Wall clock time and date at job start Fri Apr 10 2020 17:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47160 * 2 1 4 4 O 1.45205 * 109.46538 * 240.00490 * 2 1 3 5 5 C 1.34229 * 117.00182 * 90.00146 * 4 2 1 6 6 O 1.20824 * 119.99624 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00145 * 179.97438 * 5 4 2 8 8 H 1.09002 * 115.56044 * 325.69876 * 7 5 4 9 9 C 1.53000 * 117.49604 * 111.39055 * 7 5 4 10 10 C 1.52997 * 117.49669 * 180.02562 * 7 5 4 11 11 H 1.08997 * 117.50044 * 359.97438 * 10 7 5 12 12 C 1.50698 * 117.51636 * 145.03316 * 10 7 5 13 13 O 1.20826 * 120.00222 * 0.02562 * 12 10 7 14 14 O 1.34234 * 120.00038 * 180.02562 * 12 10 7 15 15 C 1.50693 * 109.47560 * 120.00649 * 2 1 3 16 16 O 1.21277 * 120.00449 * 119.99300 * 15 2 1 17 17 N 1.34779 * 119.99699 * 299.99835 * 15 2 1 18 18 C 1.46497 * 119.99972 * 359.97438 * 17 15 2 19 19 C 1.46504 * 119.99808 * 179.97438 * 17 15 2 20 20 C 1.50696 * 109.47256 * 90.00155 * 19 17 15 21 21 H 1.08004 * 119.99968 * 359.97438 * 20 19 17 22 22 C 1.37870 * 120.00279 * 180.02562 * 20 19 17 23 23 N 1.31517 * 120.00212 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00126 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47352 * 89.99764 * 24 22 20 26 26 H 1.48506 * 109.47423 * 209.99889 * 24 22 20 27 27 H 1.48503 * 109.47332 * 329.99789 * 24 22 20 28 28 H 1.09002 * 109.47429 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46928 * 299.99686 * 1 2 3 30 30 H 1.09000 * 109.47593 * 59.99623 * 1 2 3 31 31 H 1.08990 * 117.49990 * 359.97438 * 9 7 5 32 32 H 1.09004 * 117.49237 * 214.97804 * 9 7 5 33 33 H 0.96699 * 117.00030 * 179.97438 * 14 12 10 34 34 H 1.09009 * 109.46974 * 90.00273 * 18 17 15 35 35 H 1.09000 * 109.47223 * 209.99766 * 18 17 15 36 36 H 1.08994 * 109.47244 * 330.00331 * 18 17 15 37 37 H 1.09004 * 109.46699 * 209.99610 * 19 17 15 38 38 H 1.08996 * 109.47442 * 329.99498 * 19 17 15 39 39 H 0.96991 * 120.00539 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0139 -0.6844 -1.1857 5 6 2.2170 0.0641 -2.2812 6 8 1.9973 1.2518 -2.2505 7 6 2.7190 -0.5769 -3.5494 8 1 3.4124 -1.4069 -3.4142 9 6 1.7543 -0.6479 -4.7348 10 6 2.9310 0.3300 -4.7632 11 1 2.7070 1.3901 -4.6448 12 6 4.0819 0.0072 -5.6810 13 8 4.7959 -0.9386 -5.4450 14 8 4.3139 0.7704 -6.7606 15 6 2.0324 -0.7105 1.2303 16 8 2.7296 -1.6966 1.1190 17 7 1.7069 -0.2501 2.4545 18 6 0.8651 0.9413 2.5890 19 6 2.1948 -0.9412 3.6506 20 6 3.5225 -0.3583 4.0610 21 1 3.9594 0.4462 3.4879 22 6 4.1800 -0.8526 5.1674 23 7 3.6483 -1.8326 5.8650 24 14 5.8254 -0.1296 5.6765 25 1 5.6013 0.9947 6.6204 26 1 6.6427 -1.1772 6.3397 27 1 6.5405 0.3687 4.4741 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 0.7565 -0.2315 -4.5973 32 1 1.8131 -1.5249 -5.3795 33 1 5.0639 0.5243 -7.3192 34 1 -0.1831 0.6437 2.6222 35 1 1.1229 1.4664 3.5087 36 1 1.0289 1.6001 1.7362 37 1 1.4768 -0.8155 4.4610 38 1 2.3155 -2.0024 3.4333 39 1 4.1107 -2.1801 6.6436 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736689084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:40 Heat of formation + Delta-G solvation = -199.228921 kcal Electronic energy + Delta-G solvation = -24085.520382 eV Core-core repulsion = 20186.980009 eV Total energy + Delta-G solvation = -3898.540373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 299.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22582 -41.43175 -40.58904 -38.39281 -37.38062 -36.80634 -36.71876 -34.94382 -33.04282 -29.61140 -27.88171 -27.52922 -26.06512 -25.54125 -23.98456 -22.23293 -21.18374 -20.48189 -19.77019 -18.92659 -18.70645 -18.12830 -17.92659 -17.34962 -17.13880 -16.92508 -16.66334 -16.42745 -15.89931 -15.19006 -14.93400 -14.73460 -14.40601 -14.21915 -13.79497 -13.73141 -13.51941 -13.40639 -13.31037 -13.01749 -12.83951 -12.68413 -12.60900 -12.43356 -12.23242 -12.09888 -12.04299 -11.94315 -11.83478 -11.73887 -11.58365 -10.66397 -10.64819 -9.53678 -8.25743 -6.40383 0.69486 0.99011 1.13892 1.34824 1.38091 1.47858 1.59841 1.92835 2.31495 2.42609 2.50502 3.04293 3.20025 3.35602 3.42736 3.58886 3.76339 3.83844 4.01078 4.24378 4.31743 4.51383 4.56201 4.63776 4.67909 4.72950 4.83555 4.87968 4.93876 5.11274 5.17188 5.23788 5.49253 5.51069 5.76244 6.01474 6.44844 6.60308 6.68497 6.90678 7.18512 7.33896 8.81634 Molecular weight = 299.13amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.003190 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.900402 B = 8774.601324 C = 9675.136009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.117 0.883 4 O -0.339 6.339 5 C 0.496 3.504 6 O -0.518 6.518 7 C -0.157 4.157 8 H 0.142 0.858 9 C -0.077 4.077 10 C -0.136 4.136 11 H 0.160 0.840 12 C 0.519 3.481 13 O -0.546 6.546 14 O -0.500 6.500 15 C 0.497 3.503 16 O -0.581 6.581 17 N -0.599 5.599 18 C 0.067 3.933 19 C 0.259 3.741 20 C -0.548 4.548 21 H 0.051 0.949 22 C 0.010 3.990 23 N -0.926 5.926 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.277 1.277 28 H 0.068 0.932 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.434 0.566 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.000 1.000 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 8.419 -23.155 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 H 0.134 0.866 4 O -0.254 6.254 5 C 0.341 3.659 6 O -0.408 6.408 7 C -0.176 4.176 8 H 0.159 0.841 9 C -0.113 4.113 10 C -0.154 4.154 11 H 0.177 0.823 12 C 0.362 3.638 13 O -0.437 6.437 14 O -0.314 6.314 15 C 0.284 3.716 16 O -0.461 6.461 17 N -0.331 5.331 18 C -0.075 4.075 19 C 0.139 3.861 20 C -0.586 4.586 21 H 0.069 0.931 22 C -0.189 4.189 23 N -0.565 5.565 24 Si 0.791 3.209 25 H -0.185 1.185 26 H -0.205 1.205 27 H -0.202 1.202 28 H 0.087 0.913 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.296 0.704 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.508 8.018 -22.688 25.523 hybrid contribution 1.819 -0.148 0.538 1.903 sum -6.689 7.870 -22.150 24.440 Atomic orbital electron populations 1.22421 0.88724 1.04694 1.06452 1.22596 0.98199 0.96603 0.80541 0.86569 1.86598 1.76724 1.42182 1.19937 1.22780 0.73410 0.85037 0.84717 1.90633 1.49165 1.16539 1.84431 1.21708 1.07479 1.03355 0.85076 0.84067 1.23462 0.94460 0.99768 0.93634 1.21777 0.96977 1.01717 0.94976 0.82272 1.22126 0.83420 0.78534 0.79677 1.90776 1.48847 1.30691 1.73347 1.84443 1.54366 1.56084 1.36535 1.20712 0.80685 0.84875 0.85298 1.90673 1.39664 1.28881 1.86907 1.48043 1.50135 1.29569 1.05342 1.22267 0.94789 0.86214 1.04185 1.18853 0.93976 0.91782 0.81532 1.21695 1.06045 1.19298 1.11607 0.93051 1.25826 1.01738 0.95182 0.96192 1.70032 1.40714 1.26985 1.18789 0.85429 0.78726 0.78445 0.78288 1.18515 1.20499 1.20167 0.91255 0.86916 0.88855 0.83869 0.84217 0.70370 0.89399 0.90701 0.89212 0.94670 0.98147 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.18 71.98 0.66 -3.00 16 2 C 0.08 2.50 2.18 29.85 0.06 2.57 16 3 H 0.12 3.46 6.41 -2.39 -0.02 3.45 16 4 O -0.34 -11.25 9.41 -45.05 -0.42 -11.68 16 5 C 0.50 13.43 7.71 71.24 0.55 13.98 16 6 O -0.52 -14.59 15.48 21.97 0.34 -14.25 16 7 C -0.16 -3.25 5.81 -11.54 -0.07 -3.31 16 8 H 0.14 3.31 7.67 -2.39 -0.02 3.29 16 9 C -0.08 -0.87 9.94 30.60 0.30 -0.56 16 10 C -0.14 -2.14 5.81 -11.53 -0.07 -2.20 16 11 H 0.16 2.32 7.67 -2.39 -0.02 2.30 16 12 C 0.52 8.97 8.11 71.24 0.58 9.55 16 13 O -0.55 -13.50 17.02 21.96 0.37 -13.13 16 14 O -0.50 -5.56 13.42 -51.46 -0.69 -6.25 16 15 C 0.50 21.76 7.15 87.65 0.63 22.38 16 16 O -0.58 -32.10 16.08 15.78 0.25 -31.84 16 17 N -0.60 -25.41 2.86 -851.14 -2.43 -27.84 16 18 C 0.07 1.89 8.80 127.77 1.12 3.02 16 19 C 0.26 13.99 5.16 85.63 0.44 14.43 16 20 C -0.55 -31.91 9.39 25.60 0.24 -31.67 16 21 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 22 C 0.01 0.58 5.46 84.65 0.46 1.04 16 23 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 24 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 25 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.11 2.03 4.53 -2.39 -0.01 2.02 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.14 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.43 1.13 9.10 -74.06 -0.67 0.46 16 34 H 0.09 1.89 6.95 -2.38 -0.02 1.88 16 35 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 36 H 0.09 2.00 6.01 -2.39 -0.01 1.99 16 37 H 0.04 1.88 8.07 -2.38 -0.02 1.86 16 38 H 0.00 0.02 7.42 -2.39 -0.02 0.01 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -85.12 343.74 5.08 -80.04 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.43 Total: 7.05 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 4.92 Total: 26.22 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -2.15 Total: -83.59 kcal Atomic # 8 Polarization: -77.00 SS G_CDS: -0.15 Total: -77.14 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -85.12 5.08 -80.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736689084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.187 kcal (2) G-P(sol) polarization free energy of solvation -85.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds