Wall clock time and date at job start Fri Apr 10 2020 17:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47062 * 290.89889 * 3 2 1 5 5 C 1.36970 * 120.00068 * 274.54160 * 4 3 2 6 6 H 1.07999 * 119.99940 * 125.16242 * 5 4 3 7 7 C 1.38972 * 120.00165 * 305.15917 * 5 4 3 8 8 N 1.31419 * 120.00139 * 4.14371 * 7 5 4 9 9 Si 1.86806 * 120.00101 * 184.13769 * 7 5 4 10 10 H 1.48501 * 109.47067 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46918 * 120.00497 * 9 7 5 12 12 H 1.48497 * 109.47260 * 240.00281 * 9 7 5 13 13 C 1.34787 * 119.99980 * 94.54812 * 4 3 2 14 14 O 1.21647 * 119.99528 * 3.28551 * 13 4 3 15 15 C 1.47164 * 119.99812 * 183.29180 * 13 4 3 16 16 C 1.38103 * 126.82391 * 353.10079 * 15 13 4 17 17 N 1.34112 * 107.86208 * 180.23860 * 16 15 13 18 18 H 0.97001 * 125.15287 * 179.74348 * 17 16 15 19 19 N 1.39762 * 109.69541 * 359.74412 * 17 16 15 20 20 C 1.31340 * 109.10579 * 0.02562 * 19 17 16 21 21 C 1.48371 * 126.50665 * 179.97438 * 20 19 17 22 22 C 1.40888 * 126.22735 * 144.99748 * 21 20 19 23 23 N 1.30658 * 108.09292 * 180.02562 * 22 21 20 24 24 N 1.40007 * 108.54373 * 0.02562 * 23 22 21 25 25 C 1.46497 * 125.89031 * 179.73218 * 24 23 22 26 26 C 1.34820 * 108.22271 * 359.97438 * 24 23 22 27 27 H 4.40632 * 5.51460 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.47195 * 170.89694 * 3 2 1 29 29 H 1.09004 * 109.47109 * 50.90104 * 3 2 1 30 30 H 0.97003 * 120.00041 * 179.97438 * 8 7 5 31 31 H 1.08003 * 126.06540 * 359.94981 * 16 15 13 32 32 H 1.07998 * 125.95507 * 0.02562 * 22 21 20 33 33 H 1.09005 * 109.47220 * 90.02017 * 25 24 23 34 34 H 1.08997 * 109.47595 * 210.02291 * 25 24 23 35 35 H 1.08996 * 109.47277 * 330.02581 * 25 24 23 36 36 H 1.08000 * 126.19857 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4918 1.2904 5 6 3.2738 0.3714 2.3446 6 1 2.7860 0.1591 3.2845 7 6 4.0430 1.5204 2.2050 8 7 4.5697 1.8209 1.0391 9 14 4.3282 2.6378 3.6746 10 1 3.6329 2.0805 4.8625 11 1 5.7843 2.7294 3.9515 12 1 3.7947 3.9915 3.3780 13 6 3.4470 -1.7944 1.4400 14 8 3.3805 -2.5490 0.4882 15 6 3.8684 -2.3036 2.7549 16 6 4.1196 -1.5576 3.8897 17 7 4.4824 -2.4029 4.8656 18 1 4.7193 -2.1434 5.7698 19 7 4.4674 -3.7143 4.3827 20 6 4.1020 -3.7037 3.1211 21 6 3.9583 -4.8841 2.2338 22 6 2.9985 -5.0485 1.2156 23 7 3.1925 -6.2148 0.6596 24 7 4.2740 -6.8367 1.2951 25 6 4.8123 -8.1611 0.9751 26 6 4.7313 -6.0089 2.2559 27 1 -1.0499 0.0001 0.0002 28 1 3.0089 1.0156 -0.1626 29 1 3.0096 -0.6473 -0.7976 30 1 5.1063 2.6231 0.9415 31 1 4.0426 -0.4837 3.9746 32 1 2.2354 -4.3349 0.9424 33 1 5.5897 -8.0640 0.2172 34 1 5.2356 -8.6084 1.8744 35 1 4.0122 -8.7965 0.5954 36 1 5.5588 -6.2011 2.9227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490973576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:17 Heat of formation + Delta-G solvation = 192.785526 kcal Electronic energy + Delta-G solvation = -23638.423515 eV Core-core repulsion = 20128.776586 eV Total energy + Delta-G solvation = -3509.646929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83755 -40.06387 -38.07965 -34.98259 -33.17900 -32.54305 -31.57415 -31.32154 -29.53921 -29.01909 -26.59570 -26.24302 -24.91586 -22.03338 -21.65750 -20.56918 -19.35637 -18.91279 -18.45886 -17.17863 -16.38256 -15.82266 -15.55950 -15.17686 -14.78271 -14.41024 -14.24434 -13.99727 -13.71604 -13.62797 -12.79089 -12.66149 -12.57415 -12.43050 -12.15257 -11.92908 -11.77398 -11.52713 -11.32747 -10.82939 -10.53097 -10.41316 -10.30595 -9.66032 -9.42062 -9.29203 -9.05923 -8.93067 -8.49723 -8.03632 -7.61669 -7.40334 -6.47490 -4.40417 2.01516 2.47070 2.69230 2.79530 2.99778 3.05867 3.10406 3.35039 3.59618 3.67853 3.79009 3.96260 4.57543 4.69606 4.86463 4.97082 5.12411 5.18212 5.30111 5.39691 5.44505 5.47708 5.82082 6.02329 6.15224 6.37110 6.43603 6.60529 6.79010 6.84806 7.06620 7.09610 7.19639 7.27944 7.31712 7.81321 8.00463 8.08942 8.19919 8.26114 8.52966 8.92138 9.48528 9.92604 10.53180 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.005288 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.216410 B = 5293.272628 C = 6431.801914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.147 4.147 3 C 0.206 3.794 4 N -0.442 5.442 5 C -0.346 4.346 6 H 0.090 0.910 7 C 0.053 3.947 8 N -0.857 5.857 9 Si 0.906 3.094 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.276 1.276 13 C 0.567 3.433 14 O -0.590 6.590 15 C -0.251 4.251 16 C 0.106 3.894 17 N -0.487 5.487 18 H 0.433 0.567 19 N -0.318 5.318 20 C 0.197 3.803 21 C -0.154 4.154 22 C 0.122 3.878 23 N -0.313 5.313 24 N -0.385 5.385 25 C 0.107 3.893 26 C 0.076 3.924 27 H 0.205 0.795 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.273 0.727 31 H 0.216 0.784 32 H 0.193 0.807 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 -8.384 5.178 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.148 4.148 3 C 0.084 3.916 4 N -0.160 5.160 5 C -0.474 4.474 6 H 0.107 0.893 7 C -0.155 4.155 8 N -0.492 5.492 9 Si 0.731 3.269 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.201 1.201 13 C 0.358 3.642 14 O -0.475 6.475 15 C -0.266 4.266 16 C -0.041 4.041 17 N -0.193 5.193 18 H 0.276 0.724 19 N -0.140 5.140 20 C 0.027 3.973 21 C -0.168 4.168 22 C -0.066 4.066 23 N -0.133 5.133 24 N -0.167 5.167 25 C -0.035 4.035 26 C -0.073 4.073 27 H 0.222 0.778 28 H 0.143 0.857 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.232 0.768 32 H 0.210 0.790 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.395 -10.265 4.616 11.341 hybrid contribution 0.246 2.187 1.209 2.511 sum 1.641 -8.078 5.826 10.094 Atomic orbital electron populations 1.24567 0.95623 1.05159 1.02949 1.24463 0.95538 0.96903 0.97937 1.18597 0.81384 1.03469 0.88154 1.42935 1.57058 1.05929 1.10106 1.19390 1.30488 1.04314 0.93188 0.89326 1.25680 0.94536 0.98026 0.97246 1.69684 1.31180 1.25611 1.22740 0.86219 0.78618 0.80639 0.81419 1.18890 1.20115 1.20123 1.17469 0.77844 0.82658 0.86223 1.90606 1.58520 1.57338 1.41069 1.21221 1.18631 0.90810 0.95916 1.24932 0.93258 0.98540 0.87403 1.46036 1.56024 1.04408 1.12846 0.72423 1.77032 1.27061 0.98578 1.11330 1.20859 0.95549 0.91166 0.89704 1.17654 1.02791 0.93707 1.02640 1.24137 0.98253 0.92689 0.91521 1.77284 1.04878 1.10026 1.21135 1.48269 1.25899 1.15165 1.27338 1.21744 0.99549 0.80157 1.02031 1.22398 0.99926 0.90923 0.94016 0.77780 0.85673 0.89793 0.91605 0.76798 0.79037 0.91104 0.89896 0.89555 0.80974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.20 19.25 29.55 0.57 -4.63 16 2 C -0.15 -3.30 13.64 -37.12 -0.51 -3.80 16 3 C 0.21 4.91 5.60 -6.83 -0.04 4.87 16 4 N -0.44 -10.79 2.41 -119.24 -0.29 -11.08 16 5 C -0.35 -8.07 6.31 -14.98 -0.09 -8.16 16 6 H 0.09 1.96 5.89 -52.49 -0.31 1.65 16 7 C 0.05 1.22 5.39 -17.46 -0.09 1.13 16 8 N -0.86 -21.15 11.34 55.50 0.63 -20.52 16 9 Si 0.91 17.33 29.11 -169.99 -4.95 12.38 16 10 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 11 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 12 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 13 C 0.57 13.93 7.62 -12.63 -0.10 13.84 16 14 O -0.59 -15.25 12.72 5.24 0.07 -15.18 16 15 C -0.25 -5.53 6.21 -102.95 -0.64 -6.17 16 16 C 0.11 2.00 10.28 -16.61 -0.17 1.83 16 17 N -0.49 -7.91 7.20 30.83 0.22 -7.69 16 18 H 0.43 5.14 8.96 -182.85 -1.64 3.51 16 19 N -0.32 -5.89 12.65 34.59 0.44 -5.45 16 20 C 0.20 4.02 7.27 -80.54 -0.59 3.44 16 21 C -0.15 -2.99 5.78 -105.35 -0.61 -3.60 16 22 C 0.12 2.45 10.13 -17.05 -0.17 2.28 16 23 N -0.31 -5.88 12.54 30.81 0.39 -5.49 16 24 N -0.39 -5.91 4.00 -67.88 -0.27 -6.18 16 25 C 0.11 1.02 11.46 59.85 0.69 1.70 16 26 C 0.08 1.21 11.45 -16.87 -0.19 1.02 16 27 H 0.21 3.09 7.80 -54.10 -0.42 2.67 16 28 H 0.13 3.09 5.87 -51.93 -0.31 2.79 16 29 H 0.08 2.02 7.25 -51.93 -0.38 1.65 16 30 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 31 H 0.22 3.95 4.28 -52.48 -0.22 3.73 16 32 H 0.19 4.06 6.66 -52.49 -0.35 3.71 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 321.20 15.07 4.84 4.84 Total: -1.00 -31.48 321.20 -5.32 -36.80 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -4.45 Total: 13.85 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.95 Total: 3.73 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 1.12 Total: -56.42 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.07 Total: -15.18 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -4.95 Total: 12.38 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.48 -5.32 -36.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.585 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds