Wall clock time and date at job start Fri Apr 10 2020 17:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46823 * 216.94464 * 3 2 1 5 5 C 1.37097 * 120.00023 * 263.80634 * 4 3 2 6 6 H 1.08002 * 119.99771 * 142.48060 * 5 4 3 7 7 C 1.38949 * 120.00069 * 322.48541 * 5 4 3 8 8 N 1.31419 * 119.99929 * 157.61420 * 7 5 4 9 9 Si 1.86801 * 120.00130 * 337.61817 * 7 5 4 10 10 H 1.48501 * 109.46938 * 95.70483 * 9 7 5 11 11 H 1.48496 * 109.47246 * 215.70238 * 9 7 5 12 12 H 1.48497 * 109.46770 * 335.70689 * 9 7 5 13 13 C 1.34778 * 120.00133 * 83.81538 * 4 3 2 14 14 O 1.21291 * 119.99924 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00012 * 0.27005 * 13 4 3 16 16 N 1.46498 * 109.47523 * 179.72720 * 15 13 4 17 17 C 1.36387 * 126.36258 * 90.02223 * 16 15 13 18 18 O 1.35274 * 125.03546 * 359.97438 * 17 16 15 19 19 N 1.30757 * 109.93388 * 179.97438 * 17 16 15 20 20 C 1.35912 * 109.62286 * 359.97438 * 19 17 16 21 21 C 1.39705 * 133.43883 * 180.02562 * 20 19 17 22 22 C 1.37671 * 119.77018 * 179.97438 * 21 20 19 23 23 C 1.38725 * 120.50396 * 359.97438 * 22 21 20 24 24 C 1.37936 * 120.43561 * 0.02562 * 23 22 21 25 25 C 1.38448 * 126.36589 * 269.71552 * 16 15 13 26 26 H 4.40638 * 5.51422 * 179.97438 * 4 1 2 27 27 H 1.08998 * 109.47252 * 96.94683 * 3 2 1 28 28 H 1.09001 * 109.47125 * 336.94560 * 3 2 1 29 29 H 0.96997 * 119.99570 * 179.97438 * 8 7 5 30 30 H 1.09009 * 109.47073 * 299.73182 * 15 13 4 31 31 H 1.09000 * 109.46979 * 59.72491 * 15 13 4 32 32 H 0.96701 * 114.00159 * 90.00050 * 18 17 16 33 33 H 1.07994 * 120.11406 * 359.95383 * 21 20 19 34 34 H 1.08004 * 119.74828 * 180.02562 * 22 21 20 35 35 H 1.07998 * 119.78215 * 179.97438 * 23 22 21 36 36 H 1.07992 * 120.07520 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.1048 0.8302 5 6 3.4825 2.2968 0.2496 6 1 3.2621 3.2271 0.7521 7 6 4.1194 2.3081 -0.9853 8 7 4.0661 3.3811 -1.7423 9 14 5.0512 0.7982 -1.5695 10 1 4.1720 -0.0182 -2.4445 11 1 6.2526 1.2224 -2.3324 12 1 5.4697 -0.0098 -0.3960 13 6 3.2399 0.9487 2.1647 14 8 3.6433 1.8630 2.8520 15 6 2.8626 -0.3636 2.8022 16 7 3.0717 -0.2814 4.2498 17 6 2.1569 0.1222 5.1774 18 8 0.8928 0.5165 4.9009 19 7 2.6826 0.0714 6.3735 20 6 3.9661 -0.3677 6.2897 21 6 4.9646 -0.6035 7.2380 22 6 6.1984 -1.0602 6.8324 23 6 6.4579 -1.2888 5.4890 24 6 5.4828 -1.0610 4.5403 25 6 4.2328 -0.6045 4.9312 26 1 -1.0501 -0.0001 -0.0003 27 1 3.0094 0.1251 -1.0201 28 1 3.0098 -0.9448 0.4024 29 1 4.5111 3.3890 -2.6041 30 1 1.8135 -0.5783 2.5981 31 1 3.4831 -1.1594 2.3900 32 1 0.2461 -0.2024 4.9078 33 1 4.7693 -0.4277 8.2855 34 1 6.9699 -1.2427 7.5659 35 1 7.4300 -1.6467 5.1837 36 1 5.6910 -1.2412 3.4961 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490997300.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:19 Heat of formation + Delta-G solvation = 90.035759 kcal Electronic energy + Delta-G solvation = -23807.485433 eV Core-core repulsion = 20261.090189 eV Total energy + Delta-G solvation = -3546.395244 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.106 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03898 -39.08114 -38.05662 -36.33085 -35.58887 -33.97826 -32.81809 -31.79852 -30.40862 -28.75452 -27.96303 -26.93491 -24.66139 -22.92611 -22.12527 -20.97107 -19.44322 -18.72954 -18.43124 -17.37994 -17.03359 -16.73874 -16.61213 -15.82299 -15.60697 -14.87285 -14.53675 -14.16165 -13.93135 -13.86081 -13.58986 -13.37025 -13.19629 -12.82392 -12.45887 -12.35941 -11.94284 -11.69241 -11.41803 -11.28319 -11.10625 -10.95087 -10.54135 -10.36393 -9.96132 -9.85095 -9.75951 -9.33347 -8.88046 -8.13725 -8.09556 -7.92643 -6.56588 -4.16144 1.00932 1.61027 2.37529 2.69665 2.84094 2.96663 3.02053 3.06136 3.15708 3.38894 3.73714 3.96097 3.97211 4.23456 4.50528 4.59228 4.73245 4.94417 5.05228 5.08343 5.15107 5.19394 5.44278 5.51559 5.52679 5.63701 5.78363 5.79311 6.17037 6.20281 6.45991 6.58322 6.59814 6.69832 6.94387 7.29558 7.61201 7.88714 7.90974 8.04546 8.25590 8.72720 9.07826 9.44339 10.54961 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.005348 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.323694 B = 5234.620457 C = 6143.068611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.189 3.811 4 N -0.455 5.455 5 C -0.319 4.319 6 H 0.108 0.892 7 C 0.064 3.936 8 N -0.852 5.852 9 Si 0.866 3.134 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.261 1.261 13 C 0.452 3.548 14 O -0.535 6.535 15 C 0.089 3.911 16 N -0.468 5.468 17 C 0.467 3.533 18 O -0.437 6.437 19 N -0.496 5.496 20 C 0.060 3.940 21 C -0.069 4.069 22 C -0.128 4.128 23 C -0.107 4.107 24 C -0.100 4.100 25 C 0.067 3.933 26 H 0.215 0.785 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.277 0.723 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.403 0.597 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -15.065 8.087 17.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.186 4.186 3 C 0.066 3.934 4 N -0.177 5.177 5 C -0.446 4.446 6 H 0.125 0.875 7 C -0.143 4.143 8 N -0.487 5.487 9 Si 0.692 3.308 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.185 1.185 13 C 0.238 3.762 14 O -0.413 6.413 15 C -0.037 4.037 16 N -0.168 5.168 17 C 0.164 3.836 18 O -0.237 6.237 19 N -0.227 5.227 20 C -0.059 4.059 21 C -0.089 4.089 22 C -0.149 4.149 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.042 4.042 26 H 0.232 0.768 27 H 0.119 0.881 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.261 0.739 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.439 -13.639 8.802 16.296 hybrid contribution 0.171 -1.127 -1.649 2.005 sum -1.268 -14.766 7.153 16.456 Atomic orbital electron populations 1.24796 0.95691 1.00943 1.01056 1.23692 0.94813 0.99943 1.00180 1.18974 0.84223 0.91515 0.98706 1.43639 1.56794 1.13074 1.04189 1.19029 1.38299 0.84219 1.03045 0.87467 1.25360 0.96065 0.97232 0.95692 1.69753 1.39488 1.29420 1.10062 0.87111 0.80808 0.83421 0.79416 1.19803 1.20560 1.18472 1.20260 0.83251 0.89145 0.83519 1.90662 1.47651 1.41914 1.61107 1.21786 1.04338 0.99746 0.77856 1.45264 1.11301 1.53527 1.06710 1.20297 0.84917 0.95275 0.83108 1.84904 1.11963 1.35795 1.91041 1.70650 1.08762 1.23873 1.19398 1.18757 0.92001 1.03327 0.91774 1.20184 0.91031 0.99492 0.98206 1.20830 0.96342 1.01724 0.95966 1.20823 0.98384 1.00883 0.92590 1.19974 0.89956 1.02090 1.00085 1.18604 0.88885 1.04241 0.92424 0.76773 0.88073 0.89792 0.91251 0.87173 0.87217 0.73929 0.85396 0.85437 0.85352 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.08 19.25 29.55 0.57 -2.51 16 2 C -0.18 -3.24 12.93 -37.12 -0.48 -3.72 16 3 C 0.19 3.53 4.27 -6.83 -0.03 3.50 16 4 N -0.45 -10.55 2.15 -117.94 -0.25 -10.80 16 5 C -0.32 -8.82 9.36 -14.93 -0.14 -8.96 16 6 H 0.11 3.41 7.91 -52.49 -0.42 2.99 16 7 C 0.06 1.70 5.26 -17.46 -0.09 1.61 16 8 N -0.85 -23.94 13.96 55.50 0.77 -23.17 16 9 Si 0.87 18.94 25.04 -169.99 -4.26 14.68 16 10 H -0.27 -5.43 6.69 56.52 0.38 -5.06 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.45 10.25 7.63 -10.99 -0.08 10.17 16 14 O -0.53 -14.76 16.30 5.55 0.09 -14.67 16 15 C 0.09 1.48 5.18 -5.20 -0.03 1.45 16 16 N -0.47 -8.26 2.31 -117.26 -0.27 -8.53 16 17 C 0.47 8.27 8.98 -88.92 -0.80 7.47 16 18 O -0.44 -6.53 13.52 -17.52 -0.24 -6.77 16 19 N -0.50 -9.17 11.31 -12.24 -0.14 -9.31 16 20 C 0.06 1.04 7.22 -84.68 -0.61 0.43 16 21 C -0.07 -0.97 10.10 -39.24 -0.40 -1.37 16 22 C -0.13 -1.52 10.01 -39.61 -0.40 -1.92 16 23 C -0.11 -1.32 10.03 -39.51 -0.40 -1.72 16 24 C -0.10 -1.50 10.04 -39.52 -0.40 -1.90 16 25 C 0.07 1.16 6.87 -83.87 -0.58 0.59 16 26 H 0.22 2.28 7.80 -54.08 -0.42 1.86 16 27 H 0.10 2.01 3.61 -51.93 -0.19 1.82 16 28 H 0.08 1.22 6.69 -51.93 -0.35 0.87 16 29 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.11 1.54 7.48 -51.92 -0.39 1.15 16 31 H 0.11 1.48 7.41 -51.93 -0.38 1.09 16 32 H 0.40 3.26 9.06 45.56 0.41 3.67 16 33 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -36.56 323.14 -5.86 -42.42 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -2.58 Total: 8.17 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -3.86 Total: 3.12 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.11 Total: -51.81 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.15 Total: -21.44 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.26 Total: 14.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.56 -5.86 -42.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490997300.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.452 kcal (2) G-P(sol) polarization free energy of solvation -36.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds