Wall clock time and date at job start Fri Apr 10 2020 17:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.66942 * 2 1 4 4 O 1.21275 * 119.99972 * 119.99926 * 3 2 1 5 5 N 1.34769 * 119.99891 * 300.00141 * 3 2 1 6 6 C 1.46508 * 119.99928 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47067 * 180.02562 * 6 5 3 8 8 H 1.08999 * 109.47246 * 65.00161 * 7 6 5 9 9 C 1.53006 * 109.46746 * 185.00217 * 7 6 5 10 10 O 1.42894 * 109.47313 * 55.00024 * 9 7 6 11 11 N 1.46502 * 109.47167 * 304.99838 * 7 6 5 12 12 C 1.36930 * 120.00159 * 155.00288 * 11 7 6 13 13 H 1.08000 * 119.99841 * 0.02562 * 12 11 7 14 14 C 1.38810 * 120.00182 * 179.97438 * 12 11 7 15 15 N 1.31622 * 119.99887 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99941 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00122 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00115 * 16 14 12 20 20 C 1.53343 * 109.67787 * 120.49974 * 2 1 3 21 21 C 1.52896 * 108.68992 * 52.28811 * 20 2 1 22 22 N 1.45749 * 110.52248 * 50.66820 * 21 20 2 23 23 C 1.33359 * 124.10690 * 340.98801 * 22 21 20 24 24 O 1.21279 * 118.24299 * 182.21809 * 23 22 21 25 25 C 1.50174 * 123.50866 * 2.19927 * 23 22 21 26 26 H 1.09005 * 109.47306 * 60.00064 * 1 2 3 27 27 H 1.09006 * 109.46729 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47596 * 299.99501 * 1 2 3 29 29 H 0.97004 * 120.00749 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.46779 * 60.00147 * 6 5 3 31 31 H 1.09001 * 109.47103 * 299.99834 * 6 5 3 32 32 H 1.09000 * 109.46771 * 175.00094 * 9 7 6 33 33 H 1.08996 * 109.46623 * 294.99396 * 9 7 6 34 34 H 0.96700 * 114.00300 * 180.02562 * 10 9 7 35 35 H 0.97008 * 119.99482 * 335.00344 * 11 7 6 36 36 H 0.96993 * 120.00105 * 359.97438 * 15 14 12 37 37 H 1.08996 * 109.60887 * 171.99690 * 20 2 1 38 38 H 1.09004 * 109.60011 * 292.48766 * 20 2 1 39 39 H 1.09005 * 109.25048 * 290.36786 * 21 20 2 40 40 H 1.08994 * 109.14787 * 170.90733 * 21 20 2 41 41 H 0.97000 * 117.94641 * 160.96408 * 22 21 20 42 42 H 1.09003 * 109.40106 * 222.29070 * 25 23 22 43 43 H 1.08999 * 109.32784 * 102.50072 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.7358 1.8134 0.9096 5 7 1.7145 2.2501 -1.0108 6 6 2.2072 3.6298 -1.0105 7 6 1.6992 4.3530 -2.2594 8 1 0.6132 4.4346 -2.2156 9 6 2.3137 5.7527 -2.3236 10 8 3.7378 5.6510 -2.2637 11 7 2.0842 3.5955 -3.4529 12 6 1.3569 3.7189 -4.6064 13 1 0.4996 4.3751 -4.6366 14 6 1.7220 3.0016 -5.7373 15 7 2.7671 2.2024 -5.7007 16 14 0.7293 3.1695 -7.3108 17 1 1.2884 4.2722 -8.1335 18 1 -0.6851 3.4714 -6.9739 19 1 0.7955 1.8985 -8.0759 20 6 2.0463 -0.7328 1.2441 21 6 1.3771 -2.1056 1.3171 22 7 1.5043 -2.8044 0.0444 23 6 1.7816 -2.2042 -1.1138 24 8 1.8227 -2.8843 -2.1171 25 6 2.0454 -0.7314 -1.2420 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.1560 1.9347 -1.7385 30 1 3.2972 3.6264 -1.0102 31 1 1.8452 4.1447 -0.1205 32 1 2.0228 6.2347 -3.2569 33 1 1.9560 6.3454 -1.4817 34 1 4.1948 6.5024 -2.2992 35 1 2.8545 3.0064 -3.4258 36 1 3.2824 2.1149 -4.8836 37 1 3.1269 -0.8570 1.1733 38 1 1.7996 -0.1572 2.1363 39 1 0.3208 -1.9783 1.5543 40 1 1.8538 -2.6945 2.1007 41 1 1.3798 -3.7664 0.0396 42 1 1.5354 -0.3479 -2.1258 43 1 3.1178 -0.5643 -1.3417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486007289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:30 Heat of formation + Delta-G solvation = -118.089074 kcal Electronic energy + Delta-G solvation = -25663.175145 eV Core-core repulsion = 21936.279106 eV Total energy + Delta-G solvation = -3726.896039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.03136 -39.26632 -37.38235 -36.56526 -35.05151 -34.10045 -33.57698 -31.35668 -29.79173 -28.22255 -27.89138 -25.70060 -24.48381 -23.50852 -22.62334 -20.34369 -20.01491 -18.47377 -17.80392 -17.52917 -16.75086 -16.57533 -16.41286 -15.79734 -15.49195 -14.99738 -14.87068 -14.58281 -14.15859 -13.72977 -13.66366 -13.50254 -13.40379 -13.32091 -12.97575 -12.76097 -12.24782 -11.89957 -11.85583 -11.55068 -11.51066 -11.12002 -11.03141 -10.84793 -10.74241 -10.45651 -10.16756 -10.05292 -9.55843 -9.37749 -9.21969 -9.19772 -8.98873 -8.71540 -7.11622 -6.13679 -3.16313 2.61410 2.78275 3.16544 3.37469 3.49139 3.53323 3.68044 4.31545 4.46620 4.51043 4.60850 4.62906 4.83221 4.92799 4.96985 5.12892 5.25898 5.31044 5.41148 5.50472 5.53315 5.55109 5.59372 5.68800 5.78940 5.84750 5.90081 5.92287 5.93555 6.05287 6.24281 6.37625 6.62058 6.65651 6.77601 7.19769 7.72900 7.80169 8.10370 8.15803 8.43076 8.71597 9.15216 10.02057 10.17125 11.33663 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.005072 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.918951 B = 5519.232629 C = 7124.791020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C 0.522 3.478 4 O -0.549 6.549 5 N -0.710 5.710 6 C 0.117 3.883 7 C 0.171 3.829 8 H 0.066 0.934 9 C 0.060 3.940 10 O -0.562 6.562 11 N -0.724 5.724 12 C -0.342 4.342 13 H 0.064 0.936 14 C -0.038 4.038 15 N -0.936 5.936 16 Si 1.080 2.920 17 H -0.296 1.296 18 H -0.295 1.295 19 H -0.287 1.287 20 C -0.112 4.112 21 C 0.110 3.890 22 N -0.723 5.723 23 C 0.527 3.473 24 O -0.549 6.549 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.409 0.591 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.027 0.973 34 H 0.365 0.635 35 H 0.371 0.629 36 H 0.258 0.742 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.398 0.602 42 H 0.113 0.887 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.037 -3.042 15.999 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C 0.307 3.693 4 O -0.427 6.427 5 N -0.361 5.361 6 C -0.008 4.008 7 C 0.060 3.940 8 H 0.084 0.916 9 C -0.022 4.022 10 O -0.366 6.366 11 N -0.367 5.367 12 C -0.473 4.473 13 H 0.082 0.918 14 C -0.237 4.237 15 N -0.580 5.580 16 Si 0.911 3.089 17 H -0.224 1.224 18 H -0.222 1.222 19 H -0.213 1.213 20 C -0.150 4.150 21 C -0.014 4.014 22 N -0.376 5.376 23 C 0.314 3.686 24 O -0.427 6.427 25 C -0.166 4.166 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.245 0.755 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.210 0.790 35 H 0.205 0.795 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.233 0.767 42 H 0.132 0.868 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.965 -3.873 14.518 15.824 hybrid contribution 0.184 0.787 1.219 1.463 sum -4.781 -3.086 15.737 16.734 Atomic orbital electron populations 1.21976 0.91943 1.03167 1.03299 1.20890 0.97766 0.93061 0.96708 1.20190 0.80298 0.86710 0.82104 1.90668 1.38338 1.77287 1.36407 1.46027 1.52747 1.12580 1.24723 1.21584 1.00305 0.80991 0.97893 1.20523 0.96937 0.89656 0.86879 0.91593 1.23021 0.81097 0.99578 0.98495 1.86544 1.18951 1.33845 1.97220 1.42362 1.34642 1.51742 1.07924 1.20012 1.10091 1.26154 0.91050 0.91789 1.25730 0.99994 0.96776 1.01163 1.70841 1.18478 1.38752 1.29904 0.83232 0.74175 0.76102 0.75352 1.22398 1.22171 1.21324 1.21730 1.01327 0.94051 0.97859 1.21440 1.01103 0.93679 0.85219 1.45487 1.72699 1.11645 1.07781 1.19999 0.75478 0.90508 0.82628 1.90799 1.51540 1.65016 1.35305 1.21773 1.04870 0.91016 0.98942 0.91288 0.91204 0.91462 0.75457 0.90638 0.91996 0.93252 0.95454 0.79029 0.79481 0.93084 0.90240 0.88766 0.91228 0.90307 0.76668 0.86843 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.72 37.16 0.29 -1.20 16 2 C -0.08 -0.96 0.63 -155.44 -0.10 -1.06 16 3 C 0.52 7.95 6.47 -10.99 -0.07 7.88 16 4 O -0.55 -9.86 15.90 5.56 0.09 -9.77 16 5 N -0.71 -11.29 5.20 -60.29 -0.31 -11.60 16 6 C 0.12 1.98 5.12 -4.04 -0.02 1.96 16 7 C 0.17 3.18 2.84 -67.93 -0.19 2.98 16 8 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 9 C 0.06 1.02 6.86 37.16 0.25 1.27 16 10 O -0.56 -9.85 12.64 -35.23 -0.45 -10.29 16 11 N -0.72 -16.82 4.51 -53.42 -0.24 -17.06 16 12 C -0.34 -8.99 9.93 -15.06 -0.15 -9.14 16 13 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 14 C -0.04 -1.05 5.50 -17.43 -0.10 -1.15 16 15 N -0.94 -28.31 13.70 55.49 0.76 -27.54 16 16 Si 1.08 25.33 29.92 -169.99 -5.09 20.25 16 17 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.11 -1.10 4.34 -26.61 -0.12 -1.22 16 21 C 0.11 0.81 6.38 -4.50 -0.03 0.78 16 22 N -0.72 -7.18 5.24 -61.41 -0.32 -7.50 16 23 C 0.53 7.42 7.15 -11.87 -0.08 7.34 16 24 O -0.55 -10.27 17.78 5.56 0.10 -10.17 16 25 C -0.13 -1.74 4.64 -28.10 -0.13 -1.87 16 26 H 0.07 0.75 7.58 -51.93 -0.39 0.35 16 27 H 0.07 0.64 5.90 -51.93 -0.31 0.34 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.41 6.66 7.30 -40.82 -0.30 6.36 16 30 H 0.08 1.46 7.40 -51.93 -0.38 1.07 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.36 4.60 9.12 45.56 0.42 5.02 16 35 H 0.37 9.37 6.63 -40.82 -0.27 9.10 16 36 H 0.26 7.76 6.77 -40.82 -0.28 7.48 16 37 H 0.08 0.87 8.12 -51.93 -0.42 0.44 16 38 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 39 H 0.07 0.42 6.87 -51.93 -0.36 0.07 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.40 3.43 8.80 -40.82 -0.36 3.07 16 42 H 0.11 1.72 7.91 -51.93 -0.41 1.31 16 43 H 0.11 1.54 8.09 -51.93 -0.42 1.12 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -35.16 348.78 -6.28 -41.44 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -5.63 Total: 20.42 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.45 Total: 6.58 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.12 Total: -63.71 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.26 Total: -30.24 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.09 Total: 20.25 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.16 -6.28 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486007289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.649 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds