Wall clock time and date at job start Fri Apr 10 2020 17:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47062 * 290.89889 * 3 2 1 5 5 C 1.36970 * 120.00068 * 274.54160 * 4 3 2 6 6 H 1.07999 * 119.99940 * 125.16242 * 5 4 3 7 7 C 1.38972 * 120.00165 * 305.15917 * 5 4 3 8 8 N 1.31419 * 120.00139 * 4.14371 * 7 5 4 9 9 Si 1.86806 * 120.00101 * 184.13769 * 7 5 4 10 10 H 1.48501 * 109.47067 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46918 * 120.00497 * 9 7 5 12 12 H 1.48497 * 109.47260 * 240.00281 * 9 7 5 13 13 C 1.34787 * 119.99980 * 94.54812 * 4 3 2 14 14 O 1.21647 * 119.99528 * 3.28551 * 13 4 3 15 15 C 1.47164 * 119.99812 * 183.29180 * 13 4 3 16 16 C 1.38103 * 126.82391 * 353.10079 * 15 13 4 17 17 N 1.34112 * 107.86208 * 180.23860 * 16 15 13 18 18 H 0.97001 * 125.15287 * 179.74348 * 17 16 15 19 19 N 1.39762 * 109.69541 * 359.74412 * 17 16 15 20 20 C 1.31340 * 109.10579 * 0.02562 * 19 17 16 21 21 C 1.48371 * 126.50665 * 179.97438 * 20 19 17 22 22 C 1.40888 * 126.22735 * 144.99748 * 21 20 19 23 23 N 1.30658 * 108.09292 * 180.02562 * 22 21 20 24 24 N 1.40007 * 108.54373 * 0.02562 * 23 22 21 25 25 C 1.46497 * 125.89031 * 179.73218 * 24 23 22 26 26 C 1.34820 * 108.22271 * 359.97438 * 24 23 22 27 27 H 4.40632 * 5.51460 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.47195 * 170.89694 * 3 2 1 29 29 H 1.09004 * 109.47109 * 50.90104 * 3 2 1 30 30 H 0.97003 * 120.00041 * 179.97438 * 8 7 5 31 31 H 1.08003 * 126.06540 * 359.94981 * 16 15 13 32 32 H 1.07998 * 125.95507 * 0.02562 * 22 21 20 33 33 H 1.09005 * 109.47220 * 90.02017 * 25 24 23 34 34 H 1.08997 * 109.47595 * 210.02291 * 25 24 23 35 35 H 1.08996 * 109.47277 * 330.02581 * 25 24 23 36 36 H 1.08000 * 126.19857 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4918 1.2904 5 6 3.2738 0.3714 2.3446 6 1 2.7860 0.1591 3.2845 7 6 4.0430 1.5204 2.2050 8 7 4.5697 1.8209 1.0391 9 14 4.3282 2.6378 3.6746 10 1 3.6329 2.0805 4.8625 11 1 5.7843 2.7294 3.9515 12 1 3.7947 3.9915 3.3780 13 6 3.4470 -1.7944 1.4400 14 8 3.3805 -2.5490 0.4882 15 6 3.8684 -2.3036 2.7549 16 6 4.1196 -1.5576 3.8897 17 7 4.4824 -2.4029 4.8656 18 1 4.7193 -2.1434 5.7698 19 7 4.4674 -3.7143 4.3827 20 6 4.1020 -3.7037 3.1211 21 6 3.9583 -4.8841 2.2338 22 6 2.9985 -5.0485 1.2156 23 7 3.1925 -6.2148 0.6596 24 7 4.2740 -6.8367 1.2951 25 6 4.8123 -8.1611 0.9751 26 6 4.7313 -6.0089 2.2559 27 1 -1.0499 0.0001 0.0002 28 1 3.0089 1.0156 -0.1626 29 1 3.0096 -0.6473 -0.7976 30 1 5.1063 2.6231 0.9415 31 1 4.0426 -0.4837 3.9746 32 1 2.2354 -4.3349 0.9424 33 1 5.5897 -8.0640 0.2172 34 1 5.2356 -8.6084 1.8744 35 1 4.0122 -8.7965 0.5954 36 1 5.5588 -6.2011 2.9227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490973576.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:17 Heat of formation + Delta-G solvation = 171.640295 kcal Electronic energy + Delta-G solvation = -23639.340441 eV Core-core repulsion = 20128.776586 eV Total energy + Delta-G solvation = -3510.563855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.21457 -41.51597 -39.85975 -36.80193 -34.38119 -34.26508 -33.12727 -32.94249 -31.12660 -30.35295 -28.13825 -27.55801 -26.69483 -23.39679 -23.27162 -21.96762 -20.89599 -20.45591 -20.05603 -18.77989 -17.64548 -17.42053 -17.29553 -16.56607 -16.32155 -16.03417 -15.80627 -15.34867 -15.20187 -15.05220 -14.45420 -14.09355 -13.92828 -13.69422 -13.63286 -13.40883 -13.20359 -13.13014 -12.98853 -12.48178 -11.98836 -11.85823 -11.74679 -11.36151 -11.02849 -10.84809 -10.70786 -10.42767 -10.20363 -9.58217 -9.29999 -8.95718 -8.23343 -6.23540 0.69072 0.92100 1.18185 1.49633 1.52017 1.63250 1.68779 1.84619 2.07497 2.09361 2.19530 2.35341 2.83778 3.10652 3.26456 3.61958 3.83957 3.86289 4.02402 4.17939 4.44417 4.49913 4.62685 4.68477 4.73755 4.80345 4.94369 5.00383 5.13315 5.20234 5.25864 5.46701 5.54822 5.71138 6.14565 6.20683 6.41481 6.51002 6.71376 6.79145 6.85724 7.12699 7.67290 8.11866 8.78879 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.005288 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.216410 B = 5293.272628 C = 6431.801914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.213 4.213 3 C 0.212 3.788 4 N -0.451 5.451 5 C -0.356 4.356 6 H 0.102 0.898 7 C 0.012 3.988 8 N -0.895 5.895 9 Si 0.973 3.027 10 H -0.237 1.237 11 H -0.275 1.275 12 H -0.284 1.284 13 C 0.553 3.447 14 O -0.618 6.618 15 C -0.294 4.294 16 C 0.124 3.876 17 N -0.463 5.463 18 H 0.455 0.545 19 N -0.312 5.312 20 C 0.191 3.809 21 C -0.193 4.193 22 C 0.102 3.898 23 N -0.335 5.335 24 N -0.374 5.374 25 C 0.093 3.907 26 C 0.097 3.903 27 H 0.253 0.747 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.274 0.726 31 H 0.223 0.777 32 H 0.166 0.834 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.594 -9.288 7.845 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.214 4.214 3 C 0.089 3.911 4 N -0.169 5.169 5 C -0.483 4.483 6 H 0.119 0.881 7 C -0.192 4.192 8 N -0.531 5.531 9 Si 0.795 3.205 10 H -0.160 1.160 11 H -0.200 1.200 12 H -0.210 1.210 13 C 0.345 3.655 14 O -0.506 6.506 15 C -0.308 4.308 16 C -0.025 4.025 17 N -0.171 5.171 18 H 0.303 0.697 19 N -0.134 5.134 20 C 0.022 3.978 21 C -0.207 4.207 22 C -0.085 4.085 23 N -0.157 5.157 24 N -0.155 5.155 25 C -0.046 4.046 26 C -0.053 4.053 27 H 0.269 0.731 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.239 0.761 32 H 0.183 0.817 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.723 -11.200 7.315 13.488 hybrid contribution 0.116 2.362 0.328 2.388 sum 1.839 -8.838 7.643 11.828 Atomic orbital electron populations 1.25569 0.96428 1.01760 0.99724 1.24476 0.95994 0.99988 1.00969 1.18281 0.82957 1.01914 0.87900 1.43160 1.57114 1.06282 1.10377 1.19747 1.30883 1.04364 0.93335 0.88093 1.26524 0.93793 0.99155 0.99753 1.69832 1.32006 1.26247 1.25022 0.85184 0.78513 0.77918 0.78851 1.15957 1.20020 1.20986 1.17966 0.77706 0.82573 0.87256 1.90568 1.59781 1.57917 1.42285 1.21229 1.21408 0.92420 0.95772 1.24782 0.92010 0.98716 0.86997 1.46006 1.54257 1.03397 1.13412 0.69736 1.76988 1.26846 0.99260 1.10285 1.20996 0.95640 0.90922 0.90285 1.17853 1.04218 0.95114 1.03474 1.23804 0.98793 0.93107 0.92768 1.77178 1.06746 1.09887 1.21878 1.48741 1.24321 1.16416 1.26055 1.22275 1.00190 0.77560 1.04571 1.22880 0.99404 0.89458 0.93576 0.73111 0.87250 0.91937 0.91631 0.76112 0.81684 0.89660 0.86000 0.88725 0.77130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -8.30 19.25 74.32 1.43 -6.87 16 2 C -0.21 -9.86 13.64 31.12 0.42 -9.44 16 3 C 0.21 10.78 5.60 84.57 0.47 11.26 16 4 N -0.45 -23.05 2.41 -649.40 -1.56 -24.62 16 5 C -0.36 -16.82 6.31 84.07 0.53 -16.29 16 6 H 0.10 4.40 5.89 -2.91 -0.02 4.39 16 7 C 0.01 0.55 5.39 84.93 0.46 1.01 16 8 N -0.90 -45.59 11.34 21.67 0.25 -45.35 16 9 Si 0.97 34.71 29.11 68.60 2.00 36.71 16 10 H -0.24 -7.33 7.11 99.48 0.71 -6.62 16 11 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 12 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 13 C 0.55 28.56 7.62 86.59 0.66 29.22 16 14 O -0.62 -34.24 12.72 -4.18 -0.05 -34.29 16 15 C -0.29 -13.14 6.21 -18.78 -0.12 -13.26 16 16 C 0.12 4.57 10.28 84.31 0.87 5.43 16 17 N -0.46 -13.94 7.20 -56.36 -0.41 -14.34 16 18 H 0.46 9.26 8.96 -213.54 -1.91 7.35 16 19 N -0.31 -10.97 12.65 -44.48 -0.56 -11.53 16 20 C 0.19 7.79 7.27 44.10 0.32 8.11 16 21 C -0.19 -7.53 5.78 -20.34 -0.12 -7.65 16 22 C 0.10 4.31 10.13 85.52 0.87 5.18 16 23 N -0.34 -12.79 12.54 -56.44 -0.71 -13.50 16 24 N -0.37 -10.87 4.00 -368.69 -1.48 -12.34 16 25 C 0.09 1.48 11.46 127.77 1.46 2.94 16 26 C 0.10 2.92 11.45 83.83 0.96 3.88 16 27 H 0.25 6.71 7.80 -4.42 -0.03 6.68 16 28 H 0.11 5.80 5.87 -2.39 -0.01 5.79 16 29 H 0.06 3.31 7.25 -2.38 -0.02 3.30 16 30 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 31 H 0.22 7.80 4.28 -2.91 -0.01 7.79 16 32 H 0.17 7.68 6.66 -2.91 -0.02 7.67 16 33 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.21 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -72.76 321.20 4.93 -67.82 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.76 Total: 37.91 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 8.22 Total: 13.52 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.47 Total: -121.68 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.05 Total: -34.29 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.00 Total: 36.71 kcal Total: -72.76 4.93 -67.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490973576.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.465 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds