2.10 16 36 H 0.07 1.28 8.00 -2.39 -0.02 1.26 16 37 H 0.17 4.62 8.06 -2.91 -0.02 4.59 16 38 H 0.23 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -76.59 336.94 0.11 -76.48 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.36 Total: 30.40 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 7.62 Total: 14.28 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -7.02 Total: -119.15 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -1.63 Total: -49.94 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.25 Total: 1.79 kcal Total: -76.59 0.11 -76.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447852291.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.048 kcal (2) G-P(sol) polarization free energy of solvation -76.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds