Wall clock time and date at job start Fri Apr 10 2020 17:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 H 1.09003 * 109.45754 * 30.00489 * 3 2 1 5 5 C 1.53037 * 109.46250 * 270.02514 * 3 2 1 6 6 C 1.53166 * 109.32882 * 178.60953 * 5 3 2 7 7 N 1.46924 * 108.76307 * 54.65166 * 6 5 3 8 8 C 1.34771 * 120.63179 * 126.36991 * 7 6 5 9 9 O 1.21589 * 120.00015 * 174.98392 * 8 7 6 10 10 N 1.34774 * 120.00366 * 354.98055 * 8 7 6 11 11 C 1.46496 * 120.00376 * 185.07362 * 10 8 7 12 12 C 1.50707 * 109.46916 * 180.02562 * 11 10 8 13 13 O 1.21291 * 120.00356 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99697 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00047 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99768 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00580 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99518 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00388 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47196 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46936 * 120.00208 * 19 17 15 22 22 H 1.48503 * 109.47305 * 240.00138 * 19 17 15 23 23 C 1.46932 * 118.73946 * 306.38416 * 7 6 5 24 24 H 1.08999 * 109.58956 * 173.39575 * 23 7 6 25 25 C 1.52992 * 109.58875 * 293.82753 * 23 7 6 26 26 C 1.53040 * 109.45871 * 149.97131 * 3 2 1 27 27 H 1.09000 * 109.47189 * 60.00153 * 1 2 3 28 28 H 1.09008 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47433 * 300.00025 * 1 2 3 30 30 H 1.09001 * 109.50174 * 298.58221 * 5 3 2 31 31 H 1.09005 * 109.49203 * 58.67794 * 5 3 2 32 32 H 1.08993 * 109.59321 * 294.86475 * 6 5 3 33 33 H 1.08999 * 109.70354 * 174.50146 * 6 5 3 34 34 H 0.97010 * 119.99545 * 5.07457 * 10 8 7 35 35 H 1.08991 * 109.47257 * 300.00091 * 11 10 8 36 36 H 1.09004 * 109.46857 * 60.00359 * 11 10 8 37 37 H 0.96996 * 120.00323 * 0.02562 * 14 12 11 38 38 H 0.96996 * 120.00075 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47453 * 179.28594 * 25 23 7 40 40 H 1.09001 * 109.47497 * 299.28807 * 25 23 7 41 41 H 1.09003 * 109.47607 * 59.28337 * 25 23 7 42 42 H 1.08997 * 109.49863 * 301.32868 * 26 3 2 43 43 H 1.09006 * 109.49723 * 61.38935 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9992 0.5140 5 6 2.2170 1.7715 -1.4429 6 6 2.8078 3.1847 -1.4395 7 7 4.0306 3.1837 -0.6249 8 6 5.1922 3.6444 -1.1295 9 8 6.1751 3.7236 -0.4182 10 7 5.2644 4.0173 -2.4227 11 6 6.5514 4.4124 -3.0003 12 6 6.3597 4.7812 -4.4489 13 8 5.2566 4.7205 -4.9494 14 7 7.4142 5.1785 -5.1883 15 6 7.2398 5.5146 -6.5060 16 1 6.2575 5.4605 -6.9516 17 6 8.3268 5.9247 -7.2682 18 7 9.5220 5.9910 -6.7258 19 14 8.0893 6.3819 -9.0637 20 1 6.6587 6.2242 -9.4296 21 1 8.5009 7.7931 -9.2738 22 1 8.9193 5.4922 -9.9151 23 6 3.9630 2.6706 0.7502 24 1 4.9661 2.6292 1.1746 25 6 3.0818 3.5900 1.5980 26 6 3.3588 1.2630 0.7221 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9018 1.0920 -1.9502 31 1 1.2593 1.7793 -1.9635 32 1 2.0859 3.8816 -1.0140 33 1 3.0484 3.4849 -2.4593 34 1 4.4641 4.0241 -2.9709 35 1 6.9457 5.2707 -2.4564 36 1 7.2532 3.5816 -2.9263 37 1 8.2965 5.2268 -4.7882 38 1 10.2807 6.2776 -7.2577 39 1 3.0226 3.2008 2.6145 40 1 3.5132 4.5909 1.6168 41 1 2.0816 3.6337 1.1670 42 1 3.2141 0.9088 1.7427 43 1 4.0328 0.5878 0.1948 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342599839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:30 Heat of formation + Delta-G solvation = -109.305769 kcal Electronic energy + Delta-G solvation = -24766.842761 eV Core-core repulsion = 21040.327594 eV Total energy + Delta-G solvation = -3726.515166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -40.64689 -38.94060 -38.13839 -36.67081 -34.55130 -33.82993 -32.39549 -31.89541 -31.34556 -28.37384 -27.33836 -26.62028 -24.59424 -24.11969 -22.74479 -21.02349 -19.67868 -18.97397 -18.40596 -17.89663 -16.94322 -16.27322 -15.67758 -15.56523 -15.33676 -15.30288 -14.65745 -14.53000 -14.38642 -14.15802 -14.00946 -13.70949 -13.38162 -13.09469 -12.93543 -12.63119 -12.25907 -12.13673 -11.92060 -11.88843 -11.62953 -11.54144 -11.33105 -11.24825 -11.14073 -10.50414 -10.40821 -10.32282 -9.98078 -9.76068 -9.64422 -8.94865 -8.62244 -8.47693 -8.09550 -6.51064 -3.93023 2.66243 3.10397 3.22601 3.28865 3.29418 3.50493 3.75653 3.96829 4.14653 4.45529 4.49061 4.75966 4.78307 4.88904 4.93215 5.00884 5.03215 5.10715 5.17735 5.20367 5.23260 5.35311 5.43465 5.44419 5.61845 5.67225 5.77254 5.80989 5.90422 5.95871 6.01899 6.09155 6.12258 6.51523 6.76430 6.91103 7.04350 7.46592 7.93121 8.15826 8.45630 8.77760 9.05157 9.40154 9.87895 10.65961 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002841 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.990922 B = 9855.020374 C =10560.292420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.090 3.910 4 H 0.065 0.935 5 C -0.156 4.156 6 C 0.112 3.888 7 N -0.628 5.628 8 C 0.710 3.290 9 O -0.595 6.595 10 N -0.725 5.725 11 C 0.127 3.873 12 C 0.429 3.571 13 O -0.599 6.599 14 N -0.549 5.549 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.894 5.894 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.159 3.841 24 H 0.108 0.892 25 C -0.164 4.164 26 C -0.126 4.126 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.406 0.594 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.014 -7.866 14.909 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.032 3.968 4 H 0.083 0.917 5 C -0.195 4.195 6 C -0.012 4.012 7 N -0.366 5.366 8 C 0.411 3.589 9 O -0.474 6.474 10 N -0.385 5.385 11 C -0.001 4.001 12 C 0.215 3.785 13 O -0.486 6.486 14 N -0.184 5.184 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.535 5.535 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.055 3.945 24 H 0.126 0.874 25 C -0.222 4.222 26 C -0.164 4.164 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.246 0.754 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.687 -7.945 14.951 22.414 hybrid contribution -0.135 0.501 -1.056 1.176 sum -14.822 -7.445 13.896 21.638 Atomic orbital electron populations 1.22782 0.81259 1.02672 0.99902 1.87930 1.19489 1.27918 1.95042 1.22155 0.94897 0.84458 0.95265 0.91740 1.22426 1.02148 0.97233 0.97696 1.21585 0.86856 0.96470 0.96304 1.47306 1.07991 1.67100 1.14173 1.15739 0.82928 0.78155 0.82050 1.90889 1.35466 1.61897 1.59134 1.44978 1.12267 1.71395 1.09813 1.20798 0.85035 1.01141 0.93165 1.19761 0.85895 0.85329 0.87509 1.90482 1.24932 1.60146 1.73013 1.41793 1.09043 1.56804 1.10764 1.19772 0.96615 1.41692 0.85263 0.87648 1.25329 0.94632 0.97062 1.00747 1.69625 0.99446 1.46759 1.37642 0.85758 0.78744 0.78069 0.81514 1.19146 1.20625 1.20615 1.20970 1.01333 0.91194 0.81044 0.87428 1.22193 0.99916 1.00507 0.99601 1.22027 0.95663 0.97275 1.01439 0.94015 0.89736 0.94135 0.90261 0.90559 0.91260 0.89326 0.75405 0.89935 0.90074 0.77004 0.91641 0.91384 0.91850 0.92469 0.90067 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.86 10.35 -35.23 -0.36 -4.22 16 3 C 0.09 0.82 2.37 -26.69 -0.06 0.75 16 4 H 0.06 0.50 6.15 -51.93 -0.32 0.18 16 5 C -0.16 -1.50 5.69 -26.63 -0.15 -1.65 16 6 C 0.11 1.17 6.02 -3.73 -0.02 1.15 16 7 N -0.63 -8.08 2.68 -170.93 -0.46 -8.54 16 8 C 0.71 11.94 8.30 -86.93 -0.72 11.22 16 9 O -0.59 -11.77 15.79 5.29 0.08 -11.68 16 10 N -0.72 -12.60 5.44 -66.42 -0.36 -12.96 16 11 C 0.13 2.41 6.16 -5.19 -0.03 2.38 16 12 C 0.43 9.91 7.85 -10.98 -0.09 9.82 16 13 O -0.60 -15.31 15.24 5.55 0.08 -15.22 16 14 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 16 15 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 16 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.89 -23.96 13.05 55.50 0.72 -23.23 16 19 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.16 1.72 3.19 -67.60 -0.22 1.51 16 24 H 0.11 1.35 7.03 -51.93 -0.37 0.99 16 25 C -0.16 -1.42 9.02 37.15 0.34 -1.08 16 26 C -0.13 -1.21 5.20 -26.61 -0.14 -1.35 16 27 H 0.04 0.26 7.84 -51.93 -0.41 -0.15 16 28 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 32 H 0.07 0.61 7.48 -51.93 -0.39 0.22 16 33 H 0.09 1.01 5.56 -51.93 -0.29 0.72 16 34 H 0.41 6.88 4.89 -40.82 -0.20 6.68 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.40 9.51 7.90 -40.82 -0.32 9.18 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.44 5.72 -51.93 -0.30 0.14 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -32.01 347.62 -6.69 -38.70 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.31 Total: 13.94 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -0.24 Total: 16.21 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.15 Total: -58.47 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.20 Total: -31.13 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.01 -6.69 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342599839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.605 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds