Wall clock time and date at job start Fri Apr 10 2020 17:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99307 * 2 1 4 4 C 1.53002 * 109.46849 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47325 * 64.99574 * 4 3 2 6 6 C 1.46493 * 120.00444 * 270.27624 * 5 4 3 7 7 C 1.50702 * 109.47427 * 269.72511 * 6 5 4 8 8 H 1.07999 * 119.99972 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99945 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00264 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99887 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46951 * 89.99923 * 11 9 7 13 13 H 1.48499 * 109.47146 * 210.00270 * 11 9 7 14 14 H 1.48501 * 109.47153 * 330.00084 * 11 9 7 15 15 C 1.34784 * 119.99635 * 90.00335 * 5 4 3 16 16 O 1.21279 * 119.99925 * 359.97438 * 15 5 4 17 17 C 1.50700 * 119.99961 * 180.02562 * 15 5 4 18 18 N 1.46497 * 109.47128 * 180.02562 * 17 15 5 19 19 C 1.34765 * 124.17471 * 269.72220 * 18 17 15 20 20 O 1.21234 * 127.16034 * 0.02562 * 19 18 17 21 21 C 1.51582 * 105.68640 * 179.97438 * 19 18 17 22 22 N 1.47317 * 103.59063 * 0.31745 * 21 19 18 23 23 C 1.33787 * 124.17954 * 90.02516 * 18 17 15 24 24 O 1.21541 * 123.77302 * 359.95886 * 23 18 17 25 25 H 1.09000 * 109.47086 * 60.00435 * 1 2 3 26 26 H 1.09009 * 109.46809 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47422 * 299.99800 * 1 2 3 28 28 H 1.08997 * 109.47764 * 60.00405 * 3 2 1 29 29 H 1.09004 * 109.47540 * 299.99740 * 3 2 1 30 30 H 1.09003 * 109.46903 * 304.99724 * 4 3 2 31 31 H 1.09004 * 109.47175 * 185.00396 * 4 3 2 32 32 H 1.09002 * 109.47192 * 29.72648 * 6 5 4 33 33 H 1.08996 * 109.47342 * 149.72358 * 6 5 4 34 34 H 0.96991 * 120.00123 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46932 * 300.00223 * 17 15 5 36 36 H 1.08997 * 109.47392 * 59.99562 * 17 15 5 37 37 H 1.09000 * 110.76742 * 241.71714 * 21 19 18 38 38 H 1.08997 * 110.56696 * 118.83271 * 21 19 18 39 39 H 0.96993 * 126.68863 * 179.76444 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2526 6 6 4.0995 -0.8922 -1.3445 7 6 5.4948 -1.3036 -0.9509 8 1 6.2170 -0.5548 -0.6608 9 6 5.8491 -2.6361 -0.9600 10 7 4.9695 -3.5480 -1.3127 11 14 7.5785 -3.1461 -0.4714 12 1 7.6251 -3.3998 0.9910 13 1 7.9543 -4.3838 -1.2009 14 1 8.5308 -2.0600 -0.8160 15 6 4.2615 1.3339 -2.3218 16 8 4.1537 2.5396 -2.2473 17 6 4.7138 0.6959 -3.6099 18 7 4.9599 1.7372 -4.6106 19 6 4.0279 2.1988 -5.4676 20 8 2.8716 1.8445 -5.5526 21 6 4.7258 3.2540 -6.3026 22 7 6.1009 3.2600 -5.7741 23 6 6.1390 2.3433 -4.7903 24 8 7.1338 2.0926 -4.1386 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8514 0.5684 0.8410 31 1 3.9784 2.1767 0.0890 32 1 3.3796 -1.3611 -0.6737 33 1 3.9023 -1.2098 -2.3684 34 1 5.2189 -4.4853 -1.3195 35 1 5.6327 0.1361 -3.4350 36 1 3.9397 0.0193 -3.9718 37 1 4.2575 4.2285 -6.1640 38 1 4.7209 2.9739 -7.3559 39 1 6.8355 3.8164 -6.0766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706387551.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:54 Heat of formation + Delta-G solvation = -111.861017 kcal Electronic energy + Delta-G solvation = -25419.501552 eV Core-core repulsion = 21557.042487 eV Total energy + Delta-G solvation = -3862.459065 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16741 -39.15450 -38.39103 -37.38369 -35.92491 -35.00480 -34.38306 -32.59911 -30.30714 -28.24699 -27.35738 -26.97353 -25.77496 -22.94058 -22.80452 -22.61762 -20.64944 -18.62320 -17.86438 -17.27986 -16.61074 -16.53027 -16.36859 -15.96004 -15.60350 -15.37155 -15.15937 -14.81985 -14.49114 -14.34031 -14.02346 -14.00693 -13.81730 -13.41017 -12.79986 -12.44900 -12.04979 -11.94845 -11.52349 -11.50019 -11.40229 -10.92570 -10.84931 -10.83165 -10.53165 -10.21315 -10.13234 -10.00802 -9.69971 -9.50620 -9.37266 -8.94650 -8.48762 -7.75328 -6.12363 -4.19995 1.75953 2.27458 3.12673 3.22516 3.25746 3.28736 3.35596 3.42082 3.89197 4.07888 4.17367 4.40201 4.82514 4.92204 5.18495 5.24057 5.30337 5.40501 5.51346 5.61757 5.66830 5.69154 5.70838 5.74238 5.88078 5.98263 6.07431 6.36768 6.78049 6.79337 7.19439 7.26586 7.47675 7.48921 7.56828 7.83443 8.10563 8.23824 8.30439 8.77581 8.94591 9.47860 10.94150 Molecular weight = 299.14amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.006482 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.625245 B = 4318.725747 C = 6153.098257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.123 3.877 5 N -0.580 5.580 6 C 0.236 3.764 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.889 5.889 11 Si 0.894 3.106 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.507 3.493 16 O -0.573 6.573 17 C 0.105 3.895 18 N -0.557 5.557 19 C 0.524 3.476 20 O -0.472 6.472 21 C 0.067 3.933 22 N -0.733 5.733 23 C 0.705 3.295 24 O -0.534 6.534 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.265 0.735 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 11.124 -7.267 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.001 4.001 5 N -0.310 5.310 6 C 0.117 3.883 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.722 3.278 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.293 3.707 16 O -0.454 6.454 17 C -0.019 4.019 18 N -0.302 5.302 19 C 0.311 3.689 20 O -0.342 6.342 21 C -0.061 4.061 22 N -0.398 5.398 23 C 0.406 3.594 24 O -0.406 6.406 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -4.353 10.914 -6.851 13.602 hybrid contribution 0.946 -0.002 0.203 0.967 sum -3.407 10.912 -6.648 13.225 Atomic orbital electron populations 1.22684 0.82117 1.02431 0.99170 1.88054 1.18715 1.27358 1.95205 1.23011 0.95187 0.84987 0.99775 1.21355 0.91096 0.99650 0.87982 1.48100 1.63059 1.10036 1.09834 1.19565 0.97696 0.72394 0.98685 1.21539 0.97130 0.92542 1.46866 0.91977 1.24919 0.97526 0.96330 0.94844 1.69934 1.34273 1.01280 1.47212 0.86542 0.84455 0.78182 0.78641 1.20535 1.21096 1.19600 1.20464 0.77428 0.86966 0.85807 1.90591 1.55809 1.14526 1.84515 1.21611 1.06497 0.87991 0.85826 1.45925 1.11916 1.38245 1.34132 1.20834 0.85628 0.82059 0.80372 1.90804 1.14629 1.60416 1.68388 1.22393 0.82899 1.00811 0.99995 1.45339 1.12925 1.43023 1.38559 1.15802 0.83161 0.79596 0.80851 1.91044 1.32748 1.66809 1.49971 0.94608 0.89817 0.94747 0.93168 0.93423 0.89202 0.89459 0.92726 0.94893 0.92559 0.84390 0.85995 0.86182 0.86204 0.71751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.82 9.50 -35.23 -0.33 -7.16 16 3 C 0.05 0.81 6.28 37.16 0.23 1.04 16 4 C 0.12 2.33 5.81 -4.04 -0.02 2.30 16 5 N -0.58 -12.58 2.42 -175.06 -0.42 -13.00 16 6 C 0.24 5.71 4.78 -5.20 -0.02 5.68 16 7 C -0.54 -14.32 9.27 -34.44 -0.32 -14.64 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -24.76 13.29 55.43 0.74 -24.03 16 11 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 15 C 0.51 10.96 7.74 -10.98 -0.09 10.87 16 16 O -0.57 -13.09 16.01 5.56 0.09 -13.00 16 17 C 0.10 2.04 4.74 -5.20 -0.02 2.01 16 18 N -0.56 -9.50 2.09 -122.03 -0.26 -9.76 16 19 C 0.52 7.69 8.31 -10.56 -0.09 7.60 16 20 O -0.47 -8.16 17.76 5.60 0.10 -8.06 16 21 C 0.07 0.59 7.97 -4.31 -0.03 0.55 16 22 N -0.73 -7.76 6.58 -65.73 -0.43 -8.19 16 23 C 0.71 11.65 8.62 -88.02 -0.76 10.90 16 24 O -0.53 -11.00 17.48 5.33 0.09 -10.91 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.70 8.07 -51.93 -0.42 1.28 16 31 H 0.09 1.60 7.42 -51.93 -0.39 1.21 16 32 H 0.05 1.42 7.09 -51.93 -0.37 1.05 16 33 H 0.03 0.81 6.44 -51.93 -0.33 0.48 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.14 2.86 7.71 -51.93 -0.40 2.46 16 36 H 0.12 2.25 7.25 -51.93 -0.38 1.87 16 37 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.44 3.27 8.96 -40.82 -0.37 2.90 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -34.99 342.08 -5.56 -40.55 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.15 Total: 2.78 kcal Atomic # 6 Polarization: 29.70 SS G_CDS: -0.11 Total: 29.59 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.38 Total: -54.98 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.05 Total: -39.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.99 -5.56 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706387551.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.309 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds