Wall clock time and date at job start Fri Apr 10 2020 17:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00168 * 2 1 4 4 H 1.48502 * 109.47270 * 270.00335 * 3 2 1 5 5 H 1.48508 * 109.46849 * 30.00204 * 3 2 1 6 6 H 1.48490 * 109.47200 * 149.99921 * 3 2 1 7 7 C 1.37873 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00015 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00519 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47544 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47274 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47274 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47306 * 180.02562 * 12 11 10 14 14 O 1.20828 * 119.99788 * 359.97438 * 13 12 11 15 15 O 1.34233 * 120.00373 * 180.02562 * 13 12 11 16 16 C 1.45197 * 117.00172 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46582 * 179.97438 * 16 15 13 18 18 O 1.21276 * 120.00509 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99389 * 180.02562 * 17 16 15 20 20 C 1.47164 * 120.94464 * 359.97438 * 19 17 16 21 21 C 1.53300 * 108.37481 * 230.47489 * 20 19 17 22 22 O 1.42961 * 109.26618 * 307.77372 * 21 20 19 23 23 C 1.42967 * 114.16831 * 62.55217 * 22 21 20 24 24 C 1.47157 * 120.97899 * 180.02562 * 19 17 16 25 25 H 0.97005 * 120.00164 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46851 * 59.99298 * 9 7 2 27 27 H 1.09002 * 109.46498 * 300.00022 * 9 7 2 28 28 H 1.09001 * 109.46871 * 59.99671 * 10 9 7 29 29 H 1.09002 * 109.46847 * 300.00438 * 10 9 7 30 30 H 1.09005 * 109.46961 * 59.99849 * 11 10 9 31 31 H 1.08997 * 109.47274 * 299.99670 * 11 10 9 32 32 H 1.08994 * 109.47214 * 59.99508 * 12 11 10 33 33 H 1.09005 * 109.46766 * 299.99714 * 12 11 10 34 34 H 1.09000 * 109.46644 * 60.00215 * 16 15 13 35 35 H 1.08994 * 109.47216 * 300.00102 * 16 15 13 36 36 H 1.08996 * 109.64217 * 110.78153 * 20 19 17 37 37 H 1.08999 * 109.72598 * 350.21805 * 20 19 17 38 38 H 1.09002 * 109.51290 * 187.82368 * 21 20 19 39 39 H 1.08997 * 109.51158 * 67.72466 * 21 20 19 40 40 H 1.09005 * 109.50496 * 57.34540 * 23 22 21 41 41 H 1.08995 * 109.51193 * 177.44508 * 23 22 21 42 42 H 1.09004 * 109.67827 * 9.75528 * 24 19 17 43 43 H 1.09000 * 109.68235 * 249.19910 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0616 -4.0790 -0.0028 13 6 7.5685 -4.0790 -0.0033 14 8 8.1726 -3.0325 -0.0038 15 8 8.2398 -5.2414 -0.0044 16 6 9.6897 -5.1654 -0.0055 17 6 10.2657 -6.5580 -0.0059 18 8 9.5269 -7.5198 -0.0058 19 7 11.6019 -6.7345 -0.0064 20 6 12.5174 -5.5823 -0.0071 21 6 13.5425 -5.7803 -1.1296 22 8 14.1441 -7.0703 -0.9969 23 6 13.2281 -8.1599 -1.1300 24 6 12.1876 -8.0845 -0.0074 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8744 -0.6800 -0.8912 28 1 3.6579 -3.1505 -0.8907 29 1 3.6585 -3.1501 0.8892 30 1 5.9156 -2.1223 0.8873 31 1 5.9141 -2.1231 -0.8927 32 1 5.6975 -4.5928 -0.8924 33 1 5.6990 -4.5928 0.8876 34 1 10.0263 -4.6336 0.8845 35 1 10.0250 -4.6328 -0.8954 36 1 13.0309 -5.5218 0.9525 37 1 11.9546 -4.6653 -0.1814 38 1 14.3116 -5.0110 -1.0601 39 1 13.0428 -5.7092 -2.0956 40 1 12.7264 -8.0977 -2.0957 41 1 13.7711 -9.1024 -1.0617 42 1 11.4056 -8.8237 -0.1815 43 1 12.6683 -8.2768 0.9518 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805698434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:11 Heat of formation + Delta-G solvation = -174.353449 kcal Electronic energy + Delta-G solvation = -23500.312727 eV Core-core repulsion = 19738.684130 eV Total energy + Delta-G solvation = -3761.628597 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11917 -40.39236 -38.77974 -36.74513 -35.37793 -35.14511 -32.67793 -32.30886 -30.59902 -29.65710 -27.89110 -26.09297 -24.69823 -23.00691 -22.38618 -20.61229 -20.10834 -19.93641 -18.16190 -17.57572 -17.21622 -17.06930 -16.63752 -16.56873 -16.12152 -15.82772 -15.57966 -15.42615 -14.87482 -14.28438 -14.16626 -14.01988 -13.26032 -13.20309 -13.02406 -12.64554 -12.47627 -12.41519 -12.24717 -12.05291 -11.80229 -11.38344 -11.18643 -11.09734 -10.83710 -10.82735 -10.66156 -10.60889 -10.29245 -9.89631 -9.69798 -9.55897 -9.23127 -9.15096 -8.51280 -6.01933 -3.99756 1.79818 1.98303 2.10833 2.71521 3.16038 3.33215 3.40426 3.45330 3.78276 4.04143 4.26444 4.39774 4.43709 4.47958 4.53869 4.56498 4.63115 4.72651 4.81265 4.96233 5.06177 5.11084 5.13474 5.17528 5.27042 5.32523 5.59564 5.71162 5.92480 6.01372 6.14753 6.30838 6.42652 6.59085 6.60926 6.72574 6.93552 7.33643 7.46345 7.50717 7.62201 7.82420 8.56454 9.03134 9.60941 11.11498 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.042096 B = 0.002003 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.984247 B =13975.084403 C =14491.241931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.111 4.111 12 C -0.110 4.110 13 C 0.463 3.537 14 O -0.507 6.507 15 O -0.337 6.337 16 C 0.048 3.952 17 C 0.521 3.479 18 O -0.510 6.510 19 N -0.617 5.617 20 C 0.067 3.933 21 C 0.046 3.954 22 O -0.378 6.378 23 C 0.047 3.953 24 C 0.079 3.921 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.012 0.988 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.972 -15.049 -1.156 34.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.148 4.148 13 C 0.307 3.693 14 O -0.394 6.394 15 O -0.253 6.253 16 C -0.029 4.029 17 C 0.308 3.692 18 O -0.384 6.384 19 N -0.355 5.355 20 C -0.056 4.056 21 C -0.031 4.031 22 O -0.296 6.296 23 C -0.030 4.030 24 C -0.044 4.044 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 30.788 -15.175 -1.118 34.343 hybrid contribution 0.290 1.140 -0.025 1.177 sum 31.078 -14.035 -1.143 34.119 Atomic orbital electron populations 1.69919 1.06297 1.26837 1.51331 1.25047 0.94746 0.99223 0.94626 0.86769 0.80385 0.83585 0.78502 1.20326 1.21444 1.18963 1.21172 0.89592 0.94446 1.50619 0.91027 1.19576 0.97025 0.92295 0.96349 1.21480 0.90991 1.00185 1.01395 1.21619 0.97902 0.92132 1.03188 1.21613 0.84939 1.02111 1.06116 1.24376 0.92385 0.80875 0.71671 1.90669 1.70448 1.32875 1.45374 1.86621 1.18695 1.35545 1.84420 1.22616 0.80222 0.95163 1.04917 1.20137 0.81745 0.90810 0.76537 1.90765 1.58035 1.42018 1.47555 1.48034 1.04900 1.07690 1.74891 1.22580 0.92746 0.89095 1.01178 1.22999 0.96672 0.86236 0.97209 1.87995 1.34381 1.13987 1.93276 1.23021 0.91509 0.91000 0.97497 1.22332 0.97514 0.84338 1.00177 0.92792 0.96578 0.97014 0.92519 0.92479 0.91478 0.91498 0.87419 0.87418 0.88060 0.88155 0.89664 0.88504 0.87127 0.92274 0.92365 0.87229 0.87702 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.36 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.96 5.15 -26.74 -0.14 -2.10 16 11 C -0.11 -1.75 4.50 -26.74 -0.12 -1.87 16 12 C -0.11 -1.40 5.81 -27.89 -0.16 -1.56 16 13 C 0.46 6.18 7.96 36.00 0.29 6.47 16 14 O -0.51 -7.76 15.73 -18.75 -0.29 -8.05 16 15 O -0.34 -4.27 9.75 -45.91 -0.45 -4.72 16 16 C 0.05 0.46 4.32 36.00 0.16 0.61 16 17 C 0.52 5.31 7.79 -10.98 -0.09 5.22 16 18 O -0.51 -7.24 15.97 -14.10 -0.23 -7.46 16 19 N -0.62 -4.47 3.02 -172.29 -0.52 -4.99 16 20 C 0.07 0.30 6.54 -3.52 -0.02 0.27 16 21 C 0.05 0.20 6.98 37.31 0.26 0.46 16 22 O -0.38 -2.41 10.74 -35.23 -0.38 -2.78 16 23 C 0.05 0.24 6.98 37.29 0.26 0.50 16 24 C 0.08 0.49 6.64 -3.55 -0.02 0.46 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 0.79 8.01 -51.93 -0.42 0.38 16 35 H 0.10 0.77 7.65 -51.93 -0.40 0.37 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.30 6.05 -51.93 -0.31 -0.01 16 38 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.10 0.75 7.08 -51.93 -0.37 0.39 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -36.28 356.73 -7.44 -43.72 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -6.92 Total: -5.54 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.13 Total: -5.52 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.25 Total: -32.41 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.35 Total: -23.02 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.28 -7.44 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.638 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds