Wall clock time and date at job start Fri Apr 10 2020 17:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 C 1.53002 * 109.47222 * 119.99369 * 2 1 3 5 5 H 1.08998 * 109.47069 * 301.68646 * 4 2 1 6 6 N 1.46497 * 109.47253 * 181.68008 * 4 2 1 7 7 C 1.34775 * 119.99799 * 85.00089 * 6 4 2 8 8 N 1.34782 * 119.99953 * 179.97438 * 7 6 4 9 9 O 1.21582 * 120.00278 * 0.02562 * 7 6 4 10 10 C 1.50705 * 109.46865 * 61.68231 * 4 2 1 11 11 O 1.21282 * 119.99919 * 80.13579 * 10 4 2 12 12 N 1.34782 * 119.99776 * 260.13923 * 10 4 2 13 13 C 1.47021 * 125.64754 * 4.33743 * 12 10 4 14 14 C 1.54334 * 107.26421 * 178.85395 * 13 12 10 15 15 C 1.55159 * 103.01892 * 338.13456 * 14 13 12 16 16 O 1.42894 * 111.00867 * 277.23415 * 15 14 13 17 17 C 1.50707 * 111.03422 * 153.39450 * 15 14 13 18 18 H 1.07997 * 120.00094 * 247.78416 * 17 15 14 19 19 C 1.37876 * 119.99834 * 67.79352 * 17 15 14 20 20 N 1.31519 * 120.00202 * 359.97438 * 19 17 15 21 21 Si 1.86792 * 120.00105 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.47158 * 89.99683 * 21 19 17 23 23 H 1.48496 * 109.47416 * 209.99448 * 21 19 17 24 24 H 1.48503 * 109.47318 * 329.99795 * 21 19 17 25 25 C 1.47423 * 125.64775 * 184.64696 * 12 10 4 26 26 H 1.08995 * 109.47463 * 295.04945 * 1 2 3 27 27 H 1.09000 * 109.46785 * 55.05461 * 1 2 3 28 28 H 1.09007 * 109.46716 * 175.04877 * 1 2 3 29 29 H 1.08996 * 109.47898 * 239.99652 * 2 1 3 30 30 H 1.08998 * 109.47013 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.46658 * 299.99686 * 3 2 1 32 32 H 1.08996 * 109.47100 * 59.99163 * 3 2 1 33 33 H 0.96998 * 119.99987 * 265.00243 * 6 4 2 34 34 H 0.96998 * 119.99834 * 0.02562 * 8 7 6 35 35 H 0.96994 * 119.99930 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.87954 * 298.39395 * 13 12 10 37 37 H 1.08994 * 109.88786 * 59.56023 * 13 12 10 38 38 H 1.08995 * 110.85036 * 219.67428 * 14 13 12 39 39 H 1.09001 * 110.52211 * 96.44885 * 14 13 12 40 40 H 0.96700 * 114.00361 * 292.19942 * 16 15 14 41 41 H 0.96999 * 120.00396 * 180.02562 * 20 19 17 42 42 H 1.08999 * 110.36560 * 322.92891 * 25 12 10 43 43 H 1.08999 * 110.36385 * 85.13881 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6522 -0.2250 2.1390 6 7 3.5044 -0.6861 1.2698 7 6 4.1459 0.3826 1.7824 8 7 5.4932 0.4146 1.8017 9 8 3.5092 1.3175 2.2284 10 6 1.5720 -2.1535 1.2288 11 8 2.1592 -2.9737 0.5554 12 7 0.5009 -2.5230 1.9586 13 6 -0.3535 -1.6203 2.7439 14 6 -1.4640 -2.4810 3.3826 15 6 -1.5009 -3.7363 2.4714 16 8 -2.2895 -3.4988 1.3037 17 6 -2.0074 -4.9382 3.2266 18 1 -1.3417 -5.7610 3.4412 19 6 -3.3208 -4.9873 3.6432 20 7 -4.1314 -3.9851 3.3822 21 14 -3.9488 -6.4772 4.5786 22 1 -3.7543 -6.2652 6.0355 23 1 -5.3940 -6.6669 4.2947 24 1 -3.1975 -7.6840 4.1493 25 6 -0.0042 -3.9000 2.1069 26 1 -0.3634 0.4351 0.9309 27 1 -0.3633 0.5887 -0.8424 28 1 -0.3633 -1.0239 -0.0887 29 1 1.8935 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9564 0.8899 33 1 4.0124 -1.4321 0.9143 34 1 6.0011 -0.3314 1.4463 35 1 5.9548 1.1839 2.1703 36 1 0.2360 -1.1355 3.5221 37 1 -0.7984 -0.8695 2.0910 38 1 -2.4208 -1.9595 3.3593 39 1 -1.1968 -2.7533 4.4037 40 1 -3.2336 -3.3898 1.4822 41 1 -5.0553 -4.0194 3.6756 42 1 0.1004 -4.4455 1.1690 43 1 0.5285 -4.4154 2.9061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643609017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:35 Heat of formation + Delta-G solvation = -144.913806 kcal Electronic energy + Delta-G solvation = -26090.458546 eV Core-core repulsion = 22362.399299 eV Total energy + Delta-G solvation = -3728.059247 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 3.03 seconds Orbital eigenvalues (eV) -41.87362 -40.59273 -39.04750 -37.08278 -36.14092 -34.97029 -34.11630 -33.64518 -31.70111 -30.20730 -28.59196 -27.82250 -26.62549 -23.97261 -22.35913 -21.99118 -21.29726 -20.48375 -19.47473 -19.09648 -18.38189 -17.82447 -17.17548 -16.93200 -16.65598 -16.34719 -16.17378 -15.88869 -15.30214 -15.12739 -14.84071 -14.52131 -14.25479 -13.93817 -13.64726 -13.54171 -13.47449 -13.21504 -13.16707 -12.91382 -12.65039 -12.50197 -12.43376 -12.27164 -12.05595 -11.93409 -11.74588 -11.35642 -11.28225 -10.98283 -10.63538 -10.60873 -10.16429 -10.04467 -9.61731 -8.24177 -6.38587 1.28983 1.43046 1.46613 1.54839 1.68361 2.11614 2.26518 2.41086 3.00614 3.31464 3.58342 3.76117 3.81598 3.87070 4.01533 4.21172 4.24852 4.30442 4.37170 4.59675 4.60145 4.67071 4.78493 4.86494 4.93912 4.97097 5.11305 5.14910 5.20822 5.24927 5.36143 5.44656 5.46242 5.52450 5.78381 5.82630 6.05680 6.05828 6.50553 6.65022 6.95647 7.02172 7.32968 7.47425 7.63634 8.82041 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.027627 B = 0.003865 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.267151 B = 7242.251020 C = 7518.711406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.121 4.121 4 C 0.165 3.835 5 H 0.103 0.897 6 N -0.726 5.726 7 C 0.706 3.294 8 N -0.846 5.846 9 O -0.623 6.623 10 C 0.524 3.476 11 O -0.578 6.578 12 N -0.599 5.599 13 C 0.095 3.905 14 C -0.129 4.129 15 C 0.237 3.763 16 O -0.592 6.592 17 C -0.562 4.562 18 H 0.058 0.942 19 C 0.037 3.963 20 N -0.909 5.909 21 Si 0.960 3.040 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.275 1.275 25 C 0.124 3.876 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.410 0.590 34 H 0.412 0.588 35 H 0.424 0.576 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.381 0.619 41 H 0.272 0.728 42 H 0.051 0.949 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.371 9.630 -2.628 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.178 4.178 4 C 0.055 3.945 5 H 0.121 0.879 6 N -0.383 5.383 7 C 0.404 3.596 8 N -0.416 5.416 9 O -0.503 6.503 10 C 0.312 3.688 11 O -0.458 6.458 12 N -0.330 5.330 13 C -0.027 4.027 14 C -0.168 4.168 15 C 0.197 3.803 16 O -0.402 6.402 17 C -0.600 4.600 18 H 0.076 0.924 19 C -0.164 4.164 20 N -0.549 5.549 21 Si 0.786 3.214 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.200 1.200 25 C 0.002 3.998 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.246 0.754 34 H 0.243 0.757 35 H 0.257 0.743 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.485 9.937 -2.939 17.007 hybrid contribution -0.539 -1.418 0.617 1.638 sum 12.946 8.519 -2.322 15.671 Atomic orbital electron populations 1.21958 0.93858 1.01577 1.03415 1.21408 0.96497 0.97447 0.95877 1.21715 1.00516 0.93602 1.01989 1.20646 0.81183 0.90910 1.01747 0.87893 1.44728 1.05473 1.21639 1.66496 1.15947 0.83245 0.82130 0.78230 1.42753 1.03763 1.26409 1.68650 1.90959 1.66809 1.37816 1.54765 1.20584 0.79413 0.90587 0.78187 1.90637 1.57580 1.54791 1.42836 1.48561 1.27785 1.09794 1.46889 1.22427 0.92157 0.93156 0.94914 1.23006 0.97195 0.97405 0.99200 1.19719 0.85902 0.92103 0.82593 1.86082 1.24176 1.94891 1.35091 1.21720 0.96885 1.04559 1.36842 0.92405 1.25594 0.96569 0.98627 0.95630 1.69620 1.06481 1.31816 1.46959 0.85524 0.77354 0.79640 0.78883 1.19840 1.20700 1.20030 1.22204 0.94543 0.82858 1.00200 0.91407 0.90261 0.94312 0.90978 0.93312 0.91656 0.92507 0.75385 0.75744 0.74255 0.90123 0.90047 0.90876 0.91738 0.76739 0.91815 0.93035 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 7.63 71.98 0.55 -3.47 16 2 C -0.09 -2.41 2.67 -10.79 -0.03 -2.44 16 3 C -0.12 -2.88 7.70 71.98 0.55 -2.32 16 4 C 0.16 4.71 1.94 44.25 0.09 4.80 16 5 H 0.10 3.06 6.25 -2.39 -0.01 3.04 16 6 N -0.73 -17.40 4.93 -461.41 -2.27 -19.67 16 7 C 0.71 16.29 7.13 179.05 1.28 17.57 16 8 N -0.85 -11.19 8.88 -184.74 -1.64 -12.83 16 9 O -0.62 -18.77 14.30 -3.97 -0.06 -18.83 16 10 C 0.52 18.59 5.88 87.66 0.52 19.10 16 11 O -0.58 -23.32 16.58 -3.03 -0.05 -23.37 16 12 N -0.60 -22.62 3.17 -811.77 -2.57 -25.20 16 13 C 0.10 3.29 5.84 86.73 0.51 3.80 16 14 C -0.13 -5.37 5.64 31.79 0.18 -5.19 16 15 C 0.24 11.23 0.89 -10.15 -0.01 11.22 16 16 O -0.59 -29.95 13.18 -148.98 -1.96 -31.92 16 17 C -0.56 -28.81 8.25 25.60 0.21 -28.60 16 18 H 0.06 2.97 7.77 -2.91 -0.02 2.94 16 19 C 0.04 1.85 5.30 84.65 0.45 2.29 16 20 N -0.91 -45.78 10.79 21.45 0.23 -45.55 16 21 Si 0.96 40.44 29.54 68.60 2.03 42.47 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 C 0.12 5.45 6.10 86.86 0.53 5.98 16 26 H 0.07 1.73 6.56 -2.39 -0.02 1.71 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.04 1.26 7.17 -2.38 -0.02 1.24 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.19 5.83 -2.39 -0.01 1.17 16 31 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.06 1.49 7.41 -2.39 -0.02 1.47 16 33 H 0.41 8.91 8.05 -92.71 -0.75 8.16 16 34 H 0.41 3.16 8.84 -92.71 -0.82 2.34 16 35 H 0.42 4.39 8.93 -92.71 -0.83 3.56 16 36 H 0.08 2.41 7.75 -2.39 -0.02 2.39 16 37 H 0.08 2.64 5.08 -2.39 -0.01 2.63 16 38 H 0.07 3.19 7.85 -2.39 -0.02 3.17 16 39 H 0.06 2.68 8.03 -2.39 -0.02 2.66 16 40 H 0.38 19.61 6.93 -74.06 -0.51 19.10 16 41 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 42 H 0.05 2.44 7.99 -2.39 -0.02 2.42 16 43 H 0.08 3.21 8.02 -2.39 -0.02 3.19 16 Total: -1.00 -62.71 338.85 -3.30 -66.01 By element: Atomic # 1 Polarization: 47.97 SS G_CDS: -1.82 Total: 46.15 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 4.82 Total: 22.74 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -6.25 Total: -103.25 kcal Atomic # 8 Polarization: -72.05 SS G_CDS: -2.07 Total: -74.12 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -62.71 -3.30 -66.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643609017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.902 kcal (2) G-P(sol) polarization free energy of solvation -62.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.03 seconds