Wall clock time and date at job start Fri Apr 10 2020 17:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46990 * 2 1 4 4 S 1.65598 * 119.99805 * 164.99776 * 3 2 1 5 5 O 1.42095 * 106.40471 * 317.92140 * 4 3 2 6 6 O 1.42094 * 106.40368 * 184.99817 * 4 3 2 7 7 N 1.65606 * 107.21948 * 71.45976 * 4 3 2 8 8 C 1.46503 * 120.00116 * 270.00063 * 7 4 3 9 9 C 1.50701 * 109.46930 * 264.99818 * 8 7 4 10 10 H 1.08001 * 119.99813 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99808 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99949 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47265 * 60.00667 * 13 11 9 15 15 H 1.48503 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47536 * 300.00357 * 13 11 9 17 17 C 1.46503 * 120.00136 * 89.99556 * 7 4 3 18 18 C 1.50695 * 109.47313 * 265.00465 * 17 7 4 19 19 C 1.38678 * 120.41675 * 270.25293 * 18 17 7 20 20 C 1.38627 * 118.41930 * 180.24221 * 19 18 17 21 21 C 1.38232 * 119.16085 * 359.75178 * 20 19 18 22 22 N 1.31857 * 120.76541 * 359.97438 * 21 20 19 23 23 C 1.31889 * 121.72235 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46988 * 60.00313 * 1 2 3 25 25 H 1.09003 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47010 * 300.00184 * 1 2 3 27 27 H 1.09000 * 109.47488 * 239.99585 * 2 1 3 28 28 H 1.09006 * 109.47338 * 119.99684 * 2 1 3 29 29 H 0.96992 * 120.00316 * 344.99378 * 3 2 1 30 30 H 1.09008 * 109.46620 * 24.99572 * 8 7 4 31 31 H 1.08997 * 109.47488 * 144.99479 * 8 7 4 32 32 H 0.97001 * 119.99938 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.46632 * 145.00274 * 17 7 4 34 34 H 1.08996 * 109.46728 * 25.00268 * 17 7 4 35 35 H 1.07994 * 120.78944 * 359.96926 * 19 18 17 36 36 H 1.07997 * 120.42083 * 179.72800 * 20 19 18 37 37 H 1.07999 * 119.61954 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.61237 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.9294 0.8673 1.4745 6 8 3.7284 3.1150 0.4002 7 7 4.5186 1.1735 -0.9024 8 6 5.0267 -0.2005 -0.9204 9 6 6.4279 -0.2251 -0.3661 10 1 6.8931 0.6910 -0.0333 11 6 7.1154 -1.4173 -0.2829 12 7 6.5486 -2.5329 -0.6878 13 14 8.8524 -1.4478 0.4034 14 1 8.8420 -0.9416 1.7995 15 1 9.3676 -2.8405 0.3853 16 1 9.7290 -0.5855 -0.4292 17 6 4.8226 2.0815 -2.0111 18 6 3.8189 1.8782 -3.1166 19 6 4.0551 0.9473 -4.1170 20 6 3.1062 0.7978 -5.1165 21 6 1.9619 1.5725 -5.0803 22 7 1.7681 2.4443 -4.1102 23 6 2.6490 2.6131 -3.1432 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.4151 2.1090 -0.2175 30 1 4.3831 -0.8338 -0.3097 31 1 5.0348 -0.5715 -1.9452 32 1 7.0325 -3.3716 -0.6296 33 1 5.8243 1.8732 -2.3870 34 1 4.7731 3.1123 -1.6605 35 1 4.9587 0.3560 -4.1197 36 1 3.2592 0.0854 -5.9137 37 1 1.2177 1.4618 -5.8550 38 1 2.4557 3.3372 -2.3657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736324053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:38 Heat of formation + Delta-G solvation = -45.229000 kcal Electronic energy + Delta-G solvation = -23265.000036 eV Core-core repulsion = 19848.183224 eV Total energy + Delta-G solvation = -3416.816813 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.01123 -36.70994 -36.04270 -35.52939 -35.18079 -32.92058 -32.06743 -31.18626 -29.50101 -27.53034 -25.39092 -23.46827 -22.75382 -22.48263 -21.62219 -18.93512 -17.44281 -17.07453 -16.71581 -16.29397 -16.17905 -15.79329 -15.11676 -14.93852 -14.58337 -14.29592 -13.87223 -13.49363 -13.29258 -12.90694 -12.86210 -12.48195 -12.29946 -11.86958 -11.71501 -11.65066 -11.59973 -11.36836 -11.21942 -11.14910 -11.10964 -10.72284 -10.57231 -10.08608 -9.92549 -9.62466 -9.35953 -9.23655 -8.88817 -8.48139 -8.18350 -6.11200 -4.15249 1.10033 1.29651 1.46585 3.30625 3.34673 3.39187 3.50073 3.97952 4.13575 4.40971 4.53492 4.93685 4.95209 5.00969 5.16180 5.16852 5.20631 5.23887 5.25836 5.43560 5.47957 5.71390 5.81389 5.83879 6.00502 6.06114 6.13011 6.21127 6.29269 6.35750 6.58670 6.82478 7.07975 7.24123 7.35047 7.53846 7.86111 8.05725 8.14684 8.86934 9.50315 10.97204 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.006622 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.020900 B = 4227.414166 C = 5158.526684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.117 3.883 3 N -1.133 6.133 4 S 2.779 3.221 5 O -0.962 6.962 6 O -0.998 6.998 7 N -0.986 5.986 8 C 0.258 3.742 9 C -0.530 4.530 10 H 0.060 0.940 11 C 0.064 3.936 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.163 3.837 18 C -0.146 4.146 19 C -0.052 4.052 20 C -0.174 4.174 21 C 0.089 3.911 22 N -0.487 5.487 23 C 0.101 3.899 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.407 0.593 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.157 5.571 -6.869 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.009 4.009 3 N -0.893 5.893 4 S 2.787 3.213 5 O -0.945 6.945 6 O -0.982 6.982 7 N -0.826 5.826 8 C 0.136 3.864 9 C -0.570 4.570 10 H 0.079 0.921 11 C -0.139 4.139 12 N -0.534 5.534 13 Si 0.724 3.276 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.202 1.202 17 C 0.035 3.965 18 C -0.150 4.150 19 C -0.078 4.078 20 C -0.194 4.194 21 C -0.069 4.069 22 N -0.195 5.195 23 C -0.057 4.057 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.240 0.760 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.431 6.079 -5.998 13.481 hybrid contribution 1.328 -0.695 -0.200 1.512 sum -9.103 5.384 -6.198 12.259 Atomic orbital electron populations 1.21937 0.94779 1.02500 1.02191 1.21149 0.95461 0.81886 1.02426 1.56195 1.30403 1.14096 1.88576 1.02024 0.72476 0.72698 0.74126 1.93627 1.82409 1.69060 1.49423 1.93532 1.86217 1.31024 1.87452 1.57839 1.65648 1.23395 1.35756 1.19059 0.94600 0.74523 0.98169 1.21443 0.99318 0.94079 1.42112 0.92128 1.24909 0.98451 0.95331 0.95163 1.69903 1.37761 0.98551 1.47179 0.86589 0.84126 0.76986 0.79945 1.19982 1.21208 1.20192 1.20061 0.97439 0.94057 0.84898 1.21565 0.98040 0.97432 0.97964 1.21667 0.99235 0.94815 0.92099 1.22149 0.95715 1.01335 1.00187 1.22676 0.96040 0.92017 0.96126 1.67656 1.31115 1.18272 1.02507 1.22653 0.89539 0.97516 0.95977 0.92297 0.91373 0.92170 0.91981 0.90232 0.76042 0.94461 0.94751 0.92630 0.88395 0.89082 0.84217 0.85038 0.83273 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.05 37.16 0.37 -1.30 16 2 C 0.12 1.66 6.93 -4.04 -0.03 1.63 16 3 N -1.13 -16.80 6.06 -10.61 -0.06 -16.87 16 4 S 2.78 53.56 6.17 -107.50 -0.66 52.90 16 5 O -0.96 -22.67 16.37 -57.18 -0.94 -23.60 16 6 O -1.00 -19.86 16.69 -57.18 -0.95 -20.81 16 7 N -0.99 -19.25 2.81 -116.94 -0.33 -19.58 16 8 C 0.26 6.07 5.10 -5.19 -0.03 6.04 16 9 C -0.53 -14.21 9.38 -34.44 -0.32 -14.54 16 10 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -25.15 13.29 55.43 0.74 -24.41 16 13 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.16 2.67 5.83 -5.19 -0.03 2.64 16 18 C -0.15 -2.15 5.48 -104.48 -0.57 -2.72 16 19 C -0.05 -0.72 9.54 -39.28 -0.37 -1.09 16 20 C -0.17 -2.08 10.11 -39.44 -0.40 -2.48 16 21 C 0.09 1.07 11.18 -17.54 -0.20 0.87 16 22 N -0.49 -6.81 10.36 -13.25 -0.14 -6.94 16 23 C 0.10 1.42 10.86 -17.55 -0.19 1.23 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.08 1.24 7.62 -51.93 -0.40 0.84 16 29 H 0.41 5.04 8.65 -34.46 -0.30 4.75 16 30 H 0.04 0.95 7.61 -51.92 -0.40 0.55 16 31 H 0.03 0.81 7.66 -51.93 -0.40 0.41 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.10 1.60 8.06 -51.93 -0.42 1.19 16 34 H 0.09 1.40 6.87 -51.93 -0.36 1.04 16 35 H 0.14 1.96 7.93 -52.49 -0.42 1.55 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -32.54 339.81 -9.29 -41.84 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.18 Total: 4.17 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.86 Total: -8.06 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: 0.21 Total: -67.80 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -1.89 Total: -44.41 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 53.56 SS G_CDS: -0.66 Total: 52.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.54 -9.29 -41.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736324053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.391 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds