Wall clock time and date at job start Fri Apr 10 2020 17:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 C 1.53002 * 109.47222 * 119.99369 * 2 1 3 5 5 H 1.08998 * 109.47069 * 301.68646 * 4 2 1 6 6 N 1.46497 * 109.47253 * 181.68008 * 4 2 1 7 7 C 1.34775 * 119.99799 * 85.00089 * 6 4 2 8 8 N 1.34782 * 119.99953 * 179.97438 * 7 6 4 9 9 O 1.21582 * 120.00278 * 0.02562 * 7 6 4 10 10 C 1.50705 * 109.46865 * 61.68231 * 4 2 1 11 11 O 1.21282 * 119.99919 * 80.13579 * 10 4 2 12 12 N 1.34782 * 119.99776 * 260.13923 * 10 4 2 13 13 C 1.47021 * 125.64754 * 4.33743 * 12 10 4 14 14 C 1.54334 * 107.26421 * 178.85395 * 13 12 10 15 15 C 1.55159 * 103.01892 * 338.13456 * 14 13 12 16 16 O 1.42894 * 111.00867 * 277.23415 * 15 14 13 17 17 C 1.50707 * 111.03422 * 153.39450 * 15 14 13 18 18 H 1.07997 * 120.00094 * 247.78416 * 17 15 14 19 19 C 1.37876 * 119.99834 * 67.79352 * 17 15 14 20 20 N 1.31519 * 120.00202 * 359.97438 * 19 17 15 21 21 Si 1.86792 * 120.00105 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.47158 * 89.99683 * 21 19 17 23 23 H 1.48496 * 109.47416 * 209.99448 * 21 19 17 24 24 H 1.48503 * 109.47318 * 329.99795 * 21 19 17 25 25 C 1.47423 * 125.64775 * 184.64696 * 12 10 4 26 26 H 1.08995 * 109.47463 * 295.04945 * 1 2 3 27 27 H 1.09000 * 109.46785 * 55.05461 * 1 2 3 28 28 H 1.09007 * 109.46716 * 175.04877 * 1 2 3 29 29 H 1.08996 * 109.47898 * 239.99652 * 2 1 3 30 30 H 1.08998 * 109.47013 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46658 * 299.99686 * 3 2 1 32 32 H 1.08996 * 109.47100 * 59.99163 * 3 2 1 33 33 H 0.96998 * 119.99987 * 265.00243 * 6 4 2 34 34 H 0.96998 * 119.99834 * 0.02562 * 8 7 6 35 35 H 0.96994 * 119.99930 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.87954 * 298.39395 * 13 12 10 37 37 H 1.08994 * 109.88786 * 59.56023 * 13 12 10 38 38 H 1.08995 * 110.85036 * 219.67428 * 14 13 12 39 39 H 1.09001 * 110.52211 * 96.44885 * 14 13 12 40 40 H 0.96700 * 114.00361 * 292.19942 * 16 15 14 41 41 H 0.96999 * 120.00396 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.36560 * 322.92891 * 25 12 10 43 43 H 1.08999 * 110.36385 * 85.13881 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6522 -0.2250 2.1390 6 7 3.5044 -0.6861 1.2698 7 6 4.1459 0.3826 1.7824 8 7 5.4932 0.4146 1.8017 9 8 3.5092 1.3175 2.2284 10 6 1.5720 -2.1535 1.2288 11 8 2.1592 -2.9737 0.5554 12 7 0.5009 -2.5230 1.9586 13 6 -0.3535 -1.6203 2.7439 14 6 -1.4640 -2.4810 3.3826 15 6 -1.5009 -3.7363 2.4714 16 8 -2.2895 -3.4988 1.3037 17 6 -2.0074 -4.9382 3.2266 18 1 -1.3417 -5.7610 3.4412 19 6 -3.3208 -4.9873 3.6432 20 7 -4.1314 -3.9851 3.3822 21 14 -3.9488 -6.4772 4.5786 22 1 -3.7543 -6.2652 6.0355 23 1 -5.3940 -6.6669 4.2947 24 1 -3.1975 -7.6840 4.1493 25 6 -0.0042 -3.9000 2.1069 26 1 -0.3634 0.4351 0.9309 27 1 -0.3633 0.5887 -0.8424 28 1 -0.3633 -1.0239 -0.0887 29 1 1.8935 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 4.0124 -1.4321 0.9143 34 1 6.0011 -0.3314 1.4463 35 1 5.9548 1.1839 2.1703 36 1 0.2360 -1.1355 3.5221 37 1 -0.7984 -0.8695 2.0910 38 1 -2.4208 -1.9595 3.3593 39 1 -1.1968 -2.7533 4.4037 40 1 -3.2336 -3.3898 1.4822 41 1 -5.0553 -4.0194 3.6756 42 1 0.1004 -4.4455 1.1690 43 1 0.5285 -4.4154 2.9061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643609017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:38 Heat of formation + Delta-G solvation = -120.133905 kcal Electronic energy + Delta-G solvation = -26089.384009 eV Core-core repulsion = 22362.399299 eV Total energy + Delta-G solvation = -3726.984710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63014 -39.29582 -37.43185 -35.86807 -34.40646 -33.97974 -32.68852 -32.17089 -30.03311 -28.59868 -27.21400 -26.68565 -24.90343 -22.40863 -21.36895 -20.61736 -19.67741 -19.22976 -18.30231 -17.38686 -17.22803 -16.46143 -15.89979 -15.43128 -15.08340 -15.02485 -14.87706 -14.25790 -14.19068 -13.60095 -13.37117 -13.06844 -12.88718 -12.52689 -12.24059 -12.08575 -11.97327 -11.74226 -11.48174 -11.35836 -11.29540 -10.95356 -10.88041 -10.73748 -10.56458 -10.52003 -10.27327 -10.06385 -9.76865 -9.55167 -9.45828 -8.99822 -8.71784 -8.24436 -8.05873 -6.33432 -4.41307 2.53915 2.99249 3.13485 3.17225 3.25333 3.29045 3.54834 4.23227 4.38508 4.68838 4.89598 4.94977 5.02589 5.32713 5.43045 5.51801 5.67885 5.73008 5.81365 5.83605 5.95217 6.01274 6.09869 6.16772 6.18707 6.35192 6.37870 6.48004 6.50171 6.55524 6.61305 6.78652 6.83547 6.91481 7.26730 7.28750 7.69956 7.86018 7.93726 8.01666 8.44821 8.53550 8.60941 9.27868 9.44174 10.74240 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.027627 B = 0.003865 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.267151 B = 7242.251020 C = 7518.711406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 C -0.132 4.132 4 C 0.154 3.846 5 H 0.106 0.894 6 N -0.728 5.728 7 C 0.709 3.291 8 N -0.869 5.869 9 O -0.589 6.589 10 C 0.523 3.477 11 O -0.554 6.554 12 N -0.596 5.596 13 C 0.088 3.912 14 C -0.139 4.139 15 C 0.251 3.749 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.118 3.882 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.404 0.596 34 H 0.397 0.603 35 H 0.414 0.586 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.386 0.614 41 H 0.270 0.730 42 H 0.072 0.928 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 8.654 -2.884 15.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.117 4.117 3 C -0.190 4.190 4 C 0.045 3.955 5 H 0.124 0.876 6 N -0.385 5.385 7 C 0.407 3.593 8 N -0.437 5.437 9 O -0.467 6.467 10 C 0.310 3.690 11 O -0.433 6.433 12 N -0.328 5.328 13 C -0.035 4.035 14 C -0.177 4.177 15 C 0.210 3.790 16 O -0.394 6.394 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.129 4.129 20 N -0.537 5.537 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.003 4.003 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.239 0.761 34 H 0.224 0.776 35 H 0.246 0.754 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.238 0.762 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.401 8.955 -3.192 15.626 hybrid contribution -0.258 -1.089 0.734 1.338 sum 12.144 7.866 -2.458 14.676 Atomic orbital electron populations 1.21999 0.93762 1.03099 1.02328 1.21429 0.96661 0.96902 0.96715 1.21833 1.00810 0.94622 1.01698 1.20811 0.79801 0.93575 1.01281 0.87608 1.44830 1.06361 1.21109 1.66208 1.15819 0.82130 0.82827 0.78540 1.42963 1.05381 1.25560 1.69812 1.90976 1.65708 1.36722 1.53286 1.20025 0.80254 0.89469 0.79261 1.90653 1.56931 1.53707 1.41973 1.48554 1.27211 1.10733 1.46277 1.22443 0.92863 0.93856 0.94333 1.23214 0.96581 0.98208 0.99729 1.19550 0.85426 0.91396 0.82656 1.86091 1.24406 1.94789 1.34074 1.21476 0.96309 1.03805 1.35907 0.91659 1.24982 0.96509 0.96432 0.95015 1.69557 1.06342 1.30907 1.46852 0.86397 0.78044 0.82584 0.79848 1.20448 1.20991 1.19681 1.22436 0.95216 0.81394 1.01267 0.91887 0.92045 0.91468 0.90621 0.93037 0.93351 0.91493 0.76097 0.77573 0.75419 0.92678 0.91218 0.89717 0.91393 0.76192 0.92025 0.90905 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 7.63 37.16 0.28 -1.88 16 2 C -0.10 -1.34 2.67 -90.62 -0.24 -1.59 16 3 C -0.13 -1.72 7.70 37.16 0.29 -1.43 16 4 C 0.15 2.31 1.94 -69.08 -0.13 2.18 16 5 H 0.11 1.66 6.25 -51.93 -0.32 1.34 16 6 N -0.73 -9.34 4.93 -59.81 -0.29 -9.64 16 7 C 0.71 8.89 7.13 -86.91 -0.62 8.27 16 8 N -0.87 -6.85 8.88 27.63 0.25 -6.60 16 9 O -0.59 -9.40 14.30 5.29 0.08 -9.32 16 10 C 0.52 9.44 5.88 -10.98 -0.06 9.37 16 11 O -0.55 -11.23 16.58 5.56 0.09 -11.14 16 12 N -0.60 -11.36 3.17 -170.51 -0.54 -11.90 16 13 C 0.09 1.56 5.84 -3.06 -0.02 1.54 16 14 C -0.14 -2.89 5.64 -24.89 -0.14 -3.03 16 15 C 0.25 5.85 0.89 -89.62 -0.08 5.77 16 16 O -0.58 -14.46 13.18 -35.23 -0.46 -14.92 16 17 C -0.54 -13.59 8.25 -34.44 -0.28 -13.88 16 18 H 0.07 1.65 7.77 -52.49 -0.41 1.24 16 19 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 20 N -0.90 -22.56 10.79 55.43 0.60 -21.96 16 21 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 C 0.12 2.55 6.10 -2.53 -0.02 2.54 16 26 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.11 7.17 -51.93 -0.37 0.74 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.68 5.83 -51.93 -0.30 0.38 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.94 7.41 -51.93 -0.39 0.56 16 33 H 0.40 4.73 8.05 -40.82 -0.33 4.40 16 34 H 0.40 2.07 8.84 -40.82 -0.36 1.71 16 35 H 0.41 2.69 8.93 -40.82 -0.36 2.32 16 36 H 0.05 0.88 7.75 -51.93 -0.40 0.48 16 37 H 0.07 1.17 5.08 -51.93 -0.26 0.91 16 38 H 0.08 1.85 7.85 -51.93 -0.41 1.44 16 39 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 40 H 0.39 9.71 6.93 45.56 0.32 10.03 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.07 1.67 7.99 -51.93 -0.42 1.26 16 43 H 0.07 1.50 8.02 -51.93 -0.42 1.08 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -29.43 338.85 -6.92 -36.35 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -5.60 Total: 19.65 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -1.12 Total: 9.61 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.01 Total: -50.10 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.30 Total: -35.38 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.43 -6.92 -36.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643609017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.779 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds