Wall clock time and date at job start Fri Apr 10 2020 17:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48496 * 109.47116 * 270.00383 * 3 2 1 5 5 H 1.48510 * 109.46673 * 30.00088 * 3 2 1 6 6 H 1.48498 * 109.47559 * 149.99675 * 3 2 1 7 7 C 1.37880 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99861 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47174 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00271 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 9 14 14 O 1.45199 * 109.46928 * 180.02562 * 13 11 10 15 15 C 1.34230 * 116.99614 * 179.97438 * 14 13 11 16 16 O 1.20824 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.50706 * 119.99717 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47116 * 180.02562 * 17 15 14 19 19 C 1.52994 * 109.47081 * 180.02562 * 18 17 15 20 20 H 1.08999 * 109.48115 * 54.97739 * 19 18 17 21 21 C 1.53092 * 109.48046 * 175.00024 * 19 18 17 22 22 C 1.53180 * 109.16358 * 177.58789 * 21 19 18 23 23 C 1.53176 * 109.03775 * 303.02270 * 22 21 19 24 24 C 1.53089 * 109.16226 * 56.97769 * 23 22 21 25 25 O 1.42895 * 109.41879 * 302.39026 * 24 23 22 26 26 H 0.97002 * 119.99739 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 60.00183 * 9 7 2 28 28 H 1.09001 * 109.47380 * 300.00095 * 9 7 2 29 29 H 0.97005 * 120.00266 * 0.02562 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 31 31 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 32 32 H 1.09000 * 109.47303 * 300.00327 * 17 15 14 33 33 H 1.09003 * 109.46535 * 60.00663 * 17 15 14 34 34 H 1.09000 * 109.47151 * 300.00236 * 18 17 15 35 35 H 1.09003 * 109.46860 * 60.00013 * 18 17 15 36 36 H 1.08996 * 109.52468 * 297.49364 * 21 19 18 37 37 H 1.09000 * 109.52372 * 57.68340 * 21 19 18 38 38 H 1.08999 * 109.54281 * 62.89009 * 22 21 19 39 39 H 1.09002 * 109.54559 * 183.06222 * 22 21 19 40 40 H 1.09000 * 109.51921 * 176.88810 * 23 22 21 41 41 H 1.09008 * 109.51723 * 297.07194 * 23 22 21 42 42 H 1.08997 * 109.47941 * 62.37960 * 24 23 22 43 43 H 1.09002 * 109.47378 * 182.40739 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 5.3248 -2.8218 -0.0009 12 8 6.1129 -1.9000 -0.0014 13 6 5.8270 -4.2426 -0.0014 14 8 7.2790 -4.2427 -0.0018 15 6 7.8883 -5.4387 -0.0017 16 8 7.2302 -6.4520 -0.0018 17 6 9.3933 -5.5177 -0.0027 18 6 9.8271 -6.9849 -0.0031 19 6 11.3549 -7.0651 -0.0035 20 1 11.7490 -6.4953 0.8380 21 6 11.7895 -8.5276 0.1220 22 6 13.3180 -8.6051 0.0603 23 6 13.7983 -7.9659 -1.2463 24 6 13.2861 -6.5251 -1.3189 25 8 11.8603 -6.5225 -1.2251 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6798 0.8895 28 1 3.8745 -0.6810 -0.8905 29 1 3.3693 -3.3127 0.0001 30 1 5.4631 -4.7564 -0.8912 31 1 5.4642 -4.7565 0.8888 32 1 9.7825 -5.0239 -0.8932 33 1 9.7836 -5.0233 0.8869 34 1 9.4379 -7.4791 0.8872 35 1 9.4367 -7.4790 -0.8928 36 1 11.4425 -8.9304 1.0736 37 1 11.3621 -9.1062 -0.6970 38 1 13.7449 -8.0681 0.9073 39 1 13.6320 -9.6483 0.0944 40 1 14.8880 -7.9671 -1.2733 41 1 13.4115 -8.5332 -2.0930 42 1 13.7058 -5.9482 -0.4947 43 1 13.5890 -6.0790 -2.2662 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732380446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:27 Heat of formation + Delta-G solvation = -214.019117 kcal Electronic energy + Delta-G solvation = -23382.547163 eV Core-core repulsion = 19619.198534 eV Total energy + Delta-G solvation = -3763.348629 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76272 -40.53818 -40.23398 -37.66018 -36.21126 -35.06332 -34.51715 -34.46954 -31.61143 -30.86251 -28.89224 -26.85426 -24.92477 -24.13145 -22.98051 -21.74627 -21.56155 -21.09691 -19.36587 -18.83455 -18.10229 -18.04114 -17.33944 -17.20471 -16.86827 -16.58046 -16.34669 -15.83914 -15.57816 -15.32373 -15.03630 -14.80606 -14.62718 -14.36233 -14.23022 -13.81409 -13.61920 -13.55776 -13.09936 -13.00921 -12.88348 -12.71200 -12.22179 -12.09029 -11.93721 -11.91924 -11.83086 -11.70972 -11.66643 -11.53839 -11.16906 -10.97246 -10.92784 -10.32932 -10.05205 -8.40481 -6.48247 1.11223 1.26975 1.33838 1.37072 1.47900 1.50915 2.28043 2.49134 2.86207 2.94842 3.57925 3.67252 3.68775 3.93068 3.98061 4.02920 4.04130 4.08059 4.11576 4.30376 4.35128 4.42171 4.57756 4.65042 4.74236 4.76532 4.88294 4.94781 4.95810 4.99683 5.10490 5.13829 5.18433 5.21768 5.24225 5.33800 5.39656 5.42761 6.05111 6.35067 6.51136 6.60059 6.72487 7.10837 7.26369 8.74049 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.044533 B = 0.002009 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.597167 B =13934.855668 C =14398.095079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.697 5.697 11 C 0.504 3.496 12 O -0.578 6.578 13 C 0.057 3.943 14 O -0.349 6.349 15 C 0.463 3.537 16 O -0.532 6.532 17 C -0.104 4.104 18 C -0.095 4.095 19 C 0.091 3.909 20 H 0.074 0.926 21 C -0.151 4.151 22 C -0.123 4.123 23 C -0.156 4.156 24 C 0.054 3.946 25 O -0.401 6.401 26 H 0.273 0.727 27 H 0.018 0.982 28 H 0.016 0.984 29 H 0.413 0.587 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.579 -18.160 0.659 33.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.290 3.710 12 O -0.458 6.458 13 C -0.020 4.020 14 O -0.265 6.265 15 C 0.308 3.692 16 O -0.421 6.421 17 C -0.142 4.142 18 C -0.133 4.133 19 C 0.033 3.967 20 H 0.092 0.908 21 C -0.188 4.188 22 C -0.160 4.160 23 C -0.194 4.194 24 C -0.022 4.022 25 O -0.321 6.321 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.249 0.751 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 28.608 -17.602 0.515 33.593 hybrid contribution -0.593 0.347 0.023 0.688 sum 28.015 -17.255 0.538 32.907 Atomic orbital electron populations 1.69980 1.07713 1.28673 1.50486 1.25603 0.95554 1.02721 0.93517 0.85851 0.79287 0.79234 0.79497 1.18965 1.19835 1.18298 1.21279 0.89813 0.94736 1.52917 0.92064 1.19178 0.93460 0.80338 0.96168 1.45872 1.05900 1.10362 1.72748 1.20606 0.82693 0.91078 0.76592 1.90675 1.56207 1.47566 1.51399 1.22709 0.78522 0.93754 1.07007 1.86572 1.21670 1.34427 1.83832 1.24543 0.93405 0.80165 0.71118 1.90656 1.67918 1.36739 1.46822 1.21487 0.84453 1.00560 1.07665 1.21443 0.93690 0.93935 1.04229 1.22158 0.92930 0.94238 0.87353 0.90776 1.22196 0.96955 0.96374 1.03304 1.21610 0.94808 1.01846 0.97782 1.22192 1.01974 0.96783 0.98442 1.22721 0.80218 0.96398 1.02878 1.87923 1.21940 1.82995 1.39205 0.91801 0.96422 0.96610 0.75095 0.86152 0.85919 0.86493 0.85507 0.88894 0.91474 0.89673 0.91859 0.91037 0.90775 0.89530 0.91938 0.92264 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 2 C 0.03 1.49 5.47 84.66 0.46 1.95 16 3 Si 0.94 43.61 27.47 68.60 1.88 45.49 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.26 -11.88 6.54 99.48 0.65 -11.23 16 7 C -0.55 -30.01 9.83 25.60 0.25 -29.76 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 9 C 0.23 11.22 4.50 85.63 0.38 11.60 16 10 N -0.70 -27.34 5.55 -466.79 -2.59 -29.93 16 11 C 0.50 18.90 7.91 87.66 0.69 19.59 16 12 O -0.58 -26.63 16.50 15.78 0.26 -26.37 16 13 C 0.06 1.58 5.94 71.24 0.42 2.00 16 14 O -0.35 -10.16 9.76 -45.07 -0.44 -10.60 16 15 C 0.46 11.23 7.96 71.24 0.57 11.80 16 16 O -0.53 -14.75 15.73 21.97 0.35 -14.41 16 17 C -0.10 -1.75 5.71 29.85 0.17 -1.58 16 18 C -0.10 -1.43 4.21 30.59 0.13 -1.30 16 19 C 0.09 1.14 2.64 30.62 0.08 1.23 16 20 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 21 C -0.15 -1.60 5.42 30.69 0.17 -1.43 16 22 C -0.12 -1.04 6.03 30.71 0.19 -0.86 16 23 C -0.16 -1.41 6.14 30.68 0.19 -1.22 16 24 C 0.05 0.59 6.84 72.01 0.49 1.09 16 25 O -0.40 -6.42 9.94 -148.98 -1.48 -7.90 16 26 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 27 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 28 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 29 H 0.41 13.84 8.32 -92.70 -0.77 13.07 16 30 H 0.12 2.86 8.13 -2.39 -0.02 2.84 16 31 H 0.12 2.85 8.13 -2.39 -0.02 2.83 16 32 H 0.12 1.97 7.82 -2.39 -0.02 1.95 16 33 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.28 8.10 -2.39 -0.02 1.26 16 35 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -72.09 359.21 2.65 -69.45 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.17 Total: 16.05 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 4.20 Total: 13.12 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.29 Total: -84.82 kcal Atomic # 8 Polarization: -57.97 SS G_CDS: -1.32 Total: -59.28 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -72.09 2.65 -69.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732380446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.574 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds