Wall clock time and date at job start Fri Apr 10 2020 17:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47241 * 2 1 4 4 N 1.46499 * 109.47032 * 120.00084 * 2 1 3 5 5 C 1.46500 * 120.00056 * 296.44525 * 4 2 1 6 6 C 1.50698 * 109.47141 * 90.00169 * 5 4 2 7 7 H 1.08005 * 120.00008 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00274 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00047 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47012 * 60.00342 * 10 8 6 12 12 H 1.48506 * 109.47088 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47069 * 299.99784 * 10 8 6 14 14 C 1.34779 * 120.00005 * 116.45044 * 4 2 1 15 15 O 1.21278 * 119.99764 * 185.43212 * 14 4 2 16 16 C 1.50699 * 119.99922 * 5.43214 * 14 4 2 17 17 C 1.53002 * 109.47134 * 181.34444 * 16 14 4 18 18 H 1.08997 * 110.54067 * 56.39620 * 17 16 14 19 19 S 1.82373 * 110.60376 * 293.54527 * 17 16 14 20 20 C 1.77245 * 94.48836 * 241.48462 * 19 17 16 21 21 N 1.30288 * 126.27441 * 180.02562 * 20 19 17 22 22 N 1.37050 * 107.44774 * 0.02562 * 20 19 17 23 23 C 1.32213 * 120.28105 * 0.02562 * 22 20 19 24 24 O 1.21249 * 122.87907 * 180.02562 * 23 22 20 25 25 H 1.09006 * 109.46464 * 305.70856 * 1 2 3 26 26 H 1.08999 * 109.47264 * 65.70489 * 1 2 3 27 27 H 1.08997 * 109.46958 * 185.71071 * 1 2 3 28 28 H 1.09004 * 109.46865 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47601 * 173.22584 * 3 2 1 30 30 H 1.09008 * 109.47137 * 293.21892 * 3 2 1 31 31 H 1.08996 * 109.47444 * 53.22158 * 3 2 1 32 32 H 1.09001 * 109.47214 * 330.00522 * 5 4 2 33 33 H 1.08998 * 109.47369 * 210.00071 * 5 4 2 34 34 H 0.96996 * 120.00767 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.47316 * 301.34511 * 16 14 4 36 36 H 1.09000 * 109.47210 * 61.34387 * 16 14 4 37 37 H 0.97002 * 119.99631 * 179.97438 * 21 20 19 38 38 H 0.97006 * 119.86170 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7298 -0.1463 2.5253 6 6 0.4315 -0.7197 3.0320 7 1 -0.1234 -1.4193 2.4244 8 6 -0.0479 -0.3513 4.2710 9 7 0.6275 0.5009 5.0107 10 14 -1.6569 -1.0627 4.8992 11 1 -1.5453 -2.5411 4.9829 12 1 -1.9495 -0.5109 6.2466 13 1 -2.7553 -0.7010 3.9676 14 6 2.7332 -1.8267 1.0738 15 8 3.0531 -2.4513 2.0629 16 6 3.1348 -2.3207 -0.2921 17 6 3.9033 -3.6364 -0.1529 18 1 3.3063 -4.3729 0.3849 19 16 5.4971 -3.3626 0.6901 20 6 6.4758 -3.9112 -0.6821 21 7 7.7767 -3.9665 -0.7278 22 7 5.6133 -4.2664 -1.6861 23 6 4.3070 -4.1614 -1.5110 24 8 3.5019 -4.4625 -2.3662 25 1 -0.3632 0.5999 0.8345 26 1 -0.3634 0.4228 -0.9366 27 1 -0.3633 -1.0225 0.1023 28 1 1.8933 -0.5138 -0.8900 29 1 3.1233 1.4449 0.1212 30 1 1.7792 1.9201 -0.9445 31 1 1.5811 1.9901 0.8231 32 1 1.6482 0.9389 2.4637 33 1 2.5357 -0.4118 3.2095 34 1 0.2901 0.7604 5.8823 35 1 2.2425 -2.4834 -0.8966 36 1 3.7702 -1.5782 -0.7747 37 1 8.2207 -4.2837 -1.5298 38 1 5.9626 -4.5957 -2.5290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742605956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:00 Heat of formation + Delta-G solvation = -41.910783 kcal Electronic energy + Delta-G solvation = -22480.793057 eV Core-core repulsion = 19064.120132 eV Total energy + Delta-G solvation = -3416.672924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.12846 -39.34905 -37.32103 -36.15441 -33.76829 -32.92671 -32.34872 -30.91467 -27.98683 -26.80244 -25.76780 -24.11127 -22.81969 -21.52144 -20.99668 -18.61864 -18.38128 -18.03057 -16.81496 -16.50669 -16.29021 -16.00004 -15.24681 -15.06209 -14.72192 -14.29457 -13.62476 -13.57481 -13.21124 -13.08781 -12.79242 -12.52971 -12.28977 -11.93064 -11.76331 -11.62343 -11.23675 -11.19624 -10.97095 -10.87811 -10.83767 -10.58310 -10.43990 -10.05417 -10.04712 -9.92920 -9.57842 -9.06351 -8.41935 -8.16745 -7.73793 -6.03734 -4.07077 0.83468 1.09453 1.55089 2.29034 2.53365 3.22853 3.31885 3.36882 3.40148 3.51972 3.86621 4.37658 4.45579 4.82570 4.86506 4.99676 5.19299 5.31166 5.38689 5.48184 5.52837 5.60272 5.70406 5.95851 6.12334 6.22481 6.24123 6.34298 6.55860 6.89126 7.04912 7.07963 7.42580 7.49311 7.56315 7.91942 8.23562 8.33020 8.83438 8.99682 9.56982 11.04467 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.004270 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.982377 B = 6555.343347 C = 6919.707573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 C -0.161 4.161 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.520 4.520 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.507 3.493 15 O -0.530 6.530 16 C -0.123 4.123 17 C -0.104 4.104 18 H 0.161 0.839 19 S 0.054 5.946 20 C 0.367 3.633 21 N -0.667 5.667 22 N -0.693 5.693 23 C 0.536 3.464 24 O -0.486 6.486 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.343 0.657 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -4.176 -15.287 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.026 3.974 3 C -0.219 4.219 4 N -0.318 5.318 5 C 0.128 3.872 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.292 3.708 15 O -0.408 6.408 16 C -0.165 4.165 17 C -0.236 4.236 18 H 0.179 0.821 19 S 0.280 5.720 20 C -0.022 4.022 21 N -0.302 5.302 22 N -0.348 5.348 23 C 0.318 3.682 24 O -0.357 6.357 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.163 0.837 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.209 -3.841 -13.092 15.923 hybrid contribution -1.298 -1.317 -2.153 2.838 sum 6.911 -5.158 -15.245 17.515 Atomic orbital electron populations 1.22141 0.94551 1.02957 1.01773 1.21056 0.95274 0.93376 0.87662 1.22155 1.01311 0.96270 1.02214 1.48298 1.50911 1.23508 1.09047 1.19285 0.96988 0.94104 0.76788 1.21371 1.06052 1.26375 1.02043 0.92400 1.24904 0.97474 0.95160 0.96493 1.69911 1.38743 1.33159 1.11623 0.86625 0.83669 0.79564 0.77943 1.20250 1.21285 1.20334 1.19880 0.79605 0.81840 0.89480 1.90705 1.55697 1.55419 1.39014 1.21737 1.01697 0.93598 0.99467 1.24077 1.00078 1.04113 0.95366 0.82139 1.88206 0.94063 1.79144 1.10623 1.25385 0.91346 0.93389 0.92125 1.70102 1.02149 1.25498 1.32403 1.44592 1.07847 1.63459 1.18893 1.19729 0.81883 0.77177 0.89373 1.90843 1.52109 1.47136 1.45635 0.90314 0.93184 0.92522 0.90800 0.92612 0.92294 0.91185 0.94580 0.93996 0.92727 0.86793 0.87980 0.83691 0.75257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 8.38 37.16 0.31 -2.09 16 2 C 0.13 1.95 3.16 -67.93 -0.21 1.73 16 3 C -0.16 -2.20 8.93 37.16 0.33 -1.86 16 4 N -0.59 -11.24 2.39 -167.47 -0.40 -11.64 16 5 C 0.25 6.00 4.68 -5.19 -0.02 5.98 16 6 C -0.52 -13.83 8.02 -34.44 -0.28 -14.11 16 7 H 0.06 1.54 7.49 -52.48 -0.39 1.15 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 10 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.51 9.30 7.43 -10.98 -0.08 9.22 16 15 O -0.53 -11.75 14.59 5.56 0.08 -11.67 16 16 C -0.12 -1.59 3.61 -27.88 -0.10 -1.70 16 17 C -0.10 -1.29 2.88 -27.69 -0.08 -1.37 16 18 H 0.16 2.02 8.05 -51.93 -0.42 1.60 16 19 S 0.05 0.72 21.45 -107.50 -2.31 -1.58 16 20 C 0.37 4.03 8.92 -88.69 -0.79 3.24 16 21 N -0.67 -7.32 14.13 30.84 0.44 -6.89 16 22 N -0.69 -6.47 5.22 -12.31 -0.06 -6.53 16 23 C 0.54 6.07 7.52 -11.92 -0.09 5.98 16 24 O -0.49 -6.62 18.01 5.58 0.10 -6.52 16 25 H 0.08 1.43 7.33 -51.93 -0.38 1.05 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.92 8.03 -51.93 -0.42 0.51 16 28 H 0.07 0.89 5.78 -51.93 -0.30 0.59 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.07 1.09 6.87 -51.93 -0.36 0.74 16 32 H 0.04 0.89 6.40 -51.93 -0.33 0.56 16 33 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.11 1.33 7.55 -51.93 -0.39 0.94 16 36 H 0.10 1.12 7.99 -51.93 -0.41 0.71 16 37 H 0.34 2.81 8.92 -40.82 -0.36 2.45 16 38 H 0.41 2.80 8.91 -40.82 -0.36 2.44 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -32.05 332.48 -7.46 -39.52 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.93 Total: 2.40 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -1.11 Total: 6.62 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.71 Total: -50.10 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.31 Total: -1.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.05 -7.46 -39.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742605956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.394 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds