Wall clock time and date at job start Fri Apr 10 2020 17:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 N 1.40103 * 119.99524 * 179.97438 * 5 3 2 7 7 C 1.34780 * 119.99524 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.46927 * 300.00473 * 9 7 6 11 11 C 1.53006 * 109.46667 * 60.00377 * 9 7 6 12 12 N 1.46898 * 109.47102 * 180.02562 * 9 7 6 13 13 C 1.47907 * 110.99855 * 59.87610 * 12 9 7 14 14 C 1.53995 * 107.05881 * 214.15666 * 13 12 9 15 15 C 1.54601 * 105.13656 * 1.22252 * 14 13 12 16 16 O 1.42898 * 110.72314 * 263.41962 * 15 14 13 17 17 C 1.50705 * 110.72072 * 140.31908 * 15 14 13 18 18 H 1.07998 * 119.99650 * 241.45708 * 17 15 14 19 19 C 1.37873 * 120.00194 * 61.45107 * 17 15 14 20 20 N 1.31517 * 119.99853 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00323 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47373 * 89.99711 * 21 19 17 23 23 H 1.48499 * 109.47517 * 210.00286 * 21 19 17 24 24 H 1.48506 * 109.46984 * 330.00147 * 21 19 17 25 25 C 1.48533 * 111.00053 * 302.48264 * 12 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 31 31 H 0.96995 * 120.00011 * 0.02562 * 5 3 2 32 32 H 0.96995 * 120.00466 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46289 * 179.97438 * 11 9 7 34 34 H 1.08992 * 109.47342 * 299.99487 * 11 9 7 35 35 H 1.08998 * 109.46876 * 60.00364 * 11 9 7 36 36 H 1.09003 * 109.91752 * 333.50779 * 13 12 9 37 37 H 1.08996 * 109.91903 * 94.80064 * 13 12 9 38 38 H 1.08999 * 110.30873 * 120.13634 * 14 13 12 39 39 H 1.09000 * 110.30438 * 242.31287 * 14 13 12 40 40 H 0.96698 * 114.00013 * 298.55049 * 16 15 14 41 41 H 0.97002 * 119.99633 * 179.97438 * 20 19 17 42 42 H 1.09004 * 110.66149 * 278.15480 * 25 12 9 43 43 H 1.08994 * 110.66860 * 41.28146 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 7 3.8244 2.9880 0.0000 7 6 5.1495 3.2342 0.0000 8 8 5.9376 2.3123 0.0000 9 6 5.6519 4.6550 0.0000 10 1 5.2885 5.1688 -0.8900 11 6 5.1419 5.3761 1.2494 12 7 7.1209 4.6550 -0.0006 13 6 7.6504 3.9621 -1.1953 14 6 8.9498 3.2545 -0.7683 15 6 9.1013 3.5637 0.7388 16 8 9.9731 4.6777 0.9413 17 6 9.6037 2.3537 1.4835 18 1 8.9997 1.9085 2.2603 19 6 10.8343 1.8149 1.1731 20 7 11.5694 2.3567 0.2267 21 14 11.4567 0.3146 2.0956 22 1 11.0172 -0.9169 1.3917 23 1 12.9402 0.3492 2.1533 24 1 10.9074 0.3188 3.4753 25 6 7.6537 3.9101 1.1688 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9877 0.9298 0.0005 32 1 3.1942 3.7252 -0.0004 33 1 5.5057 6.4037 1.2495 34 1 4.0520 5.3762 1.2494 35 1 5.5054 4.8623 2.1392 36 1 6.9270 3.2278 -1.5498 37 1 7.8632 4.6869 -1.9811 38 1 8.8650 2.1795 -0.9273 39 1 9.7982 3.6543 -1.3237 40 1 10.8733 4.5367 0.6175 41 1 12.4354 1.9778 0.0085 42 1 7.6568 4.5409 2.0577 43 1 7.0762 3.0021 1.3422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329273998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:58 Heat of formation + Delta-G solvation = -75.801592 kcal Electronic energy + Delta-G solvation = -25595.355909 eV Core-core repulsion = 21870.293593 eV Total energy + Delta-G solvation = -3725.062316 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77042 -39.68524 -37.57173 -35.45890 -34.78956 -33.30660 -32.39277 -32.01362 -30.53454 -28.12278 -27.62170 -25.24938 -24.70256 -23.16277 -21.43196 -20.87293 -19.76920 -19.39332 -17.97264 -17.58559 -16.88912 -16.30097 -16.09885 -15.46625 -15.14570 -14.81295 -14.57087 -14.21802 -14.14739 -13.74465 -13.41083 -13.19130 -12.75355 -12.60897 -12.37094 -12.10717 -12.02049 -11.82139 -11.52040 -11.48334 -11.24092 -11.09422 -10.84244 -10.76696 -10.52766 -10.39756 -10.35743 -10.20496 -10.11377 -9.62646 -9.03538 -8.49856 -8.40242 -8.00644 -7.67260 -6.11028 -4.17085 1.76592 2.17326 2.69068 3.27361 3.33964 3.38113 3.87909 4.29517 4.37709 4.51939 4.70273 4.74315 4.86900 5.09623 5.17252 5.19036 5.21885 5.46176 5.58731 5.61976 5.81200 5.87074 5.88840 6.10180 6.13138 6.24468 6.36957 6.50437 6.58435 6.66747 6.72601 6.97797 7.21167 7.37600 7.45399 7.61997 7.64774 7.67119 7.78999 7.92322 8.28725 8.32973 8.84209 9.50182 9.64471 10.96344 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.004054 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.416801 B = 6905.828632 C = 7983.210686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 C 0.510 3.490 4 O -0.547 6.547 5 N -0.525 5.525 6 N -0.530 5.530 7 C 0.478 3.522 8 O -0.508 6.508 9 C 0.066 3.934 10 H 0.106 0.894 11 C -0.142 4.142 12 N -0.482 5.482 13 C 0.031 3.969 14 C -0.118 4.118 15 C 0.259 3.741 16 O -0.583 6.583 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.069 3.931 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.040 3.960 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.432 0.568 32 H 0.427 0.573 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.376 0.624 41 H 0.265 0.735 42 H 0.065 0.935 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.641 -1.451 -2.246 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.296 3.704 4 O -0.423 6.423 5 N -0.272 5.272 6 N -0.282 5.282 7 C 0.264 3.736 8 O -0.381 6.381 9 C -0.049 4.049 10 H 0.124 0.876 11 C -0.199 4.199 12 N -0.204 5.204 13 C -0.096 4.096 14 C -0.157 4.157 15 C 0.219 3.781 16 O -0.391 6.391 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.087 4.087 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.274 0.726 32 H 0.269 0.731 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.225 0.775 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.793 -0.658 -2.067 17.925 hybrid contribution 0.653 -2.067 0.051 2.168 sum -17.141 -2.724 -2.015 17.472 Atomic orbital electron populations 1.21536 0.92427 1.01898 1.03509 1.21578 0.98806 0.92163 1.05109 1.21097 0.80250 0.92720 0.76307 1.90712 1.54819 1.46289 1.50518 1.45089 1.07213 0.99346 1.75574 1.45605 1.07590 0.97599 1.77360 1.23054 0.79938 0.94527 0.76115 1.90811 1.53550 1.46004 1.47689 1.22138 0.92328 0.89078 1.01401 0.87574 1.21818 0.99803 1.02006 0.96306 1.65279 1.00868 1.49426 1.04849 1.23005 0.98470 0.95870 0.92249 1.22792 0.93710 0.99288 0.99927 1.19275 0.85051 0.84105 0.89699 1.86129 1.25425 1.42053 1.85518 1.21566 1.02934 1.12146 1.19905 0.92386 1.24979 0.96541 0.97069 0.94671 1.69741 1.12210 1.41313 1.30411 0.86510 0.77824 0.82845 0.80281 1.20700 1.21142 1.19885 1.23535 0.96790 0.96489 0.91845 0.91861 0.91698 0.91827 0.88339 0.88287 0.72626 0.73134 0.90080 0.92254 0.91621 0.93739 0.92333 0.92027 0.92017 0.77464 0.92553 0.91649 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.93 6.42 -27.88 -0.18 -1.11 16 3 C 0.51 5.50 7.95 -10.98 -0.09 5.41 16 4 O -0.55 -7.58 15.82 5.56 0.09 -7.49 16 5 N -0.52 -6.05 6.26 31.22 0.20 -5.85 16 6 N -0.53 -6.66 6.15 31.22 0.19 -6.47 16 7 C 0.48 7.31 6.16 -10.98 -0.07 7.24 16 8 O -0.51 -9.74 11.59 5.56 0.06 -9.68 16 9 C 0.07 0.96 2.85 -68.86 -0.20 0.76 16 10 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 11 C -0.14 -1.73 9.00 37.16 0.33 -1.39 16 12 N -0.48 -9.29 5.30 -223.88 -1.19 -10.48 16 13 C 0.03 0.64 6.00 -2.75 -0.02 0.62 16 14 C -0.12 -2.88 5.26 -25.37 -0.13 -3.02 16 15 C 0.26 6.68 0.95 -89.91 -0.09 6.60 16 16 O -0.58 -15.75 13.09 -35.23 -0.46 -16.21 16 17 C -0.53 -14.70 8.14 -34.44 -0.28 -14.98 16 18 H 0.06 1.63 7.78 -52.49 -0.41 1.22 16 19 C 0.07 1.89 5.28 -17.82 -0.09 1.79 16 20 N -0.90 -24.67 11.00 55.43 0.61 -24.06 16 21 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.04 0.89 4.26 -1.90 -0.01 0.88 16 26 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.43 4.73 8.00 -182.60 -1.46 3.26 16 32 H 0.43 4.74 7.42 -182.60 -1.35 3.38 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 35 H 0.06 0.90 7.00 -51.93 -0.36 0.54 16 36 H 0.04 0.89 5.65 -51.93 -0.29 0.59 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.62 7.84 -51.93 -0.41 1.21 16 39 H 0.06 1.56 7.98 -51.93 -0.41 1.15 16 40 H 0.38 10.24 7.46 45.56 0.34 10.58 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.07 1.46 7.67 -51.93 -0.40 1.06 16 43 H 0.08 1.77 5.06 -51.93 -0.26 1.50 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -32.78 344.33 -8.73 -41.52 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -7.93 Total: 15.03 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -0.47 Total: 2.22 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.19 Total: -46.86 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.31 Total: -33.38 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.78 -8.73 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329273998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.286 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds