Wall clock time and date at job start Fri Apr 10 2020 17:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00091 * 2 1 4 4 H 1.09003 * 109.45754 * 30.00489 * 3 2 1 5 5 C 1.53037 * 109.46250 * 270.02514 * 3 2 1 6 6 C 1.53166 * 109.32882 * 178.60953 * 5 3 2 7 7 N 1.46924 * 108.76307 * 54.65166 * 6 5 3 8 8 C 1.34771 * 120.63179 * 126.36991 * 7 6 5 9 9 O 1.21589 * 120.00015 * 174.98392 * 8 7 6 10 10 N 1.34774 * 120.00366 * 354.98055 * 8 7 6 11 11 C 1.46496 * 120.00376 * 185.07362 * 10 8 7 12 12 C 1.50707 * 109.46916 * 180.02562 * 11 10 8 13 13 O 1.21291 * 120.00356 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99697 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00047 * 180.02562 * 14 12 11 16 16 H 1.08001 * 119.99768 * 359.97438 * 15 14 12 17 17 C 1.38949 * 120.00580 * 179.97438 * 15 14 12 18 18 N 1.31415 * 119.99518 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00388 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47196 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46936 * 120.00208 * 19 17 15 22 22 H 1.48503 * 109.47305 * 240.00138 * 19 17 15 23 23 C 1.46932 * 118.73946 * 306.38416 * 7 6 5 24 24 H 1.08999 * 109.58956 * 173.39575 * 23 7 6 25 25 C 1.52992 * 109.58875 * 293.82753 * 23 7 6 26 26 C 1.53040 * 109.45871 * 149.97131 * 3 2 1 27 27 H 1.09000 * 109.47189 * 60.00153 * 1 2 3 28 28 H 1.09008 * 109.47379 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47433 * 300.00025 * 1 2 3 30 30 H 1.09001 * 109.50174 * 298.58221 * 5 3 2 31 31 H 1.09005 * 109.49203 * 58.67794 * 5 3 2 32 32 H 1.08993 * 109.59321 * 294.86475 * 6 5 3 33 33 H 1.08999 * 109.70354 * 174.50146 * 6 5 3 34 34 H 0.97010 * 119.99545 * 5.07457 * 10 8 7 35 35 H 1.08991 * 109.47257 * 300.00091 * 11 10 8 36 36 H 1.09004 * 109.46857 * 60.00359 * 11 10 8 37 37 H 0.96996 * 120.00323 * 0.02562 * 14 12 11 38 38 H 0.96996 * 120.00075 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47453 * 179.28594 * 25 23 7 40 40 H 1.09001 * 109.47497 * 299.28807 * 25 23 7 41 41 H 1.09003 * 109.47607 * 59.28337 * 25 23 7 42 42 H 1.08997 * 109.49863 * 301.32868 * 26 3 2 43 43 H 1.09006 * 109.49723 * 61.38935 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9992 0.5140 5 6 2.2170 1.7715 -1.4429 6 6 2.8078 3.1847 -1.4395 7 7 4.0306 3.1837 -0.6249 8 6 5.1922 3.6444 -1.1295 9 8 6.1751 3.7236 -0.4182 10 7 5.2644 4.0173 -2.4227 11 6 6.5514 4.4124 -3.0003 12 6 6.3597 4.7812 -4.4489 13 8 5.2566 4.7205 -4.9494 14 7 7.4142 5.1785 -5.1883 15 6 7.2398 5.5146 -6.5060 16 1 6.2575 5.4605 -6.9516 17 6 8.3268 5.9247 -7.2682 18 7 9.5220 5.9910 -6.7258 19 14 8.0893 6.3819 -9.0637 20 1 6.6587 6.2242 -9.4296 21 1 8.5009 7.7931 -9.2738 22 1 8.9193 5.4922 -9.9151 23 6 3.9630 2.6706 0.7502 24 1 4.9661 2.6292 1.1746 25 6 3.0818 3.5900 1.5980 26 6 3.3588 1.2630 0.7221 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9018 1.0920 -1.9502 31 1 1.2593 1.7793 -1.9635 32 1 2.0859 3.8816 -1.0140 33 1 3.0484 3.4849 -2.4593 34 1 4.4641 4.0241 -2.9709 35 1 6.9457 5.2707 -2.4564 36 1 7.2532 3.5816 -2.9263 37 1 8.2965 5.2268 -4.7882 38 1 10.2807 6.2776 -7.2577 39 1 3.0226 3.2008 2.6145 40 1 3.5132 4.5909 1.6168 41 1 2.0816 3.6337 1.1670 42 1 3.2141 0.9088 1.7427 43 1 4.0328 0.5878 0.1948 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342599839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:29 Heat of formation + Delta-G solvation = -132.660794 kcal Electronic energy + Delta-G solvation = -24767.855511 eV Core-core repulsion = 21040.327594 eV Total energy + Delta-G solvation = -3727.527916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77239 -40.33785 -39.53600 -37.61983 -36.28555 -35.48396 -33.53284 -33.23983 -32.75669 -29.40079 -28.70048 -27.20275 -26.41322 -25.04886 -23.60587 -22.16031 -21.38638 -20.36011 -19.91886 -19.30052 -17.80077 -17.46644 -17.22945 -16.94823 -16.62807 -16.15829 -16.11736 -15.83120 -15.74876 -15.38235 -15.21535 -14.94082 -14.37769 -14.23384 -13.90323 -13.77249 -13.55552 -13.46901 -13.34431 -12.92681 -12.91118 -12.65495 -12.44707 -12.30210 -12.11026 -12.08541 -11.98701 -11.58366 -11.31625 -11.24300 -10.56789 -10.47332 -10.33268 -10.10042 -9.59360 -8.51346 -6.01592 1.34994 1.41859 1.48449 1.58253 1.88418 2.05066 2.27594 2.76717 2.81460 3.13508 3.15897 3.65965 3.71560 3.94790 4.06079 4.15005 4.19495 4.32342 4.39835 4.40877 4.44802 4.46723 4.52689 4.58326 4.62314 4.69245 4.88563 4.91237 4.96293 4.99730 5.05582 5.13260 5.29569 5.38500 5.38696 5.55692 5.86731 5.91958 6.29570 6.47316 6.86583 7.03052 7.40293 7.48218 7.93503 8.65915 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.002841 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.990922 B = 9855.020374 C =10560.292420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.093 3.907 4 H 0.088 0.912 5 C -0.152 4.152 6 C 0.109 3.891 7 N -0.621 5.621 8 C 0.706 3.294 9 O -0.629 6.629 10 N -0.726 5.726 11 C 0.140 3.860 12 C 0.435 3.565 13 O -0.624 6.624 14 N -0.559 5.559 15 C -0.336 4.336 16 H 0.087 0.913 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.271 1.271 23 C 0.154 3.846 24 H 0.085 0.915 25 C -0.156 4.156 26 C -0.120 4.120 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 -7.913 15.467 24.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C 0.036 3.964 4 H 0.105 0.895 5 C -0.190 4.190 6 C -0.014 4.014 7 N -0.358 5.358 8 C 0.408 3.592 9 O -0.511 6.511 10 N -0.386 5.386 11 C 0.012 3.988 12 C 0.222 3.778 13 O -0.512 6.512 14 N -0.194 5.194 15 C -0.465 4.465 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.197 1.197 23 C 0.051 3.949 24 H 0.104 0.896 25 C -0.214 4.214 26 C -0.158 4.158 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.400 -8.012 15.538 23.971 hybrid contribution 0.324 0.455 -1.164 1.291 sum -16.076 -7.557 14.374 22.851 Atomic orbital electron populations 1.22980 0.79633 1.03673 1.00982 1.87905 1.21349 1.28286 1.95132 1.22132 0.94797 0.84829 0.94672 0.89467 1.22384 1.02324 0.95882 0.98436 1.21769 0.86224 0.97815 0.95570 1.47427 1.07481 1.65741 1.15152 1.15877 0.83698 0.78177 0.81488 1.90860 1.37038 1.63402 1.59755 1.44920 1.11668 1.71820 1.10236 1.20596 0.86179 1.01781 0.90289 1.20370 0.85019 0.83651 0.88801 1.90457 1.25866 1.60767 1.74093 1.41838 1.09576 1.57514 1.10503 1.19774 0.96350 1.43771 0.86589 0.89527 1.26148 0.94092 0.96319 1.04648 1.69690 1.00015 1.46793 1.39179 0.84799 0.78519 0.78166 0.76418 1.19351 1.19629 1.19660 1.21134 1.01051 0.92603 0.80092 0.89641 1.22143 0.99828 0.99045 1.00402 1.21956 0.95677 0.95764 1.02420 0.93309 0.88949 0.92608 0.92584 0.88699 0.88585 0.90482 0.75110 0.89065 0.89197 0.76705 0.91065 0.89178 0.93260 0.90823 0.88206 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.41 -7.32 10.35 -148.98 -1.54 -8.86 16 3 C 0.09 1.48 2.37 30.62 0.07 1.55 16 4 H 0.09 1.00 6.15 -2.39 -0.01 0.99 16 5 C -0.15 -2.67 5.69 30.66 0.17 -2.50 16 6 C 0.11 2.13 6.02 86.35 0.52 2.65 16 7 N -0.62 -15.61 2.68 -812.96 -2.18 -17.79 16 8 C 0.71 23.85 8.30 179.06 1.49 25.34 16 9 O -0.63 -25.21 15.79 -4.00 -0.06 -25.27 16 10 N -0.73 -25.38 5.44 -482.31 -2.62 -28.00 16 11 C 0.14 5.35 6.16 85.64 0.53 5.88 16 12 C 0.43 20.36 7.85 87.66 0.69 21.05 16 13 O -0.62 -32.38 15.24 -3.06 -0.05 -32.43 16 14 N -0.56 -28.35 5.29 -306.98 -1.62 -29.98 16 15 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 16 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 18 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 19 Si 1.00 41.82 29.55 68.60 2.03 43.85 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 23 C 0.15 3.20 3.19 44.97 0.14 3.35 16 24 H 0.09 2.17 7.03 -2.39 -0.02 2.16 16 25 C -0.16 -2.32 9.02 71.98 0.65 -1.67 16 26 C -0.12 -2.14 5.20 30.67 0.16 -1.98 16 27 H 0.05 0.47 7.84 -2.39 -0.02 0.45 16 28 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.45 8.08 -2.39 -0.02 0.43 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.33 7.84 -2.38 -0.02 1.31 16 32 H 0.10 1.41 7.48 -2.39 -0.02 1.39 16 33 H 0.08 1.71 5.56 -2.39 -0.01 1.70 16 34 H 0.41 13.91 4.89 -92.70 -0.45 13.46 16 35 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 37 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 38 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.85 5.72 -2.39 -0.01 0.84 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -69.16 347.62 1.02 -68.14 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -0.14 Total: 41.77 kcal Atomic # 6 Polarization: 30.33 SS G_CDS: 6.93 Total: 37.26 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -6.14 Total: -124.46 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: -1.65 Total: -66.56 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -69.16 1.02 -68.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342599839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.519 kcal (2) G-P(sol) polarization free energy of solvation -69.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds