Wall clock time and date at job start Fri Apr 10 2020 17:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48496 * 109.47116 * 270.00383 * 3 2 1 5 5 H 1.48510 * 109.46673 * 30.00088 * 3 2 1 6 6 H 1.48498 * 109.47559 * 149.99675 * 3 2 1 7 7 C 1.37880 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47174 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00271 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 9 14 14 O 1.45199 * 109.46928 * 180.02562 * 13 11 10 15 15 C 1.34230 * 116.99614 * 179.97438 * 14 13 11 16 16 O 1.20824 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99717 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47116 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47081 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.48115 * 54.97739 * 19 18 17 21 21 C 1.53092 * 109.48046 * 175.00024 * 19 18 17 22 22 C 1.53180 * 109.16358 * 177.58789 * 21 19 18 23 23 C 1.53176 * 109.03775 * 303.02270 * 22 21 19 24 24 C 1.53089 * 109.16226 * 56.97769 * 23 22 21 25 25 O 1.42895 * 109.41879 * 302.39026 * 24 23 22 26 26 H 0.97002 * 119.99739 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 28 28 H 1.09001 * 109.47380 * 300.00095 * 9 7 2 29 29 H 0.97005 * 120.00266 * 0.02562 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 31 31 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 32 32 H 1.09000 * 109.47303 * 300.00327 * 17 15 14 33 33 H 1.09003 * 109.46535 * 60.00663 * 17 15 14 34 34 H 1.09000 * 109.47151 * 300.00236 * 18 17 15 35 35 H 1.09003 * 109.46860 * 60.00013 * 18 17 15 36 36 H 1.08996 * 109.52468 * 297.49364 * 21 19 18 37 37 H 1.09000 * 109.52372 * 57.68340 * 21 19 18 38 38 H 1.08999 * 109.54281 * 62.89009 * 22 21 19 39 39 H 1.09002 * 109.54559 * 183.06222 * 22 21 19 40 40 H 1.09000 * 109.51921 * 176.88810 * 23 22 21 41 41 H 1.09008 * 109.51723 * 297.07194 * 23 22 21 42 42 H 1.08997 * 109.47941 * 62.37960 * 24 23 22 43 43 H 1.09002 * 109.47378 * 182.40739 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 5.3248 -2.8218 -0.0009 12 8 6.1129 -1.9000 -0.0014 13 6 5.8270 -4.2426 -0.0014 14 8 7.2790 -4.2427 -0.0018 15 6 7.8883 -5.4387 -0.0017 16 8 7.2302 -6.4520 -0.0018 17 6 9.3933 -5.5177 -0.0027 18 6 9.8271 -6.9849 -0.0031 19 6 11.3549 -7.0651 -0.0035 20 1 11.7490 -6.4953 0.8380 21 6 11.7895 -8.5276 0.1220 22 6 13.3180 -8.6051 0.0603 23 6 13.7983 -7.9659 -1.2463 24 6 13.2861 -6.5251 -1.3189 25 8 11.8603 -6.5225 -1.2251 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6798 0.8895 28 1 3.8745 -0.6810 -0.8905 29 1 3.3693 -3.3127 0.0001 30 1 5.4631 -4.7564 -0.8912 31 1 5.4642 -4.7565 0.8888 32 1 9.7825 -5.0239 -0.8932 33 1 9.7836 -5.0233 0.8869 34 1 9.4379 -7.4791 0.8872 35 1 9.4367 -7.4790 -0.8928 36 1 11.4425 -8.9304 1.0736 37 1 11.3621 -9.1062 -0.6970 38 1 13.7449 -8.0681 0.9073 39 1 13.6320 -9.6483 0.0944 40 1 14.8880 -7.9671 -1.2733 41 1 13.4115 -8.5332 -2.0930 42 1 13.7058 -5.9482 -0.4947 43 1 13.5890 -6.0790 -2.2662 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732380446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:28 Heat of formation + Delta-G solvation = -191.735420 kcal Electronic energy + Delta-G solvation = -23381.580869 eV Core-core repulsion = 19619.198534 eV Total energy + Delta-G solvation = -3762.382336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.67512 -39.81225 -38.85429 -36.51765 -34.40992 -34.36730 -34.03598 -32.43257 -30.82733 -29.43550 -27.34305 -26.10850 -24.37244 -22.55872 -21.97014 -20.82448 -20.48010 -20.11000 -17.88082 -17.51531 -17.12266 -16.60030 -16.57920 -16.23275 -15.55414 -15.15973 -15.07465 -14.95912 -14.82863 -14.15534 -14.05583 -13.91336 -13.23058 -13.09838 -12.92995 -12.68557 -12.42805 -12.38930 -12.18575 -12.05550 -11.64799 -11.60705 -11.32639 -11.12957 -11.07114 -10.82771 -10.73145 -10.69820 -10.58556 -10.00155 -9.83346 -9.54318 -9.33477 -8.81862 -8.26595 -6.24274 -4.27318 2.11933 2.39517 3.03943 3.25513 3.32253 3.36068 3.40231 3.86324 4.23333 4.30964 4.32626 4.39748 4.45617 4.61782 4.69422 4.83338 4.87448 4.95118 5.04140 5.10469 5.14724 5.18176 5.19294 5.24230 5.29149 5.33082 5.39716 5.48616 5.56113 5.60712 5.67886 5.80658 5.89361 6.33860 6.73446 6.84719 7.01006 7.09988 7.31815 7.65095 8.05249 8.41496 8.68344 8.80241 9.34836 10.87489 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.044533 B = 0.002009 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.597167 B =13934.855668 C =14398.095079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.502 3.498 12 O -0.537 6.537 13 C 0.049 3.951 14 O -0.331 6.331 15 C 0.461 3.539 16 O -0.513 6.513 17 C -0.110 4.110 18 C -0.100 4.100 19 C 0.090 3.910 20 H 0.062 0.938 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.158 4.158 24 C 0.061 3.939 25 O -0.377 6.377 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.399 0.601 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.631 -17.687 0.216 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.414 6.414 13 C -0.029 4.029 14 O -0.246 6.246 15 C 0.304 3.696 16 O -0.402 6.402 17 C -0.148 4.148 18 C -0.138 4.138 19 C 0.032 3.968 20 H 0.080 0.920 21 C -0.188 4.188 22 C -0.161 4.161 23 C -0.196 4.196 24 C -0.016 4.016 25 O -0.297 6.297 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.233 0.767 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 26.657 -17.086 0.075 31.663 hybrid contribution 0.011 0.284 0.173 0.333 sum 26.668 -16.802 0.248 31.521 Atomic orbital electron populations 1.69878 1.06212 1.27499 1.49171 1.24791 0.94809 0.99194 0.93788 0.86811 0.80566 0.83175 0.79112 1.19780 1.20839 1.18473 1.21073 0.88350 0.95348 1.53647 0.90121 1.19554 0.95353 0.78000 0.97068 1.46069 1.04893 1.11518 1.72557 1.19951 0.83678 0.89500 0.78380 1.90698 1.55339 1.45708 1.49684 1.22807 0.78102 0.97175 1.04789 1.86568 1.21686 1.32899 1.83409 1.23875 0.92318 0.81213 0.72156 1.90665 1.67287 1.36402 1.45840 1.21361 0.87212 0.99592 1.06624 1.21471 0.92746 0.94830 1.04729 1.22126 0.93860 0.93418 0.87350 0.92025 1.22199 0.96220 0.97212 1.03213 1.21591 0.95556 1.01300 0.97624 1.22204 1.01149 0.97519 0.98687 1.22561 0.81237 0.95604 1.02210 1.87960 1.20559 1.82688 1.38454 0.92190 0.95421 0.95880 0.76711 0.88330 0.88358 0.86704 0.87627 0.89437 0.89898 0.90657 0.90771 0.91811 0.91426 0.90954 0.90996 0.93165 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.55 -14.86 9.83 -34.44 -0.34 -15.20 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.41 4.50 -5.20 -0.02 5.39 16 10 N -0.70 -14.01 5.55 -61.47 -0.34 -14.35 16 11 C 0.50 9.67 7.91 -10.98 -0.09 9.59 16 12 O -0.54 -12.51 16.50 -14.10 -0.23 -12.74 16 13 C 0.05 0.72 5.94 36.01 0.21 0.94 16 14 O -0.33 -5.07 9.76 -45.90 -0.45 -5.52 16 15 C 0.46 5.96 7.96 36.01 0.29 6.25 16 16 O -0.51 -7.52 15.73 -18.75 -0.29 -7.81 16 17 C -0.11 -1.02 5.71 -27.88 -0.16 -1.18 16 18 C -0.10 -0.82 4.21 -26.73 -0.11 -0.93 16 19 C 0.09 0.64 2.64 -26.69 -0.07 0.57 16 20 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 21 C -0.15 -0.91 5.42 -26.59 -0.14 -1.05 16 22 C -0.12 -0.64 6.03 -26.55 -0.16 -0.80 16 23 C -0.16 -0.83 6.14 -26.59 -0.16 -0.99 16 24 C 0.06 0.38 6.84 37.20 0.25 0.63 16 25 O -0.38 -3.24 9.94 -35.23 -0.35 -3.59 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 28 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 29 H 0.40 6.89 8.32 -40.82 -0.34 6.55 16 30 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 31 H 0.10 1.27 8.13 -51.93 -0.42 0.84 16 32 H 0.11 1.05 7.82 -51.93 -0.41 0.64 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -33.88 359.21 -7.75 -41.63 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.00 Total: 0.55 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.60 Total: 5.31 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.43 Total: -39.85 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -1.33 Total: -29.67 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.88 -7.75 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732380446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.100 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds