Wall clock time and date at job start Fri Apr 10 2020 17:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47408 * 2 1 4 4 C 1.46494 * 120.00265 * 270.00305 * 3 2 1 5 5 C 1.50696 * 109.46934 * 269.99732 * 4 3 2 6 6 H 1.08000 * 120.00413 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00029 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00075 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47082 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47269 * 119.99912 * 9 7 5 12 12 H 1.48502 * 109.47470 * 240.00241 * 9 7 5 13 13 C 1.34781 * 120.00012 * 89.99654 * 3 2 1 14 14 O 1.21275 * 120.00274 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99811 * 0.02562 * 13 3 2 16 16 S 1.81398 * 109.47136 * 179.97438 * 15 13 3 17 17 C 1.81399 * 103.00088 * 179.97438 * 16 15 13 18 18 C 1.52999 * 109.46810 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46953 * 180.02562 * 18 17 16 20 20 N 1.33311 * 126.54827 * 269.69558 * 19 18 17 21 21 N 1.29004 * 107.35453 * 179.83275 * 20 19 18 22 22 N 1.28786 * 108.71955 * 0.42961 * 21 20 19 23 23 H 0.97001 * 125.43979 * 179.72847 * 22 21 20 24 24 N 1.28877 * 109.10253 * 359.72360 * 22 21 20 25 25 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47287 * 299.99842 * 1 2 3 27 27 H 1.09001 * 109.47538 * 59.99919 * 1 2 3 28 28 H 1.09001 * 109.47287 * 240.00158 * 2 1 3 29 29 H 1.09005 * 109.46832 * 119.99965 * 2 1 3 30 30 H 1.09001 * 109.47382 * 29.99441 * 4 3 2 31 31 H 1.09003 * 109.47564 * 149.99561 * 4 3 2 32 32 H 0.97001 * 119.99721 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47378 * 59.99871 * 15 13 3 34 34 H 1.09000 * 109.47022 * 299.99473 * 15 13 3 35 35 H 1.09000 * 109.47070 * 300.00061 * 17 16 15 36 36 H 1.09001 * 109.46593 * 60.00058 * 17 16 15 37 37 H 1.09000 * 109.47486 * 299.99969 * 18 17 16 38 38 H 1.09001 * 109.47362 * 60.00691 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1491 2.3896 -2.8778 8 7 3.3488 3.1250 -3.6185 9 14 5.9131 2.0955 -3.4175 10 1 6.6008 1.2405 -2.4169 11 1 5.9201 1.4164 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9922 1.3059 2.4724 16 16 2.3857 2.4170 3.8512 17 6 2.0260 1.4005 5.3099 18 6 2.3126 2.2080 6.5774 19 6 2.0144 1.3633 7.7893 20 7 0.8493 1.2800 8.4318 21 7 1.0064 0.4512 9.4078 22 7 2.2225 0.0275 9.3985 23 1 2.6034 -0.6027 10.0299 24 7 2.8523 0.5746 8.4161 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.5817 1.6877 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 3.6749 3.5154 -4.4444 33 1 2.6227 0.4186 2.5300 34 1 0.9443 1.0115 2.5302 35 1 0.9770 1.1044 5.2967 36 1 2.6550 0.5104 5.2964 37 1 3.3617 2.5038 6.5904 38 1 1.6839 3.0983 6.5911 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603341319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:41 Heat of formation + Delta-G solvation = 84.048541 kcal Electronic energy + Delta-G solvation = -20949.390300 eV Core-core repulsion = 17570.472133 eV Total energy + Delta-G solvation = -3378.918167 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.84134 -39.03308 -35.53283 -35.32882 -34.32289 -32.86385 -31.72457 -30.28490 -29.85478 -26.71567 -25.43496 -24.86024 -23.08123 -22.68819 -22.02803 -19.52749 -18.52514 -17.50897 -16.65199 -16.35455 -16.31267 -15.70016 -15.46304 -14.85109 -14.75327 -14.26600 -14.05494 -13.46832 -13.37385 -13.15494 -12.86030 -12.72586 -12.26043 -12.03746 -11.94032 -11.74292 -11.64023 -11.60689 -11.34078 -11.20694 -10.91523 -10.77610 -10.69276 -10.56297 -10.14354 -9.84714 -9.63395 -9.05487 -8.44224 -7.74658 -7.52665 -6.05008 -4.09729 0.75337 1.37275 1.78281 1.98110 2.57150 3.29537 3.30225 3.38161 3.42338 3.57413 3.88512 3.93738 4.44480 4.59346 4.70597 4.93236 4.97279 5.14021 5.19318 5.20224 5.29770 5.31448 5.42226 5.49723 5.58225 5.64088 5.72336 5.97534 6.03959 6.18332 6.43576 7.00886 7.42064 7.49930 7.85420 7.91090 8.21758 8.32887 8.86508 9.01808 9.55411 11.03168 Molecular weight = 299.12amu Principal moments of inertia in cm(-1) A = 0.025637 B = 0.002660 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.909029 B =10524.253197 C =10984.063696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.521 3.479 14 O -0.520 6.520 15 C -0.124 4.124 16 S -0.166 6.166 17 C -0.110 4.110 18 C -0.006 4.006 19 C 0.183 3.817 20 N -0.272 5.272 21 N -0.053 5.053 22 N -0.231 5.231 23 H 0.474 0.526 24 N -0.296 5.296 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.555 -9.765 22.133 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.306 3.694 14 O -0.396 6.396 15 C -0.275 4.275 16 S 0.061 5.939 17 C -0.260 4.260 18 C -0.047 4.047 19 C -0.102 4.102 20 N -0.145 5.145 21 N -0.049 5.049 22 N -0.077 5.077 23 H 0.328 0.672 24 N -0.148 5.148 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.357 -8.210 22.320 24.178 hybrid contribution 0.979 -1.944 -0.304 2.198 sum -3.378 -10.154 22.017 24.479 Atomic orbital electron populations 1.22230 0.96678 1.01476 1.02452 1.21444 0.93589 0.84148 1.02724 1.48193 1.63704 1.13270 1.07357 1.19316 0.96406 0.93712 0.77761 1.21457 0.96851 1.31946 1.06236 0.92399 1.24938 0.97889 0.94901 0.96391 1.69944 1.35590 1.33466 1.14326 0.86440 0.84607 0.78104 0.78263 1.19788 1.20995 1.20824 1.19351 0.79264 0.86823 0.84008 1.90720 1.44980 1.17460 1.86429 1.23681 1.05718 1.02009 0.96112 1.87507 1.88462 1.21427 0.96525 1.23404 1.05069 1.01688 0.95849 1.19599 1.05199 0.95656 0.84230 1.25626 0.86343 0.98345 0.99853 1.75931 1.22760 1.12929 1.02906 1.78985 1.01203 1.08253 1.16426 1.47825 1.06669 1.31861 1.21369 0.67181 1.74760 1.25811 1.12650 1.01579 0.92115 0.93097 0.91840 0.89705 0.91911 0.94820 0.93728 0.92746 0.87817 0.87833 0.89612 0.89825 0.87525 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.15 0.38 -1.80 16 2 C 0.11 1.62 5.93 -4.05 -0.02 1.59 16 3 N -0.59 -12.27 2.46 -175.07 -0.43 -12.70 16 4 C 0.25 6.38 5.16 -5.20 -0.03 6.36 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 C 0.52 10.73 7.69 -10.98 -0.08 10.65 16 14 O -0.52 -13.14 15.44 5.56 0.09 -13.06 16 15 C -0.12 -1.81 4.98 36.01 0.18 -1.63 16 16 S -0.17 -2.37 20.87 -107.50 -2.24 -4.62 16 17 C -0.11 -1.08 5.92 37.16 0.22 -0.86 16 18 C -0.01 -0.05 5.85 -27.88 -0.16 -0.21 16 19 C 0.18 1.77 7.62 -156.63 -1.19 0.57 16 20 N -0.27 -2.95 12.50 32.44 0.41 -2.54 16 21 N -0.05 -0.49 13.48 60.35 0.81 0.33 16 22 N -0.23 -1.49 7.91 60.34 0.48 -1.01 16 23 H 0.47 0.79 8.96 -340.52 -3.05 -2.26 16 24 N -0.30 -2.59 12.36 32.46 0.40 -2.19 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.10 1.31 7.40 -51.92 -0.38 0.93 16 34 H 0.10 1.26 7.19 -51.92 -0.37 0.88 16 35 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -35.64 343.16 -8.56 -44.20 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -7.82 Total: -5.80 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.13 Total: 1.17 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 2.40 Total: -43.89 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.06 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -2.37 SS G_CDS: -2.24 Total: -4.62 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.64 -8.56 -44.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603341319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.251 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds