Wall clock time and date at job start Fri Apr 10 2020 17:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.21605 * 2 1 4 4 C 1.53009 * 109.47160 * 300.70032 * 3 2 1 5 5 C 1.50696 * 109.47179 * 179.97438 * 4 3 2 6 6 O 1.20831 * 119.99892 * 0.02562 * 5 4 3 7 7 O 1.34221 * 120.00221 * 180.02562 * 5 4 3 8 8 C 1.45201 * 117.00608 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47459 * 180.02562 * 8 7 5 10 10 O 1.42898 * 109.46867 * 65.00001 * 9 8 7 11 11 C 1.42908 * 113.99824 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47099 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00060 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00045 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00018 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00057 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47155 * 90.00488 * 16 14 12 18 18 H 1.48501 * 109.47456 * 209.99988 * 16 14 12 19 19 H 1.48497 * 109.47629 * 330.00319 * 16 14 12 20 20 C 1.54482 * 110.24937 * 121.92867 * 2 1 3 21 21 C 1.54633 * 101.76156 * 93.58366 * 20 2 1 22 22 C 1.51280 * 104.19839 * 24.80215 * 21 20 2 23 23 O 1.21280 * 124.94580 * 163.77874 * 22 21 20 24 24 N 1.34423 * 110.11287 * 343.74712 * 22 21 20 25 25 H 1.09002 * 109.47153 * 298.06917 * 1 2 3 26 26 H 1.09001 * 109.46832 * 178.07108 * 1 2 3 27 27 H 1.09004 * 109.47261 * 58.07089 * 1 2 3 28 28 H 1.08995 * 109.47432 * 60.70083 * 3 2 1 29 29 H 1.09000 * 109.46999 * 180.70583 * 3 2 1 30 30 H 1.08995 * 109.46990 * 300.00321 * 4 3 2 31 31 H 1.09001 * 109.46625 * 59.99597 * 4 3 2 32 32 H 1.09006 * 109.46486 * 300.00063 * 8 7 5 33 33 H 1.09002 * 109.46775 * 59.99491 * 8 7 5 34 34 H 1.08995 * 109.47079 * 184.99891 * 9 8 7 35 35 H 1.09000 * 109.47032 * 304.99714 * 9 8 7 36 36 H 1.09000 * 109.46929 * 299.99953 * 11 10 9 37 37 H 1.08997 * 109.46577 * 59.99944 * 11 10 9 38 38 H 0.96993 * 120.00146 * 180.02562 * 15 14 12 39 39 H 1.08999 * 110.97153 * 211.70356 * 20 2 1 40 40 H 1.08993 * 110.96474 * 335.43263 * 20 2 1 41 41 H 1.09004 * 110.48006 * 143.48107 * 21 20 2 42 42 H 1.08995 * 110.48488 * 265.98865 * 21 20 2 43 43 H 0.97000 * 124.35011 * 179.59421 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 6 1.5438 2.1689 -1.2404 5 6 2.0640 3.5832 -1.2401 6 8 2.7742 3.9655 -0.3403 7 8 1.7386 4.4183 -2.2392 8 6 2.2760 5.7656 -2.1740 9 6 1.7996 6.5642 -3.3889 10 8 0.3804 6.7200 -3.3297 11 6 -0.1696 7.4563 -4.4241 12 6 -1.6642 7.5583 -4.2603 13 1 -2.1459 7.1064 -3.4057 14 6 -2.4166 8.2294 -5.2008 15 7 -1.8300 8.7801 -6.2411 16 14 -4.2691 8.3564 -4.9974 17 1 -4.5994 9.5799 -4.2232 18 1 -4.9102 8.4291 -6.3349 19 1 -4.7707 7.1615 -4.2723 20 6 2.0646 -0.7665 1.2301 21 6 2.2625 -2.1879 0.6542 22 6 2.4509 -1.9640 -0.8300 23 8 2.9074 -2.7793 -1.6032 24 7 2.0379 -0.7301 -1.1675 25 1 -0.3633 0.4836 0.9068 26 1 -0.3633 -1.0271 -0.0346 27 1 -0.3634 0.5435 -0.8722 28 1 1.7124 1.9505 0.8961 29 1 3.1485 1.4216 -0.0127 30 1 1.8901 1.6541 -2.1365 31 1 0.4540 2.1829 -1.2278 32 1 1.9293 6.2512 -1.2617 33 1 3.3651 5.7225 -2.1712 34 1 2.2733 7.5458 -3.3869 35 1 2.0690 6.0326 -4.3015 36 1 0.2632 8.4565 -4.4431 37 1 0.0590 6.9436 -5.3583 38 1 -2.3593 9.2525 -6.9026 39 1 3.0121 -0.3476 1.5692 40 1 1.3312 -0.7703 2.0363 41 1 3.1486 -2.6541 1.0852 42 1 1.3810 -2.8011 0.8407 43 1 2.0713 -0.3687 -2.0670 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815230316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:27 Heat of formation + Delta-G solvation = -211.516632 kcal Electronic energy + Delta-G solvation = -23782.937444 eV Core-core repulsion = 20019.697331 eV Total energy + Delta-G solvation = -3763.240113 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.84205 -41.29604 -38.84616 -38.36324 -37.42340 -34.95504 -34.25592 -32.29239 -31.78103 -30.32949 -29.02285 -27.15598 -24.95871 -24.52510 -23.46610 -21.98956 -21.75216 -20.73955 -18.95445 -18.68939 -18.02599 -17.91451 -17.28331 -17.22878 -16.95953 -16.50081 -16.23783 -15.97361 -15.29135 -15.24681 -15.02045 -14.64378 -14.38827 -14.10883 -13.74817 -13.65246 -13.53168 -13.30786 -13.14413 -13.08826 -12.91746 -12.70697 -12.58606 -12.43347 -12.06545 -12.01073 -11.82109 -11.72467 -11.58673 -11.48693 -11.28940 -10.93790 -10.90244 -10.28690 -10.16079 -8.32997 -6.45367 1.16449 1.40751 1.43292 1.55392 1.57619 1.68640 2.34117 2.39040 3.01133 3.04864 3.32406 3.44481 3.65715 3.77872 3.91566 3.97520 4.08089 4.10181 4.17106 4.29428 4.40018 4.44517 4.51797 4.57401 4.68754 4.76563 4.84353 4.91737 4.92966 4.97062 5.11427 5.15324 5.16125 5.18837 5.40421 5.49305 5.53637 5.88473 5.94020 6.05416 6.48437 6.70353 6.78460 7.24601 7.26334 8.79219 Molecular weight = 299.16amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002446 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.285108 B =11443.222645 C =12129.281363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.159 3.841 3 C -0.102 4.102 4 C -0.116 4.116 5 C 0.458 3.542 6 O -0.538 6.538 7 O -0.362 6.362 8 C 0.079 3.921 9 C 0.052 3.948 10 O -0.408 6.408 11 C 0.207 3.793 12 C -0.549 4.549 13 H 0.062 0.938 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.983 3.017 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.263 1.263 20 C -0.116 4.116 21 C -0.150 4.150 22 C 0.509 3.491 23 O -0.595 6.595 24 N -0.718 5.718 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.055 0.945 36 H -0.009 1.009 37 H -0.011 1.011 38 H 0.271 0.729 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.080 -18.431 16.525 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.073 3.927 3 C -0.140 4.140 4 C -0.154 4.154 5 C 0.303 3.697 6 O -0.428 6.428 7 O -0.279 6.279 8 C 0.005 3.995 9 C -0.024 4.024 10 O -0.328 6.328 11 C 0.133 3.867 12 C -0.587 4.587 13 H 0.080 0.920 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.806 3.194 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.188 1.188 20 C -0.154 4.154 21 C -0.190 4.190 22 C 0.297 3.703 23 O -0.476 6.476 24 N -0.372 5.372 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.144 0.856 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.009 0.991 37 H 0.007 0.993 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 7.381 -18.706 16.486 26.003 hybrid contribution -0.267 0.885 -1.164 1.486 sum 7.113 -17.821 15.322 24.555 Atomic orbital electron populations 1.22324 0.92461 1.03321 1.04154 1.21186 0.95037 0.90811 0.85634 1.21726 1.01650 0.93182 0.97429 1.21647 1.04685 0.86427 1.02593 1.24413 0.77166 0.89573 0.78529 1.90634 1.36804 1.78365 1.37043 1.86600 1.69196 1.24262 1.47820 1.23145 0.98998 0.78521 0.98816 1.22648 0.83351 0.98949 0.97497 1.87854 1.20171 1.76346 1.48404 1.19875 0.93675 0.89124 0.84061 1.21381 0.92146 1.35880 1.09278 0.92012 1.25963 1.05023 0.94164 0.94093 1.70060 1.38369 1.36102 1.12396 0.85180 0.77150 0.79142 0.77936 1.19297 1.19977 1.18752 1.22778 1.04004 0.92180 0.96414 1.22395 1.06223 0.99987 0.90378 1.21581 0.75000 0.81262 0.92430 1.90734 1.48148 1.49334 1.59419 1.46609 1.63124 1.15479 1.12035 0.89087 0.91578 0.91787 0.88515 0.90861 0.86717 0.85574 0.90965 0.87577 0.90198 0.92704 0.99083 0.99350 0.92005 0.89084 0.86220 0.87348 0.86155 0.75269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.47 71.98 0.61 -0.62 16 2 C 0.16 1.42 0.87 4.06 0.00 1.42 16 3 C -0.10 -1.20 3.71 30.60 0.11 -1.08 16 4 C -0.12 -1.78 5.32 29.85 0.16 -1.63 16 5 C 0.46 11.48 7.96 71.23 0.57 12.05 16 6 O -0.54 -15.49 15.73 21.95 0.35 -15.14 16 7 O -0.36 -11.13 10.19 -48.69 -0.50 -11.63 16 8 C 0.08 2.35 5.84 71.98 0.42 2.77 16 9 C 0.05 1.86 6.33 71.98 0.46 2.32 16 10 O -0.41 -19.67 10.30 -145.57 -1.50 -21.17 16 11 C 0.21 11.49 5.69 71.24 0.41 11.90 16 12 C -0.55 -32.40 9.43 25.60 0.24 -32.16 16 13 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 14 C 0.01 0.35 5.46 84.65 0.46 0.81 16 15 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 16 Si 0.98 43.68 29.54 68.60 2.03 45.70 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C -0.12 -0.65 6.21 31.65 0.20 -0.45 16 21 C -0.15 -1.37 6.86 30.59 0.21 -1.16 16 22 C 0.51 9.30 8.43 87.90 0.74 10.04 16 23 O -0.59 -17.20 18.03 -3.03 -0.05 -17.26 16 24 N -0.72 -9.74 5.39 -419.97 -2.26 -12.00 16 25 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.57 6.39 -2.38 -0.02 0.55 16 28 H 0.10 1.09 8.10 -2.39 -0.02 1.07 16 29 H 0.07 1.02 8.10 -2.39 -0.02 1.00 16 30 H 0.11 1.46 6.90 -2.39 -0.02 1.44 16 31 H 0.13 1.67 6.43 -2.39 -0.02 1.65 16 32 H 0.07 2.22 8.13 -2.38 -0.02 2.20 16 33 H 0.11 2.55 8.13 -2.39 -0.02 2.53 16 34 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.09 0.48 7.91 -2.39 -0.02 0.46 16 40 H 0.12 0.13 7.89 -2.39 -0.02 0.11 16 41 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.41 5.47 7.69 -92.71 -0.71 4.75 16 Total: -1.00 -78.53 361.30 3.22 -75.30 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.30 Total: 6.95 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 4.58 Total: 4.21 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -1.98 Total: -66.98 kcal Atomic # 8 Polarization: -63.49 SS G_CDS: -1.70 Total: -65.19 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -78.53 3.22 -75.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.212 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds