Wall clock time and date at job start Fri Apr 10 2020 17:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47333 * 332.25388 * 3 2 1 5 5 C 1.36901 * 120.00034 * 272.10559 * 4 3 2 6 6 H 1.07997 * 119.99647 * 192.76943 * 5 4 3 7 7 C 1.39019 * 120.00189 * 12.76194 * 5 4 3 8 8 N 1.31386 * 119.99597 * 13.57475 * 7 5 4 9 9 Si 1.86794 * 120.00099 * 193.56950 * 7 5 4 10 10 H 1.48495 * 109.47445 * 90.00352 * 9 7 5 11 11 H 1.48504 * 109.47142 * 210.00632 * 9 7 5 12 12 H 1.48499 * 109.47197 * 330.00227 * 9 7 5 13 13 C 1.34775 * 120.00080 * 92.09602 * 4 3 2 14 14 O 1.21632 * 120.00111 * 184.60450 * 13 4 3 15 15 C 1.47394 * 119.99693 * 4.61380 * 13 4 3 16 16 C 1.40219 * 119.95328 * 128.02722 * 15 13 4 17 17 C 1.36187 * 120.48492 * 179.97438 * 16 15 13 18 18 C 1.40043 * 120.09776 * 0.04387 * 17 16 15 19 19 N 1.35551 * 133.26194 * 179.97438 * 18 17 16 20 20 C 1.30928 * 109.71591 * 179.97438 * 19 18 17 21 21 O 1.35196 * 125.01158 * 179.97438 * 20 19 18 22 22 N 1.36260 * 109.97125 * 0.23544 * 20 19 18 23 23 C 1.46505 * 126.39506 * 179.76663 * 22 20 19 24 24 C 1.38562 * 107.20707 * 359.63170 * 22 20 19 25 25 C 1.38193 * 133.89723 * 180.09319 * 24 22 20 26 26 H 4.40640 * 5.51262 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.46982 * 212.25671 * 3 2 1 28 28 H 1.08996 * 109.47262 * 92.25575 * 3 2 1 29 29 H 0.97004 * 119.99596 * 180.02562 * 8 7 5 30 30 H 1.07992 * 119.75995 * 359.97438 * 16 15 13 31 31 H 1.08000 * 119.95112 * 180.02562 * 17 16 15 32 32 H 0.96700 * 113.99805 * 90.03111 * 21 20 19 33 33 H 1.09001 * 109.46985 * 90.02184 * 23 22 20 34 34 H 1.09001 * 109.46874 * 210.02403 * 23 22 20 35 35 H 1.09004 * 109.47076 * 330.02725 * 23 22 20 36 36 H 1.08008 * 120.20386 * 0.30656 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2215 0.6430 5 6 3.3221 -1.2538 1.9988 6 1 3.8702 -2.0683 2.4489 7 6 2.8068 -0.2382 2.7960 8 7 1.9246 0.6010 2.3022 9 14 3.3683 -0.0668 4.5693 10 1 4.5532 0.8263 4.6293 11 1 2.2696 0.5132 5.3827 12 1 3.7286 -1.4038 5.1059 13 6 3.4003 -2.3141 -0.1001 14 8 3.7257 -3.3535 0.4413 15 6 3.2965 -2.2493 -1.5690 16 6 4.3673 -2.6783 -2.3661 17 6 4.2828 -2.6237 -3.7243 18 6 3.1216 -2.1359 -4.3366 19 7 2.7552 -1.9654 -5.6305 20 6 1.5458 -1.4667 -5.6850 21 8 0.8780 -1.1740 -6.8235 22 7 1.0618 -1.2808 -4.4249 23 6 -0.2519 -0.7383 -4.0695 24 6 2.0429 -1.7036 -3.5425 25 6 2.1321 -1.7611 -2.1646 26 1 -1.0498 -0.0003 0.0000 27 1 3.0090 0.8699 0.5485 28 1 3.0094 0.0413 -1.0268 29 1 1.5653 1.3098 2.8584 30 1 5.2656 -3.0548 -1.8997 31 1 5.1126 -2.9568 -4.3300 32 1 0.3472 -1.9056 -7.1672 33 1 -0.9725 -1.5525 -3.9927 34 1 -0.1845 -0.2212 -3.1123 35 1 -0.5759 -0.0377 -4.8391 36 1 1.3060 -1.4305 -1.5524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491014981.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:21 Heat of formation + Delta-G solvation = 67.989534 kcal Electronic energy + Delta-G solvation = -23865.801945 eV Core-core repulsion = 20318.450705 eV Total energy + Delta-G solvation = -3547.351240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.106 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.24534 -40.86413 -38.95014 -37.41174 -37.04823 -35.35995 -33.96472 -33.16434 -31.58890 -30.30365 -28.30202 -27.94494 -26.73616 -24.42282 -23.69297 -21.97542 -21.26115 -19.79552 -19.54510 -18.73526 -18.29875 -18.01156 -17.75288 -17.10956 -16.46970 -16.03932 -15.92148 -15.57137 -15.22801 -15.16549 -14.82786 -14.20408 -14.06460 -13.99939 -13.89495 -13.53028 -13.39621 -12.94318 -12.80432 -12.61476 -12.52786 -12.28596 -12.11101 -11.46494 -11.33342 -11.16921 -10.97366 -10.60254 -10.47037 -9.93642 -9.41113 -9.10258 -8.30274 -5.95822 -0.35320 0.37746 1.19799 1.30661 1.43208 1.46632 1.54557 1.94125 2.08541 2.31823 2.39101 2.62195 2.74850 3.04186 3.13040 3.40083 3.78310 3.86174 3.93957 3.99202 4.22937 4.30576 4.36066 4.49048 4.59350 4.65465 4.66949 5.01625 5.04351 5.20713 5.33698 5.42342 5.43229 5.45969 5.66893 5.72510 5.99254 6.39992 6.58864 6.66008 7.07522 7.14018 7.33219 7.89420 8.62050 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.023287 B = 0.004710 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.081200 B = 5943.606909 C = 6877.897858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.132 4.132 3 C 0.234 3.766 4 N -0.436 5.436 5 C -0.347 4.347 6 H 0.081 0.919 7 C 0.003 3.997 8 N -0.871 5.871 9 Si 0.992 3.008 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.277 1.277 13 C 0.475 3.525 14 O -0.625 6.625 15 C -0.101 4.101 16 C -0.086 4.086 17 C -0.066 4.066 18 C 0.056 3.944 19 N -0.519 5.519 20 C 0.462 3.538 21 O -0.436 6.436 22 N -0.488 5.488 23 C 0.067 3.933 24 C 0.041 3.959 25 C -0.081 4.081 26 H 0.235 0.765 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.274 0.726 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.433 0.567 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 1.824 -14.508 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.134 4.134 3 C 0.112 3.888 4 N -0.152 5.152 5 C -0.474 4.474 6 H 0.099 0.901 7 C -0.200 4.200 8 N -0.508 5.508 9 Si 0.816 3.184 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.202 1.202 13 C 0.266 3.734 14 O -0.514 6.514 15 C -0.106 4.106 16 C -0.107 4.107 17 C -0.085 4.085 18 C -0.064 4.064 19 N -0.251 5.251 20 C 0.159 3.841 21 O -0.242 6.242 22 N -0.190 5.190 23 C -0.073 4.073 24 C -0.067 4.067 25 C -0.103 4.103 26 H 0.252 0.748 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.177 0.823 32 H 0.296 0.704 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.133 0.867 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.795 1.968 -14.864 16.074 hybrid contribution -0.883 -0.098 1.756 1.968 sum -6.678 1.870 -13.108 14.829 Atomic orbital electron populations 1.25047 0.96117 1.00647 1.05220 1.23034 0.94521 0.99695 0.96159 1.18410 0.85385 0.88927 0.96102 1.43836 1.54637 1.09885 1.06839 1.19721 1.35066 1.10466 0.82161 0.90105 1.26027 0.94592 0.95550 1.03806 1.70080 1.25284 1.17393 1.38040 0.84945 0.78213 0.78391 0.76868 1.19068 1.19937 1.20242 1.18393 0.84514 0.83446 0.87096 1.90587 1.55736 1.30910 1.74145 1.19672 0.95903 1.02537 0.92455 1.20708 0.98126 0.99054 0.92793 1.20035 0.96066 0.99362 0.93086 1.19128 0.95530 1.03315 0.88383 1.70551 1.11573 1.23121 1.19890 1.20408 0.88052 0.95329 0.80291 1.84748 1.64095 1.42786 1.32526 1.45707 1.15654 1.52638 1.04970 1.22346 0.79677 1.01054 1.04232 1.18415 0.91554 1.04958 0.91759 1.20323 0.98529 1.00562 0.90865 0.74813 0.88402 0.90257 0.91492 0.84308 0.82286 0.70361 0.88638 0.89765 0.86688 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.29 18.83 74.32 1.40 -7.89 16 2 C -0.13 -5.63 8.60 31.12 0.27 -5.36 16 3 C 0.23 10.55 4.75 84.57 0.40 10.95 16 4 N -0.44 -22.67 2.58 -649.20 -1.68 -24.35 16 5 C -0.35 -19.37 9.43 84.09 0.79 -18.58 16 6 H 0.08 4.84 7.30 -2.91 -0.02 4.82 16 7 C 0.00 0.17 5.14 84.95 0.44 0.61 16 8 N -0.87 -43.46 8.52 21.68 0.18 -43.27 16 9 Si 0.99 41.28 29.57 68.60 2.03 43.31 16 10 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 12 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 13 C 0.47 24.44 7.13 86.65 0.62 25.05 16 14 O -0.63 -36.83 16.69 -4.13 -0.07 -36.90 16 15 C -0.10 -4.18 4.80 -20.06 -0.10 -4.28 16 16 C -0.09 -3.05 9.66 22.27 0.22 -2.84 16 17 C -0.07 -2.04 10.03 22.23 0.22 -1.82 16 18 C 0.06 1.82 7.22 39.62 0.29 2.10 16 19 N -0.52 -15.80 11.29 -306.21 -3.46 -19.26 16 20 C 0.46 11.29 8.98 179.75 1.61 12.90 16 21 O -0.44 -6.85 13.51 -84.76 -1.14 -7.99 16 22 N -0.49 -12.13 3.23 -655.31 -2.11 -14.24 16 23 C 0.07 1.09 11.12 127.77 1.42 2.52 16 24 C 0.04 1.34 6.87 38.68 0.27 1.60 16 25 C -0.08 -3.00 7.64 22.59 0.17 -2.83 16 26 H 0.24 6.44 7.80 -4.43 -0.03 6.41 16 27 H 0.10 4.67 6.39 -2.38 -0.02 4.66 16 28 H 0.08 3.23 5.85 -2.39 -0.01 3.22 16 29 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 30 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.43 1.75 9.06 -74.06 -0.67 1.08 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 36 H 0.13 5.01 4.59 -2.91 -0.01 5.00 16 Total: -1.00 -74.14 316.71 2.24 -71.89 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.48 Total: 18.66 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 8.02 Total: 12.15 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -7.06 Total: -101.12 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -1.21 Total: -44.89 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -74.14 2.24 -71.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014981.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.884 kcal (2) G-P(sol) polarization free energy of solvation -74.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds