Wall clock time and date at job start Fri Apr 10 2020 17:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.66942 * 2 1 4 4 O 1.21275 * 119.99972 * 119.99926 * 3 2 1 5 5 N 1.34769 * 119.99891 * 300.00141 * 3 2 1 6 6 C 1.46508 * 119.99928 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47067 * 180.02562 * 6 5 3 8 8 H 1.08999 * 109.47246 * 65.00161 * 7 6 5 9 9 C 1.53006 * 109.46746 * 185.00217 * 7 6 5 10 10 O 1.42894 * 109.47313 * 55.00024 * 9 7 6 11 11 N 1.46502 * 109.47167 * 304.99838 * 7 6 5 12 12 C 1.36930 * 120.00159 * 155.00288 * 11 7 6 13 13 H 1.08000 * 119.99841 * 0.02562 * 12 11 7 14 14 C 1.38810 * 120.00182 * 179.97438 * 12 11 7 15 15 N 1.31622 * 119.99887 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99941 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00122 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00115 * 16 14 12 20 20 C 1.53343 * 109.67787 * 120.49974 * 2 1 3 21 21 C 1.52896 * 108.68992 * 52.28811 * 20 2 1 22 22 N 1.45749 * 110.52248 * 50.66820 * 21 20 2 23 23 C 1.33359 * 124.10690 * 340.98801 * 22 21 20 24 24 O 1.21279 * 118.24299 * 182.21809 * 23 22 21 25 25 C 1.50174 * 123.50866 * 2.19927 * 23 22 21 26 26 H 1.09005 * 109.47306 * 60.00064 * 1 2 3 27 27 H 1.09006 * 109.46729 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47596 * 299.99501 * 1 2 3 29 29 H 0.97004 * 120.00749 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.46779 * 60.00147 * 6 5 3 31 31 H 1.09001 * 109.47103 * 299.99834 * 6 5 3 32 32 H 1.09000 * 109.46771 * 175.00094 * 9 7 6 33 33 H 1.08996 * 109.46623 * 294.99396 * 9 7 6 34 34 H 0.96700 * 114.00300 * 180.02562 * 10 9 7 35 35 H 0.97008 * 119.99482 * 335.00344 * 11 7 6 36 36 H 0.96993 * 120.00105 * 359.97438 * 15 14 12 37 37 H 1.08996 * 109.60887 * 171.99690 * 20 2 1 38 38 H 1.09004 * 109.60011 * 292.48766 * 20 2 1 39 39 H 1.09005 * 109.25048 * 290.36786 * 21 20 2 40 40 H 1.08994 * 109.14787 * 170.90733 * 21 20 2 41 41 H 0.97000 * 117.94641 * 160.96408 * 22 21 20 42 42 H 1.09003 * 109.40106 * 222.29070 * 25 23 22 43 43 H 1.08999 * 109.32784 * 102.50072 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0372 1.4191 0.0000 4 8 2.7358 1.8134 0.9096 5 7 1.7145 2.2501 -1.0108 6 6 2.2072 3.6298 -1.0105 7 6 1.6992 4.3530 -2.2594 8 1 0.6132 4.4346 -2.2156 9 6 2.3137 5.7527 -2.3236 10 8 3.7378 5.6510 -2.2637 11 7 2.0842 3.5955 -3.4529 12 6 1.3569 3.7189 -4.6064 13 1 0.4996 4.3751 -4.6366 14 6 1.7220 3.0016 -5.7373 15 7 2.7671 2.2024 -5.7007 16 14 0.7293 3.1695 -7.3108 17 1 1.2884 4.2722 -8.1335 18 1 -0.6851 3.4714 -6.9739 19 1 0.7955 1.8985 -8.0759 20 6 2.0463 -0.7328 1.2441 21 6 1.3771 -2.1056 1.3171 22 7 1.5043 -2.8044 0.0444 23 6 1.7816 -2.2042 -1.1138 24 8 1.8227 -2.8843 -2.1171 25 6 2.0454 -0.7314 -1.2420 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.1560 1.9347 -1.7385 30 1 3.2972 3.6264 -1.0102 31 1 1.8452 4.1447 -0.1205 32 1 2.0228 6.2347 -3.2569 33 1 1.9560 6.3454 -1.4817 34 1 4.1948 6.5024 -2.2992 35 1 2.8545 3.0064 -3.4258 36 1 3.2824 2.1149 -4.8836 37 1 3.1269 -0.8570 1.1733 38 1 1.7996 -0.1572 2.1363 39 1 0.3208 -1.9783 1.5543 40 1 1.8538 -2.6945 2.1007 41 1 1.3798 -3.7664 0.0396 42 1 1.5354 -0.3479 -2.1258 43 1 3.1178 -0.5643 -1.3417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486007289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:28 Heat of formation + Delta-G solvation = -149.090497 kcal Electronic energy + Delta-G solvation = -25664.519467 eV Core-core repulsion = 21936.279106 eV Total energy + Delta-G solvation = -3728.240362 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -42.11176 -40.51247 -38.82883 -37.70326 -36.55299 -35.50666 -34.85969 -33.04075 -30.78810 -29.85985 -28.90954 -26.99182 -25.62891 -25.31276 -23.72558 -21.82323 -21.24817 -19.58235 -19.41303 -18.75314 -18.25125 -17.65219 -17.59826 -17.04733 -16.63706 -16.35817 -16.12703 -15.84087 -15.65593 -15.45877 -15.04027 -14.86494 -14.61082 -14.48915 -14.28502 -13.69771 -13.41758 -13.12389 -13.03576 -12.78766 -12.68999 -12.56427 -12.51607 -12.11029 -12.03397 -11.89971 -11.86962 -11.41342 -11.28023 -11.00183 -10.78840 -10.59419 -10.10418 -10.07127 -9.10553 -8.31988 -5.27827 1.47030 1.54774 1.60107 1.69756 1.83436 2.15736 2.25347 2.73345 3.34547 3.41500 3.46120 3.51563 3.59353 3.67114 3.74601 3.90746 3.99244 4.12064 4.33850 4.35071 4.46937 4.48412 4.53684 4.55293 4.66304 4.74606 4.77794 4.86824 4.91479 4.97446 5.07822 5.14292 5.25171 5.42870 5.64599 5.82269 6.21935 6.49746 6.53506 6.96820 7.11240 7.13256 7.15277 8.00870 8.15259 9.18644 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.005072 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.918951 B = 5519.232629 C = 7124.791020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C 0.521 3.479 4 O -0.575 6.575 5 N -0.711 5.711 6 C 0.128 3.872 7 C 0.165 3.835 8 H 0.077 0.923 9 C 0.065 3.935 10 O -0.585 6.585 11 N -0.733 5.733 12 C -0.324 4.324 13 H 0.073 0.927 14 C -0.101 4.101 15 N -0.976 5.976 16 Si 1.125 2.875 17 H -0.291 1.291 18 H -0.268 1.268 19 H -0.301 1.301 20 C -0.110 4.110 21 C 0.110 3.890 22 N -0.704 5.704 23 C 0.529 3.471 24 O -0.604 6.604 25 C -0.124 4.124 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.407 0.593 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.386 0.614 35 H 0.358 0.642 36 H 0.243 0.757 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.409 0.591 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 -2.638 18.217 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C 0.308 3.692 4 O -0.455 6.455 5 N -0.361 5.361 6 C 0.004 3.996 7 C 0.056 3.944 8 H 0.095 0.905 9 C -0.016 4.016 10 O -0.392 6.392 11 N -0.375 5.375 12 C -0.455 4.455 13 H 0.091 0.909 14 C -0.293 4.293 15 N -0.624 5.624 16 Si 0.951 3.049 17 H -0.218 1.218 18 H -0.193 1.193 19 H -0.228 1.228 20 C -0.149 4.149 21 C -0.013 4.013 22 N -0.355 5.355 23 C 0.316 3.684 24 O -0.486 6.486 25 C -0.164 4.164 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.243 0.757 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.234 0.766 35 H 0.190 0.810 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.246 0.754 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.885 -3.414 16.837 18.508 hybrid contribution 0.797 0.758 0.684 1.295 sum -6.089 -2.655 17.521 18.738 Atomic orbital electron populations 1.21984 0.90046 1.04226 1.03736 1.20884 0.99141 0.90625 0.96774 1.20744 0.79502 0.87733 0.81224 1.90650 1.39411 1.78068 1.37344 1.46054 1.52690 1.12494 1.24900 1.21392 0.98722 0.81690 0.97806 1.20795 0.97698 0.90287 0.85586 0.90477 1.22857 0.81022 0.98337 0.99378 1.86500 1.19377 1.36036 1.97258 1.42478 1.33935 1.52332 1.08739 1.20344 1.09461 1.24101 0.91601 0.90940 1.26987 1.00612 0.97164 1.04526 1.70962 1.20468 1.41540 1.29410 0.82649 0.74515 0.75426 0.72304 1.21791 1.19254 1.22811 1.21768 1.00779 0.95434 0.96871 1.21726 1.02903 0.92337 0.84304 1.45409 1.70323 1.12341 1.07462 1.19917 0.75295 0.90103 0.83112 1.90773 1.54448 1.65906 1.37489 1.21654 1.03740 0.91693 0.99302 0.92314 0.89793 0.89607 0.75685 0.93169 0.90005 0.94839 0.91396 0.76571 0.81045 0.94653 0.91570 0.87635 0.88492 0.86869 0.75422 0.88942 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.72 71.98 0.56 -2.04 16 2 C -0.07 -1.63 0.63 -52.79 -0.03 -1.66 16 3 C 0.52 15.70 6.47 87.66 0.57 16.27 16 4 O -0.57 -20.31 15.90 -3.01 -0.05 -20.36 16 5 N -0.71 -22.65 5.20 -463.06 -2.41 -25.05 16 6 C 0.13 4.30 5.12 86.38 0.44 4.74 16 7 C 0.17 5.98 2.84 44.99 0.13 6.11 16 8 H 0.08 2.63 8.08 -2.39 -0.02 2.62 16 9 C 0.06 2.10 6.86 71.98 0.49 2.59 16 10 O -0.58 -19.95 12.64 -148.98 -1.88 -21.84 16 11 N -0.73 -34.43 4.51 -322.94 -1.46 -35.88 16 12 C -0.32 -16.99 9.93 84.03 0.83 -16.15 16 13 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 14 C -0.10 -5.71 5.50 84.86 0.47 -5.24 16 15 N -0.98 -61.04 13.70 21.65 0.30 -60.74 16 16 Si 1.12 51.33 29.92 68.60 2.05 53.39 16 17 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 20 C -0.11 -1.93 4.34 30.67 0.13 -1.80 16 21 C 0.11 1.21 6.38 86.49 0.55 1.76 16 22 N -0.70 -12.52 5.24 -467.37 -2.45 -14.97 16 23 C 0.53 14.93 7.15 87.71 0.63 15.56 16 24 O -0.60 -23.32 17.78 -3.03 -0.05 -23.38 16 25 C -0.12 -3.53 4.64 29.71 0.14 -3.39 16 26 H 0.06 1.21 7.58 -2.38 -0.02 1.19 16 27 H 0.08 1.30 5.90 -2.38 -0.01 1.29 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.41 13.48 7.30 -92.71 -0.68 12.80 16 30 H 0.05 1.95 7.40 -2.39 -0.02 1.94 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.39 9.21 9.12 -74.06 -0.68 8.53 16 35 H 0.36 18.72 6.63 -92.70 -0.61 18.11 16 36 H 0.24 15.35 6.77 -92.71 -0.63 14.72 16 37 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 38 H 0.11 1.69 7.90 -2.38 -0.02 1.67 16 39 H 0.10 0.69 6.87 -2.38 -0.02 0.67 16 40 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.41 6.09 8.80 -92.71 -0.82 5.27 16 42 H 0.09 3.01 7.91 -2.39 -0.02 2.99 16 43 H 0.09 2.83 8.09 -2.39 -0.02 2.82 16 Total: -1.00 -78.76 348.78 -2.61 -81.38 By element: Atomic # 1 Polarization: 52.29 SS G_CDS: -1.57 Total: 50.72 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 4.90 Total: 16.74 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -6.02 Total: -136.65 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -1.98 Total: -65.57 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.39 kcal Total: -78.76 -2.61 -81.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486007289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.715 kcal (2) G-P(sol) polarization free energy of solvation -78.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds