Wall clock time and date at job start Fri Apr 10 2020 17:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48504 * 109.47077 * 239.99991 * 3 2 1 5 5 H 1.48500 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47339 * 119.99835 * 3 2 1 7 7 C 1.38816 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00271 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47836 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46941 * 305.00435 * 11 10 9 13 13 O 1.42903 * 109.46865 * 65.00109 * 11 10 9 14 14 C 1.52993 * 109.47675 * 185.00218 * 11 10 9 15 15 N 1.46502 * 109.47511 * 180.02562 * 14 11 10 16 16 C 1.34775 * 119.99787 * 180.02562 * 15 14 11 17 17 O 1.21275 * 120.00468 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99515 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.46768 * 179.97438 * 18 16 15 20 20 H 1.08998 * 109.13181 * 55.52161 * 19 18 16 21 21 C 1.52927 * 109.29578 * 174.99836 * 19 18 16 22 22 C 1.53348 * 108.67100 * 171.06249 * 21 19 18 23 23 C 1.53077 * 108.41700 * 292.45922 * 22 21 19 24 24 C 1.50171 * 109.89019 * 48.90804 * 23 22 21 25 25 O 1.21283 * 118.24346 * 162.39572 * 24 23 22 26 26 N 1.33354 * 123.51221 * 342.42859 * 24 23 22 27 27 H 0.96993 * 120.00079 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00490 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46876 * 60.00069 * 10 9 7 30 30 H 1.09005 * 109.47336 * 300.00320 * 10 9 7 31 31 H 0.96700 * 114.00110 * 59.99897 * 13 11 10 32 32 H 1.08997 * 109.47125 * 59.99633 * 14 11 10 33 33 H 1.09008 * 109.47113 * 300.00111 * 14 11 10 34 34 H 0.96996 * 119.99771 * 359.97438 * 15 14 11 35 35 H 1.09004 * 109.46870 * 59.99651 * 18 16 15 36 36 H 1.08991 * 109.46829 * 299.99736 * 18 16 15 37 37 H 1.08996 * 109.60496 * 290.82065 * 21 19 18 38 38 H 1.08997 * 109.60247 * 51.30926 * 21 19 18 39 39 H 1.08997 * 109.67264 * 52.20642 * 22 21 19 40 40 H 1.09000 * 109.67050 * 172.73216 * 22 21 19 41 41 H 1.09003 * 109.39570 * 288.78247 * 23 22 21 42 42 H 1.08998 * 109.40837 * 169.04268 * 23 22 21 43 43 H 0.97002 * 117.94938 * 182.22122 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0639 -4.8198 0.0012 12 1 0.3800 -4.7127 0.8433 13 8 0.3212 -4.8121 -1.2196 14 6 1.8247 -6.1411 0.1269 15 7 0.8728 -7.2547 0.1269 16 6 1.3188 -8.5225 0.2292 17 8 2.5081 -8.7414 0.3208 18 6 0.3394 -9.6679 0.2298 19 6 1.1003 -10.9893 0.3555 20 1 1.7264 -10.9576 1.2472 21 6 0.0996 -12.1388 0.4812 22 6 0.8612 -13.4660 0.3805 23 6 1.4071 -13.6036 -1.0429 24 6 2.1098 -12.3389 -1.4451 25 8 2.8696 -12.3799 -2.3896 26 7 1.9436 -11.1732 -0.8190 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.6847 -3.7145 0.8906 30 1 2.6848 -3.7146 -0.8894 31 1 0.8669 -4.9036 -2.0127 32 1 2.3913 -6.1470 1.0581 33 1 2.5086 -6.2482 -0.7151 34 1 -0.0784 -7.0796 0.0541 35 1 -0.2269 -9.6622 -0.7016 36 1 -0.3446 -9.5607 1.0716 37 1 -0.4063 -12.0796 1.4448 38 1 -0.6329 -12.0756 -0.3235 39 1 1.6865 -13.4703 1.0924 40 1 0.1857 -14.2939 0.5962 41 1 0.5825 -13.7939 -1.7300 42 1 2.1092 -14.4363 -1.0827 43 1 2.4131 -10.3991 -1.1673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667852762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:42 Heat of formation + Delta-G solvation = -129.939650 kcal Electronic energy + Delta-G solvation = -23881.771552 eV Core-core repulsion = 20154.361633 eV Total energy + Delta-G solvation = -3727.409919 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88952 -39.68878 -37.80778 -36.91562 -34.51630 -34.06328 -33.56061 -31.80690 -31.29219 -29.41246 -27.92006 -25.43428 -23.83889 -22.88389 -22.36642 -21.50931 -20.43386 -19.50777 -17.65692 -17.46339 -17.17621 -16.63191 -16.46273 -15.97385 -15.76260 -15.39861 -14.90687 -14.54003 -14.47454 -14.26174 -14.09199 -13.80407 -13.50861 -13.38375 -13.07055 -12.89117 -12.46018 -12.29380 -12.00920 -11.89232 -11.71064 -11.49513 -11.46231 -11.00139 -10.82945 -10.69509 -10.26277 -10.20618 -9.97019 -9.84559 -9.55663 -9.31920 -9.23211 -8.93704 -6.98358 -5.79762 -3.09727 2.38028 2.42990 2.93094 3.04783 3.42067 3.46376 3.47495 4.03980 4.14748 4.20739 4.36026 4.50327 4.56506 4.63525 4.70607 4.76138 4.82907 4.97916 5.05049 5.11228 5.16527 5.28354 5.39370 5.41687 5.46455 5.51694 5.55860 5.70915 5.72282 5.88065 6.13145 6.25676 6.45675 6.61138 6.61491 7.15975 7.30140 7.64659 7.85036 7.97677 8.04229 8.38303 9.49934 10.05764 10.41411 11.42493 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.043171 B = 0.002147 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.421297 B =13038.904619 C =13281.287487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.105 0.895 13 O -0.553 6.553 14 C 0.088 3.912 15 N -0.718 5.718 16 C 0.507 3.493 17 O -0.543 6.543 18 C -0.158 4.158 19 C 0.156 3.844 20 H 0.084 0.916 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.136 4.136 24 C 0.516 3.484 25 O -0.562 6.562 26 N -0.708 5.708 27 H 0.256 0.744 28 H 0.388 0.612 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.374 0.626 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.406 0.594 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -27.612 2.647 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.123 0.877 13 O -0.358 6.358 14 C -0.037 4.037 15 N -0.369 5.369 16 C 0.293 3.707 17 O -0.421 6.421 18 C -0.198 4.198 19 C 0.051 3.949 20 H 0.102 0.898 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.176 4.176 24 C 0.303 3.697 25 O -0.441 6.441 26 N -0.362 5.362 27 H 0.066 0.934 28 H 0.223 0.777 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.221 0.779 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.241 0.759 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.926 -27.758 2.729 28.045 hybrid contribution 0.325 1.455 -0.396 1.542 sum -2.600 -26.303 2.333 26.534 Atomic orbital electron populations 1.69661 1.05118 1.25856 1.57209 1.24769 0.95552 0.97771 1.02747 0.86242 0.78509 0.83374 0.77883 1.21216 1.21627 1.21212 1.19172 0.90983 0.84091 1.43395 0.91241 1.42227 1.06044 0.99391 1.89400 1.21200 0.93505 0.86592 0.98887 1.22400 0.94578 0.91842 0.88265 0.87717 1.86573 1.37555 1.96242 1.15440 1.22130 0.92262 0.85986 1.03278 1.45950 1.11357 1.05639 1.73979 1.20625 0.89686 0.84131 0.76230 1.90729 1.17008 1.84651 1.49745 1.22162 0.98889 0.92887 1.05879 1.20708 0.91681 0.93091 0.89463 0.89761 1.21974 0.97690 0.93646 1.03856 1.21657 1.00597 0.97716 0.96159 1.21661 1.01770 0.95952 0.98221 1.20200 0.81824 0.85415 0.82293 1.90771 1.38056 1.85926 1.29393 1.45687 1.48371 1.11734 1.30365 0.93389 0.77735 0.95381 0.95909 0.77928 0.90326 0.90985 0.75851 0.87942 0.87040 0.89398 0.90537 0.90899 0.90251 0.88284 0.88240 0.75574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.84 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.11 5.55 -59.91 -0.33 -18.44 16 10 C 0.13 2.39 5.90 -4.04 -0.02 2.37 16 11 C 0.09 1.28 3.09 -26.74 -0.08 1.20 16 12 H 0.11 1.56 8.14 -51.92 -0.42 1.14 16 13 O -0.55 -8.22 13.03 -35.23 -0.46 -8.68 16 14 C 0.09 1.05 5.34 -4.04 -0.02 1.03 16 15 N -0.72 -6.98 5.45 -60.29 -0.33 -7.31 16 16 C 0.51 5.03 7.47 -10.98 -0.08 4.95 16 17 O -0.54 -7.43 14.49 5.56 0.08 -7.35 16 18 C -0.16 -0.91 5.35 -27.88 -0.15 -1.06 16 19 C 0.16 1.03 2.65 -68.37 -0.18 0.84 16 20 H 0.08 0.63 7.96 -51.93 -0.41 0.21 16 21 C -0.13 -0.51 5.30 -26.59 -0.14 -0.65 16 22 C -0.12 -0.51 6.03 -26.51 -0.16 -0.67 16 23 C -0.14 -0.88 6.03 -28.10 -0.17 -1.05 16 24 C 0.52 5.60 7.71 -11.87 -0.09 5.51 16 25 O -0.56 -8.82 17.78 5.56 0.10 -8.72 16 26 N -0.71 -6.91 5.00 -54.85 -0.27 -7.18 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.39 10.34 7.67 -40.82 -0.31 10.03 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.37 4.64 9.05 45.56 0.41 5.06 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.41 3.31 8.35 -40.82 -0.34 2.97 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.26 8.11 -51.93 -0.42 -0.16 16 39 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.41 4.86 6.84 -40.82 -0.28 4.58 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -36.32 357.40 -7.45 -43.77 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -5.97 Total: 13.58 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.35 Total: 5.03 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.21 Total: -60.33 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.28 Total: -24.74 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.32 -7.45 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667852762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.171 kcal (2) G-P(sol) polarization free energy of solvation -36.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds