Wall clock time and date at job start Fri Apr 10 2020 17:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46990 * 2 1 4 4 S 1.65598 * 119.99805 * 164.99776 * 3 2 1 5 5 O 1.42095 * 106.40471 * 317.92140 * 4 3 2 6 6 O 1.42094 * 106.40368 * 184.99817 * 4 3 2 7 7 N 1.65606 * 107.21948 * 71.45976 * 4 3 2 8 8 C 1.46503 * 120.00116 * 270.00063 * 7 4 3 9 9 C 1.50701 * 109.46930 * 264.99818 * 8 7 4 10 10 H 1.08001 * 119.99813 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99911 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99808 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99949 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47265 * 60.00667 * 13 11 9 15 15 H 1.48503 * 109.47322 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47536 * 300.00357 * 13 11 9 17 17 C 1.46503 * 120.00136 * 89.99556 * 7 4 3 18 18 C 1.50695 * 109.47313 * 265.00465 * 17 7 4 19 19 C 1.38678 * 120.41675 * 270.25293 * 18 17 7 20 20 C 1.38627 * 118.41930 * 180.24221 * 19 18 17 21 21 C 1.38232 * 119.16085 * 359.75178 * 20 19 18 22 22 N 1.31857 * 120.76541 * 359.97438 * 21 20 19 23 23 C 1.31889 * 121.72235 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.46988 * 60.00313 * 1 2 3 25 25 H 1.09003 * 109.46957 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47010 * 300.00184 * 1 2 3 27 27 H 1.09000 * 109.47488 * 239.99585 * 2 1 3 28 28 H 1.09006 * 109.47338 * 119.99684 * 2 1 3 29 29 H 0.96992 * 120.00316 * 344.99378 * 3 2 1 30 30 H 1.09008 * 109.46620 * 24.99572 * 8 7 4 31 31 H 1.08997 * 109.47488 * 144.99479 * 8 7 4 32 32 H 0.97001 * 119.99938 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.46632 * 145.00274 * 17 7 4 34 34 H 1.08996 * 109.46728 * 25.00268 * 17 7 4 35 35 H 1.07994 * 120.78944 * 359.96926 * 19 18 17 36 36 H 1.07997 * 120.42083 * 179.72800 * 20 19 18 37 37 H 1.07999 * 119.61954 * 180.02562 * 21 20 19 38 38 H 1.08002 * 119.61237 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.9294 0.8673 1.4745 6 8 3.7284 3.1150 0.4002 7 7 4.5186 1.1735 -0.9024 8 6 5.0267 -0.2005 -0.9204 9 6 6.4279 -0.2251 -0.3661 10 1 6.8931 0.6910 -0.0333 11 6 7.1154 -1.4173 -0.2829 12 7 6.5486 -2.5329 -0.6878 13 14 8.8524 -1.4478 0.4034 14 1 8.8420 -0.9416 1.7995 15 1 9.3676 -2.8405 0.3853 16 1 9.7290 -0.5855 -0.4292 17 6 4.8226 2.0815 -2.0111 18 6 3.8189 1.8782 -3.1166 19 6 4.0551 0.9473 -4.1170 20 6 3.1062 0.7978 -5.1165 21 6 1.9619 1.5725 -5.0803 22 7 1.7681 2.4443 -4.1102 23 6 2.6490 2.6131 -3.1432 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.4151 2.1090 -0.2175 30 1 4.3831 -0.8338 -0.3097 31 1 5.0348 -0.5715 -1.9452 32 1 7.0325 -3.3716 -0.6296 33 1 5.8243 1.8732 -2.3870 34 1 4.7731 3.1123 -1.6605 35 1 4.9587 0.3560 -4.1197 36 1 3.2592 0.0854 -5.9137 37 1 1.2177 1.4618 -5.8550 38 1 2.4557 3.3372 -2.3657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736324053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:36 Heat of formation + Delta-G solvation = -68.930309 kcal Electronic energy + Delta-G solvation = -23266.027802 eV Core-core repulsion = 19848.183224 eV Total energy + Delta-G solvation = -3417.844579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.06534 -38.34555 -37.56644 -36.89301 -36.73623 -34.77950 -33.27633 -32.42717 -30.59881 -29.25737 -26.89919 -24.69174 -24.18335 -23.75314 -22.85971 -20.41788 -19.08040 -18.51431 -18.18095 -17.85737 -17.56616 -17.00240 -16.66323 -16.15246 -15.99730 -15.66878 -15.29689 -14.72384 -14.55020 -14.26315 -14.13088 -13.97751 -13.84161 -13.37013 -13.17734 -13.10297 -12.95333 -12.88163 -12.76329 -12.57347 -12.50677 -12.40152 -12.28122 -11.91600 -11.79349 -10.69838 -10.60131 -10.52094 -10.44339 -9.96277 -9.79441 -8.18898 -6.29581 -0.36484 0.20144 0.39355 1.40329 1.43469 1.50135 2.04526 2.41296 2.62273 2.94492 3.12827 3.40041 3.56639 3.84118 3.87953 4.07182 4.11813 4.14282 4.21800 4.30178 4.44988 4.57632 4.68412 4.78243 4.80267 4.95341 5.05609 5.11686 5.17754 5.28272 5.30274 5.36447 5.52878 5.68250 5.81204 5.85368 6.12294 6.18467 6.78058 7.03828 7.38968 8.88238 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.006622 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.020900 B = 4227.414166 C = 5158.526684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.112 3.888 3 N -1.114 6.114 4 S 2.791 3.209 5 O -1.009 7.009 6 O -1.006 7.006 7 N -0.989 5.989 8 C 0.277 3.723 9 C -0.548 4.548 10 H 0.053 0.947 11 C 0.017 3.983 12 N -0.921 5.921 13 Si 0.951 3.049 14 H -0.280 1.280 15 H -0.278 1.278 16 H -0.264 1.264 17 C 0.161 3.839 18 C -0.157 4.157 19 C -0.065 4.065 20 C -0.167 4.167 21 C 0.092 3.908 22 N -0.500 5.500 23 C 0.097 3.903 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.422 0.578 30 H 0.014 0.986 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.248 5.915 -8.219 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 N -0.878 5.878 4 S 2.800 3.200 5 O -0.992 6.992 6 O -0.990 6.990 7 N -0.828 5.828 8 C 0.154 3.846 9 C -0.588 4.588 10 H 0.071 0.929 11 C -0.183 4.183 12 N -0.560 5.560 13 Si 0.776 3.224 14 H -0.206 1.206 15 H -0.203 1.203 16 H -0.189 1.189 17 C 0.035 3.965 18 C -0.161 4.161 19 C -0.092 4.092 20 C -0.187 4.187 21 C -0.065 4.065 22 N -0.208 5.208 23 C -0.060 4.060 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.258 0.742 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.178 0.822 37 H 0.201 0.799 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.524 6.462 -7.364 15.126 hybrid contribution 1.589 -0.783 0.148 1.777 sum -9.935 5.679 -7.217 13.529 Atomic orbital electron populations 1.21900 0.91551 1.03860 1.03196 1.21270 0.98074 0.80862 1.01215 1.55738 1.28844 1.15140 1.88087 1.01406 0.73243 0.71927 0.73474 1.93567 1.83649 1.70182 1.51800 1.93510 1.86748 1.31199 1.87516 1.57674 1.66181 1.22243 1.36737 1.18583 0.92772 0.76209 0.97037 1.21803 1.00915 0.93911 1.42142 0.92903 1.25646 1.01990 0.95134 0.95516 1.69988 1.39079 0.98942 1.48033 0.85725 0.80265 0.77473 0.78947 1.20573 1.20329 1.18865 1.20165 0.97976 0.93705 0.84704 1.21341 0.98150 0.98718 0.97896 1.21757 0.99767 0.94825 0.92870 1.22442 0.94852 1.01384 0.99977 1.23275 0.96540 0.90721 0.96007 1.67719 1.31100 1.19065 1.02952 1.22713 0.89300 0.97582 0.96444 0.91162 0.89853 0.91234 0.92692 0.92127 0.74224 0.96761 0.95028 0.92455 0.88937 0.88175 0.85016 0.82212 0.79880 0.82729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.05 71.98 0.72 -2.12 16 2 C 0.11 3.13 6.93 86.38 0.60 3.73 16 3 N -1.11 -32.44 6.06 -187.47 -1.14 -33.58 16 4 S 2.79 108.95 6.17 -56.49 -0.35 108.61 16 5 O -1.01 -48.98 16.37 -128.00 -2.10 -51.08 16 6 O -1.01 -39.85 16.69 -128.00 -2.14 -41.99 16 7 N -0.99 -39.34 2.81 -523.90 -1.47 -40.81 16 8 C 0.28 13.41 5.10 85.63 0.44 13.85 16 9 C -0.55 -30.03 9.38 25.60 0.24 -29.79 16 10 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 11 C 0.02 0.94 5.46 84.65 0.46 1.40 16 12 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 13 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 C 0.16 5.32 5.83 85.63 0.50 5.82 16 18 C -0.16 -4.54 5.48 -19.77 -0.11 -4.65 16 19 C -0.07 -1.77 9.54 22.47 0.21 -1.56 16 20 C -0.17 -3.57 10.11 22.36 0.23 -3.35 16 21 C 0.09 1.92 11.18 84.69 0.95 2.87 16 22 N -0.50 -12.79 10.36 -195.83 -2.03 -14.82 16 23 C 0.10 2.59 10.86 84.67 0.92 3.51 16 24 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.94 7.62 -2.38 -0.02 1.92 16 29 H 0.42 9.83 8.65 -96.76 -0.84 8.99 16 30 H 0.01 0.76 7.61 -2.38 -0.02 0.74 16 31 H 0.03 1.53 7.66 -2.39 -0.02 1.52 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.09 3.11 8.06 -2.39 -0.02 3.09 16 34 H 0.10 3.08 6.87 -2.39 -0.02 3.07 16 35 H 0.13 3.72 7.93 -2.91 -0.02 3.70 16 36 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 37 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -69.88 339.81 -1.52 -71.39 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.23 Total: 18.83 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 5.16 Total: -10.28 kcal Atomic # 7 Polarization: -136.93 SS G_CDS: -4.35 Total: -141.28 kcal Atomic # 8 Polarization: -88.83 SS G_CDS: -4.23 Total: -93.06 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 108.95 SS G_CDS: -0.35 Total: 108.61 kcal Total: -69.88 -1.52 -71.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736324053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.463 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds