Wall clock time and date at job start Fri Apr 10 2020 17:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 N 1.40103 * 119.99524 * 179.97438 * 5 3 2 7 7 C 1.34780 * 119.99524 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 H 1.09001 * 109.46927 * 300.00473 * 9 7 6 11 11 C 1.53006 * 109.46667 * 60.00377 * 9 7 6 12 12 N 1.46898 * 109.47102 * 180.02562 * 9 7 6 13 13 C 1.47907 * 110.99855 * 59.87610 * 12 9 7 14 14 C 1.53995 * 107.05881 * 214.15666 * 13 12 9 15 15 C 1.54601 * 105.13656 * 1.22252 * 14 13 12 16 16 O 1.42898 * 110.72314 * 263.41962 * 15 14 13 17 17 C 1.50705 * 110.72072 * 140.31908 * 15 14 13 18 18 H 1.07998 * 119.99650 * 241.45708 * 17 15 14 19 19 C 1.37873 * 120.00194 * 61.45107 * 17 15 14 20 20 N 1.31517 * 119.99853 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00323 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47373 * 89.99711 * 21 19 17 23 23 H 1.48499 * 109.47517 * 210.00286 * 21 19 17 24 24 H 1.48506 * 109.46984 * 330.00147 * 21 19 17 25 25 C 1.48533 * 111.00053 * 302.48264 * 12 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 30 30 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 31 31 H 0.96995 * 120.00011 * 0.02562 * 5 3 2 32 32 H 0.96995 * 120.00466 * 0.02562 * 6 5 3 33 33 H 1.09001 * 109.46289 * 179.97438 * 11 9 7 34 34 H 1.08992 * 109.47342 * 299.99487 * 11 9 7 35 35 H 1.08998 * 109.46876 * 60.00364 * 11 9 7 36 36 H 1.09003 * 109.91752 * 333.50779 * 13 12 9 37 37 H 1.08996 * 109.91903 * 94.80064 * 13 12 9 38 38 H 1.08999 * 110.30873 * 120.13634 * 14 13 12 39 39 H 1.09000 * 110.30438 * 242.31287 * 14 13 12 40 40 H 0.96698 * 114.00013 * 298.55049 * 16 15 14 41 41 H 0.97002 * 119.99633 * 179.97438 * 20 19 17 42 42 H 1.09004 * 110.66149 * 278.15480 * 25 12 9 43 43 H 1.08994 * 110.66860 * 41.28146 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 7 3.8244 2.9880 0.0000 7 6 5.1495 3.2342 0.0000 8 8 5.9376 2.3123 0.0000 9 6 5.6519 4.6550 0.0000 10 1 5.2885 5.1688 -0.8900 11 6 5.1419 5.3761 1.2494 12 7 7.1209 4.6550 -0.0006 13 6 7.6504 3.9621 -1.1953 14 6 8.9498 3.2545 -0.7683 15 6 9.1013 3.5637 0.7388 16 8 9.9731 4.6777 0.9413 17 6 9.6037 2.3537 1.4835 18 1 8.9997 1.9085 2.2603 19 6 10.8343 1.8149 1.1731 20 7 11.5694 2.3567 0.2267 21 14 11.4567 0.3146 2.0956 22 1 11.0172 -0.9169 1.3917 23 1 12.9402 0.3492 2.1533 24 1 10.9074 0.3188 3.4753 25 6 7.6537 3.9101 1.1688 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9877 0.9298 0.0005 32 1 3.1942 3.7252 -0.0004 33 1 5.5057 6.4037 1.2495 34 1 4.0520 5.3762 1.2494 35 1 5.5054 4.8623 2.1392 36 1 6.9270 3.2278 -1.5498 37 1 7.8632 4.6869 -1.9811 38 1 8.8650 2.1795 -0.9273 39 1 9.7982 3.6543 -1.3237 40 1 10.8733 4.5367 0.6175 41 1 12.4354 1.9778 0.0085 42 1 7.6568 4.5409 2.0577 43 1 7.0762 3.0021 1.3422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329273998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:53 Heat of formation + Delta-G solvation = -103.938479 kcal Electronic energy + Delta-G solvation = -25596.576016 eV Core-core repulsion = 21870.293593 eV Total energy + Delta-G solvation = -3726.282423 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 4.91 seconds Orbital eigenvalues (eV) -41.98558 -40.76311 -39.15407 -36.82045 -36.25103 -34.16246 -34.13847 -33.63302 -31.67557 -29.95175 -29.19321 -26.84619 -25.76821 -24.35919 -22.55984 -22.23790 -21.49142 -20.77166 -19.08148 -18.84793 -18.64809 -17.45301 -17.07724 -16.90582 -16.86175 -16.27309 -15.94215 -15.78834 -15.35164 -15.11667 -14.69203 -14.45814 -14.30483 -13.91154 -13.48398 -13.26857 -13.24523 -13.06692 -13.00651 -12.79343 -12.67473 -12.56245 -12.30557 -12.21202 -12.16024 -12.05717 -11.93793 -11.65951 -11.44229 -11.17426 -11.02330 -10.58042 -10.07009 -9.45457 -9.22368 -8.19422 -6.33576 0.80987 1.18913 1.38239 1.39321 1.49709 1.64251 2.38562 2.88767 3.03691 3.08245 3.50993 3.83006 3.92457 3.96501 4.11191 4.18388 4.24139 4.26134 4.42345 4.56697 4.68189 4.72535 4.84626 4.87356 4.90562 4.99159 5.04519 5.11540 5.25702 5.32119 5.34158 5.55063 5.58291 5.61643 5.64436 5.73388 5.89803 6.08519 6.25818 6.44923 6.70447 6.81578 7.27353 7.36787 7.50300 8.86260 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.017535 B = 0.004054 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.416801 B = 6905.828632 C = 7983.210686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C 0.509 3.491 4 O -0.579 6.579 5 N -0.527 5.527 6 N -0.519 5.519 7 C 0.482 3.518 8 O -0.552 6.552 9 C 0.062 3.938 10 H 0.140 0.860 11 C -0.137 4.137 12 N -0.485 5.485 13 C 0.042 3.958 14 C -0.108 4.108 15 C 0.241 3.759 16 O -0.590 6.590 17 C -0.555 4.555 18 H 0.046 0.954 19 C 0.028 3.972 20 N -0.912 5.912 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.277 1.277 24 H -0.273 1.273 25 C 0.055 3.945 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.435 0.565 32 H 0.436 0.564 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.043 0.957 40 H 0.370 0.630 41 H 0.268 0.732 42 H 0.060 0.940 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.297 -1.899 -2.354 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.171 4.171 3 C 0.298 3.702 4 O -0.457 6.457 5 N -0.275 5.275 6 N -0.269 5.269 7 C 0.268 3.732 8 O -0.428 6.428 9 C -0.053 4.053 10 H 0.157 0.843 11 C -0.194 4.194 12 N -0.207 5.207 13 C -0.086 4.086 14 C -0.147 4.147 15 C 0.201 3.799 16 O -0.397 6.397 17 C -0.593 4.593 18 H 0.064 0.936 19 C -0.173 4.173 20 N -0.552 5.552 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.202 1.202 24 H -0.198 1.198 25 C -0.072 4.072 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.277 0.723 32 H 0.279 0.721 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.500 -1.091 -2.178 19.651 hybrid contribution 1.075 -1.930 0.069 2.211 sum -18.425 -3.021 -2.109 18.789 Atomic orbital electron populations 1.21552 0.92445 1.03066 1.02262 1.21704 0.98596 0.89599 1.07184 1.21902 0.79420 0.94004 0.74853 1.90699 1.55421 1.47647 1.51938 1.45329 1.07696 0.98724 1.75729 1.45344 1.07006 0.98760 1.75797 1.22943 0.80384 0.94256 0.75602 1.90804 1.54800 1.47143 1.50078 1.22351 0.89368 0.89378 1.04158 0.84289 1.21830 1.01860 1.01643 0.94085 1.65192 1.04195 1.48370 1.02960 1.22868 0.96482 0.96185 0.93055 1.22544 0.95345 0.97735 0.99090 1.19526 0.86473 0.83400 0.90494 1.86119 1.25262 1.42674 1.85649 1.21809 1.03644 1.13499 1.20387 0.93597 1.25682 0.96585 0.99588 0.95405 1.69825 1.12320 1.42132 1.30892 0.85571 0.77508 0.79592 0.78996 1.20222 1.20246 1.19785 1.23235 0.94742 0.96418 0.92853 0.93068 0.89297 0.93145 0.86062 0.86196 0.72276 0.72063 0.89344 0.88899 0.93512 0.93174 0.90548 0.94912 0.93813 0.78132 0.92308 0.92147 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.95 16 2 C -0.13 -1.46 6.42 29.85 0.19 -1.27 16 3 C 0.51 10.10 7.95 87.66 0.70 10.80 16 4 O -0.58 -15.24 15.82 -3.03 -0.05 -15.29 16 5 N -0.53 -11.30 6.26 -173.53 -1.09 -12.39 16 6 N -0.52 -12.10 6.15 -173.53 -1.07 -13.17 16 7 C 0.48 14.09 6.16 87.66 0.54 14.62 16 8 O -0.55 -21.07 11.59 -3.03 -0.04 -21.10 16 9 C 0.06 1.67 2.85 44.17 0.13 1.80 16 10 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 11 C -0.14 -3.01 9.00 71.98 0.65 -2.36 16 12 N -0.48 -18.25 5.30 -862.22 -4.57 -22.82 16 13 C 0.04 1.67 6.00 86.45 0.52 2.19 16 14 C -0.11 -5.41 5.26 31.48 0.17 -5.24 16 15 C 0.24 12.73 0.95 -10.33 -0.01 12.72 16 16 O -0.59 -32.54 13.09 -148.98 -1.95 -34.49 16 17 C -0.55 -31.77 8.14 25.60 0.21 -31.56 16 18 H 0.05 2.66 7.78 -2.91 -0.02 2.64 16 19 C 0.03 1.53 5.28 84.65 0.45 1.97 16 20 N -0.91 -51.02 11.00 21.45 0.24 -50.78 16 21 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 C 0.05 2.47 4.26 86.65 0.37 2.84 16 26 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 27 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.43 8.96 8.00 -213.32 -1.71 7.25 16 32 H 0.44 8.63 7.42 -213.32 -1.58 7.05 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 1.42 7.56 -2.39 -0.02 1.40 16 35 H 0.05 1.22 7.00 -2.39 -0.02 1.20 16 36 H 0.05 1.96 5.65 -2.39 -0.01 1.95 16 37 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.03 1.77 7.84 -2.39 -0.02 1.75 16 39 H 0.04 2.27 7.98 -2.39 -0.02 2.26 16 40 H 0.37 20.78 7.46 -74.06 -0.55 20.23 16 41 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 42 H 0.06 2.74 7.67 -2.39 -0.02 2.72 16 43 H 0.07 3.24 5.06 -2.39 -0.01 3.23 16 Total: -1.00 -72.36 344.33 -4.72 -77.09 By element: Atomic # 1 Polarization: 44.09 SS G_CDS: -2.79 Total: 41.30 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.56 Total: 5.56 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -6.49 Total: -99.16 kcal Atomic # 8 Polarization: -68.85 SS G_CDS: -2.03 Total: -70.89 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -72.36 -4.72 -77.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329273998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.853 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.91 seconds