Wall clock time and date at job start Fri Apr 10 2020 17:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47241 * 2 1 4 4 N 1.46499 * 109.47032 * 120.00084 * 2 1 3 5 5 C 1.46500 * 120.00056 * 296.44525 * 4 2 1 6 6 C 1.50698 * 109.47141 * 90.00169 * 5 4 2 7 7 H 1.08005 * 120.00008 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00257 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00274 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00047 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47012 * 60.00342 * 10 8 6 12 12 H 1.48506 * 109.47088 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47069 * 299.99784 * 10 8 6 14 14 C 1.34779 * 120.00005 * 116.45044 * 4 2 1 15 15 O 1.21278 * 119.99764 * 185.43212 * 14 4 2 16 16 C 1.50699 * 119.99922 * 5.43214 * 14 4 2 17 17 C 1.53002 * 109.47134 * 181.34444 * 16 14 4 18 18 H 1.08997 * 110.54067 * 56.39620 * 17 16 14 19 19 S 1.82373 * 110.60376 * 293.54527 * 17 16 14 20 20 C 1.77245 * 94.48836 * 241.48462 * 19 17 16 21 21 N 1.30288 * 126.27441 * 180.02562 * 20 19 17 22 22 N 1.37050 * 107.44774 * 0.02562 * 20 19 17 23 23 C 1.32213 * 120.28105 * 0.02562 * 22 20 19 24 24 O 1.21249 * 122.87907 * 180.02562 * 23 22 20 25 25 H 1.09006 * 109.46464 * 305.70856 * 1 2 3 26 26 H 1.08999 * 109.47264 * 65.70489 * 1 2 3 27 27 H 1.08997 * 109.46958 * 185.71071 * 1 2 3 28 28 H 1.09004 * 109.46865 * 240.00110 * 2 1 3 29 29 H 1.09000 * 109.47601 * 173.22584 * 3 2 1 30 30 H 1.09008 * 109.47137 * 293.21892 * 3 2 1 31 31 H 1.08996 * 109.47444 * 53.22158 * 3 2 1 32 32 H 1.09001 * 109.47214 * 330.00522 * 5 4 2 33 33 H 1.08998 * 109.47369 * 210.00071 * 5 4 2 34 34 H 0.96996 * 120.00767 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.47316 * 301.34511 * 16 14 4 36 36 H 1.09000 * 109.47210 * 61.34387 * 16 14 4 37 37 H 0.97002 * 119.99631 * 179.97438 * 21 20 19 38 38 H 0.97006 * 119.86170 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7298 -0.1463 2.5253 6 6 0.4315 -0.7197 3.0320 7 1 -0.1234 -1.4193 2.4244 8 6 -0.0479 -0.3513 4.2710 9 7 0.6275 0.5009 5.0107 10 14 -1.6569 -1.0627 4.8992 11 1 -1.5453 -2.5411 4.9829 12 1 -1.9495 -0.5109 6.2466 13 1 -2.7553 -0.7010 3.9676 14 6 2.7332 -1.8267 1.0738 15 8 3.0531 -2.4513 2.0629 16 6 3.1348 -2.3207 -0.2921 17 6 3.9033 -3.6364 -0.1529 18 1 3.3063 -4.3729 0.3849 19 16 5.4971 -3.3626 0.6901 20 6 6.4758 -3.9112 -0.6821 21 7 7.7767 -3.9665 -0.7278 22 7 5.6133 -4.2664 -1.6861 23 6 4.3070 -4.1614 -1.5110 24 8 3.5019 -4.4625 -2.3662 25 1 -0.3632 0.5999 0.8345 26 1 -0.3634 0.4228 -0.9366 27 1 -0.3633 -1.0225 0.1023 28 1 1.8933 -0.5138 -0.8900 29 1 3.1233 1.4449 0.1212 30 1 1.7792 1.9201 -0.9445 31 1 1.5811 1.9901 0.8231 32 1 1.6482 0.9389 2.4637 33 1 2.5357 -0.4118 3.2095 34 1 0.2901 0.7604 5.8823 35 1 2.2425 -2.4834 -0.8966 36 1 3.7702 -1.5782 -0.7747 37 1 8.2207 -4.2837 -1.5298 38 1 5.9626 -4.5957 -2.5290 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742605956.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:00 Heat of formation + Delta-G solvation = -64.552183 kcal Electronic energy + Delta-G solvation = -22481.774861 eV Core-core repulsion = 19064.120132 eV Total energy + Delta-G solvation = -3417.654729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.06738 -40.78565 -38.24466 -37.59470 -35.04085 -34.61187 -33.45092 -32.38913 -29.69368 -27.98617 -27.14899 -25.02019 -24.62388 -22.76083 -22.05320 -19.77753 -19.30594 -19.24020 -18.53811 -18.05049 -17.40514 -17.04665 -16.73008 -16.45100 -15.98232 -15.72771 -14.94871 -14.82292 -14.54284 -14.16314 -14.06456 -13.85826 -13.77061 -13.31490 -13.17002 -12.95932 -12.79879 -12.68962 -12.47227 -12.25187 -12.14646 -12.05192 -11.82218 -11.62254 -11.47327 -10.99224 -10.79913 -10.57133 -10.53423 -9.38108 -9.19882 -8.14178 -6.24999 -0.12768 0.18583 0.60727 1.39268 1.39807 1.42663 1.49203 1.64004 1.82350 2.29195 2.45669 2.73222 3.16371 3.31441 3.68418 3.92808 4.05324 4.09258 4.32406 4.39167 4.46375 4.50232 4.88845 4.91535 4.98744 5.06926 5.10165 5.20882 5.30075 5.36091 5.48243 5.60580 5.69736 5.92342 6.17071 6.24372 6.77807 6.78699 6.87303 7.35198 7.50758 8.92726 Molecular weight = 299.11amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.004270 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.982377 B = 6555.343347 C = 6919.707573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 C -0.157 4.157 4 N -0.594 5.594 5 C 0.266 3.734 6 C -0.522 4.522 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.956 3.044 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.263 1.263 14 C 0.499 3.501 15 O -0.577 6.577 16 C -0.110 4.110 17 C -0.096 4.096 18 H 0.156 0.844 19 S 0.000 6.000 20 C 0.381 3.619 21 N -0.673 5.673 22 N -0.675 5.675 23 C 0.551 3.449 24 O -0.504 6.504 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.026 0.974 33 H -0.005 1.005 34 H 0.263 0.737 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.360 0.640 38 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 -4.738 -18.300 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.021 3.979 3 C -0.214 4.214 4 N -0.324 5.324 5 C 0.144 3.856 6 C -0.561 4.561 7 H 0.073 0.927 8 C -0.190 4.190 9 N -0.571 5.571 10 Si 0.781 3.219 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.188 1.188 14 C 0.287 3.713 15 O -0.458 6.458 16 C -0.151 4.151 17 C -0.229 4.229 18 H 0.173 0.827 19 S 0.226 5.774 20 C -0.010 4.010 21 N -0.309 5.309 22 N -0.331 5.331 23 C 0.334 3.666 24 O -0.376 6.376 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.135 0.865 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.182 0.818 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 8.089 -4.407 -16.175 18.613 hybrid contribution -1.154 -1.152 -1.241 2.049 sum 6.934 -5.559 -17.416 19.552 Atomic orbital electron populations 1.22090 0.94883 1.01705 1.02315 1.21453 0.95065 0.94277 0.87115 1.22118 1.01071 0.95271 1.02989 1.48298 1.51413 1.24255 1.08465 1.18658 0.94404 0.93461 0.79027 1.21643 1.06657 1.25756 1.02070 0.92716 1.25726 1.00776 0.95605 0.96911 1.70034 1.40438 1.34609 1.11983 0.85648 0.80182 0.78385 0.77671 1.20519 1.20901 1.18766 1.20780 0.78376 0.80890 0.91262 1.90684 1.57121 1.56677 1.41292 1.21677 1.03209 0.94381 0.95822 1.24015 0.99148 1.03835 0.95903 0.82692 1.88468 0.96036 1.79887 1.13024 1.24824 0.91240 0.93472 0.91428 1.70035 1.02198 1.25022 1.33615 1.44298 1.06934 1.62701 1.19169 1.19337 0.82190 0.76761 0.88325 1.90854 1.52622 1.48185 1.45926 0.93929 0.89276 0.93766 0.86513 0.92468 0.88558 0.94196 0.95570 0.98643 0.92765 0.84434 0.85137 0.81759 0.73345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 8.38 71.98 0.60 -3.82 16 2 C 0.12 3.43 3.16 44.99 0.14 3.57 16 3 C -0.16 -3.98 8.93 71.98 0.64 -3.34 16 4 N -0.59 -22.82 2.39 -802.15 -1.92 -24.74 16 5 C 0.27 13.51 4.68 85.63 0.40 13.91 16 6 C -0.52 -28.68 8.02 25.60 0.21 -28.48 16 7 H 0.05 2.97 7.49 -2.91 -0.02 2.95 16 8 C 0.01 0.46 5.46 84.65 0.46 0.93 16 9 N -0.93 -55.44 13.29 21.44 0.28 -55.16 16 10 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 14 C 0.50 18.23 7.43 87.66 0.65 18.89 16 15 O -0.58 -26.42 14.59 -3.02 -0.04 -26.46 16 16 C -0.11 -2.58 3.61 29.85 0.11 -2.47 16 17 C -0.10 -2.24 2.88 29.97 0.09 -2.15 16 18 H 0.16 3.81 8.05 -2.39 -0.02 3.79 16 19 S 0.00 0.01 21.45 -56.49 -1.21 -1.20 16 20 C 0.38 7.58 8.92 179.67 1.60 9.18 16 21 N -0.67 -13.29 14.13 -56.36 -0.80 -14.09 16 22 N -0.68 -10.67 5.22 -312.68 -1.63 -12.31 16 23 C 0.55 11.00 7.52 88.18 0.66 11.66 16 24 O -0.50 -12.14 18.01 -2.93 -0.05 -12.19 16 25 H 0.04 1.54 7.33 -2.38 -0.02 1.52 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.38 8.03 -2.39 -0.02 1.36 16 28 H 0.12 2.28 5.78 -2.38 -0.01 2.27 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.25 6.87 -2.39 -0.02 1.23 16 32 H 0.03 1.37 6.40 -2.39 -0.02 1.36 16 33 H 0.00 -0.27 7.50 -2.39 -0.02 -0.29 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.14 2.67 7.55 -2.39 -0.02 2.65 16 36 H 0.13 2.38 7.99 -2.39 -0.02 2.36 16 37 H 0.36 4.92 8.92 -92.71 -0.83 4.09 16 38 H 0.43 4.38 8.91 -92.70 -0.83 3.55 16 Total: -1.00 -72.88 332.48 1.69 -71.20 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -0.54 Total: 10.61 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 5.57 Total: 17.87 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -4.06 Total: -106.29 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.10 Total: -38.65 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.21 Total: -1.20 kcal Total: -72.88 1.69 -71.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742605956.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.643 kcal (2) G-P(sol) polarization free energy of solvation -72.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds