Wall clock time and date at job start Fri Apr 10 2020 17:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48504 * 109.47077 * 239.99991 * 3 2 1 5 5 H 1.48500 * 109.46940 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47339 * 119.99835 * 3 2 1 7 7 C 1.38816 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99787 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00271 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47836 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46941 * 305.00435 * 11 10 9 13 13 O 1.42903 * 109.46865 * 65.00109 * 11 10 9 14 14 C 1.52993 * 109.47675 * 185.00218 * 11 10 9 15 15 N 1.46502 * 109.47511 * 180.02562 * 14 11 10 16 16 C 1.34775 * 119.99787 * 180.02562 * 15 14 11 17 17 O 1.21275 * 120.00468 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99515 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.46768 * 179.97438 * 18 16 15 20 20 H 1.08998 * 109.13181 * 55.52161 * 19 18 16 21 21 C 1.52927 * 109.29578 * 174.99836 * 19 18 16 22 22 C 1.53348 * 108.67100 * 171.06249 * 21 19 18 23 23 C 1.53077 * 108.41700 * 292.45922 * 22 21 19 24 24 C 1.50171 * 109.89019 * 48.90804 * 23 22 21 25 25 O 1.21283 * 118.24346 * 162.39572 * 24 23 22 26 26 N 1.33354 * 123.51221 * 342.42859 * 24 23 22 27 27 H 0.96993 * 120.00079 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00490 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.46876 * 60.00069 * 10 9 7 30 30 H 1.09005 * 109.47336 * 300.00320 * 10 9 7 31 31 H 0.96700 * 114.00110 * 59.99897 * 13 11 10 32 32 H 1.08997 * 109.47125 * 59.99633 * 14 11 10 33 33 H 1.09008 * 109.47113 * 300.00111 * 14 11 10 34 34 H 0.96996 * 119.99771 * 359.97438 * 15 14 11 35 35 H 1.09004 * 109.46870 * 59.99651 * 18 16 15 36 36 H 1.08991 * 109.46829 * 299.99736 * 18 16 15 37 37 H 1.08996 * 109.60496 * 290.82065 * 21 19 18 38 38 H 1.08997 * 109.60247 * 51.30926 * 21 19 18 39 39 H 1.08997 * 109.67264 * 52.20642 * 22 21 19 40 40 H 1.09000 * 109.67050 * 172.73216 * 22 21 19 41 41 H 1.09003 * 109.39570 * 288.78247 * 23 22 21 42 42 H 1.08998 * 109.40837 * 169.04268 * 23 22 21 43 43 H 0.97002 * 117.94938 * 182.22122 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0639 -4.8198 0.0012 12 1 0.3800 -4.7127 0.8433 13 8 0.3212 -4.8121 -1.2196 14 6 1.8247 -6.1411 0.1269 15 7 0.8728 -7.2547 0.1269 16 6 1.3188 -8.5225 0.2292 17 8 2.5081 -8.7414 0.3208 18 6 0.3394 -9.6679 0.2298 19 6 1.1003 -10.9893 0.3555 20 1 1.7264 -10.9576 1.2472 21 6 0.0996 -12.1388 0.4812 22 6 0.8612 -13.4660 0.3805 23 6 1.4071 -13.6036 -1.0429 24 6 2.1098 -12.3389 -1.4451 25 8 2.8696 -12.3799 -2.3896 26 7 1.9436 -11.1732 -0.8190 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.6847 -3.7145 0.8906 30 1 2.6848 -3.7146 -0.8894 31 1 0.8669 -4.9036 -2.0127 32 1 2.3913 -6.1470 1.0581 33 1 2.5086 -6.2482 -0.7151 34 1 -0.0784 -7.0796 0.0541 35 1 -0.2269 -9.6622 -0.7016 36 1 -0.3446 -9.5607 1.0716 37 1 -0.4063 -12.0796 1.4448 38 1 -0.6329 -12.0756 -0.3235 39 1 1.6865 -13.4703 1.0924 40 1 0.1857 -14.2939 0.5962 41 1 0.5825 -13.7939 -1.7300 42 1 2.1092 -14.4363 -1.0827 43 1 2.4131 -10.3991 -1.1673 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667852762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:40 Heat of formation + Delta-G solvation = -161.974695 kcal Electronic energy + Delta-G solvation = -23883.160695 eV Core-core repulsion = 20154.361633 eV Total energy + Delta-G solvation = -3728.799063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60814 -40.55915 -39.00398 -37.68046 -36.09955 -35.28898 -34.07140 -33.23806 -32.43422 -30.67107 -28.68744 -26.88894 -24.80721 -23.96229 -23.26682 -22.77297 -21.30113 -20.02620 -19.26675 -18.36528 -18.25670 -17.56305 -17.37460 -17.02943 -16.65951 -16.43800 -16.18531 -15.86349 -15.46340 -15.20023 -14.99028 -14.79282 -14.48615 -14.33921 -14.11332 -14.00103 -13.80973 -13.34814 -12.98285 -12.88170 -12.73216 -12.54911 -12.22507 -12.21327 -11.99276 -11.87982 -11.82478 -11.78870 -11.19103 -10.99227 -10.89266 -10.68205 -10.14495 -10.07415 -9.03283 -7.96682 -5.26299 1.46711 1.49606 1.55845 1.61102 1.62847 2.12877 2.36318 2.55098 3.34092 3.45179 3.54968 3.59324 3.68553 3.71862 3.96682 3.99862 4.07923 4.20067 4.24513 4.31702 4.41093 4.58210 4.62181 4.66807 4.73145 4.75915 4.91418 4.92547 5.01224 5.12508 5.14298 5.19668 5.35613 5.40315 5.46274 5.77697 6.24539 6.43285 6.53913 6.76347 7.18655 7.24608 7.31694 8.06592 8.29905 9.26189 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.043171 B = 0.002147 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.421297 B =13038.904619 C =13281.287487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.121 3.879 11 C 0.109 3.891 12 H 0.103 0.897 13 O -0.562 6.562 14 C 0.101 3.899 15 N -0.711 5.711 16 C 0.503 3.497 17 O -0.585 6.585 18 C -0.147 4.147 19 C 0.150 3.850 20 H 0.074 0.926 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.131 4.131 24 C 0.506 3.494 25 O -0.624 6.624 26 N -0.708 5.708 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.384 0.616 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.417 0.583 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -28.985 3.541 29.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.093 0.907 9 N -0.383 5.383 10 C -0.006 4.006 11 C 0.049 3.951 12 H 0.121 0.879 13 O -0.369 6.369 14 C -0.024 4.024 15 N -0.363 5.363 16 C 0.291 3.709 17 O -0.466 6.466 18 C -0.186 4.186 19 C 0.045 3.955 20 H 0.092 0.908 21 C -0.165 4.165 22 C -0.157 4.157 23 C -0.170 4.170 24 C 0.295 3.705 25 O -0.508 6.508 26 N -0.358 5.358 27 H 0.061 0.939 28 H 0.209 0.791 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.233 0.767 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.254 0.746 35 H 0.137 0.863 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.117 0.883 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.133 -29.164 3.656 29.681 hybrid contribution 0.750 1.842 -0.667 2.097 sum -3.383 -27.322 2.989 27.693 Atomic orbital electron populations 1.69816 1.06590 1.26237 1.59056 1.25603 0.96444 1.01203 1.03492 0.85195 0.77195 0.79046 0.78198 1.20458 1.22046 1.20304 1.19596 0.91482 0.85403 1.41811 0.90712 1.42407 1.05736 1.00738 1.89392 1.21422 0.94348 0.85927 0.98946 1.22088 0.93443 0.91316 0.88233 0.87920 1.86550 1.38108 1.96220 1.15997 1.21791 0.92176 0.85551 1.02892 1.45858 1.11487 1.05165 1.73784 1.21400 0.89851 0.84760 0.74861 1.90720 1.19135 1.85188 1.51575 1.22212 0.98032 0.90170 1.08231 1.20982 0.91972 0.94971 0.87580 0.90807 1.22017 0.96876 0.91741 1.05845 1.21682 1.00923 0.99042 0.94038 1.21705 1.01852 0.93188 1.00283 1.21079 0.81193 0.86821 0.81371 1.90731 1.40924 1.86925 1.32210 1.45898 1.48133 1.10921 1.30834 0.93917 0.79070 0.94963 0.95460 0.76703 0.90748 0.91444 0.74617 0.86329 0.83403 0.86614 0.89393 0.91543 0.87537 0.86577 0.88255 0.77369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -36.97 5.55 -343.45 -1.91 -38.87 16 10 C 0.12 4.51 5.90 86.38 0.51 5.02 16 11 C 0.11 3.05 3.09 30.59 0.09 3.14 16 12 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 13 O -0.56 -16.12 13.03 -148.98 -1.94 -18.06 16 14 C 0.10 2.33 5.34 86.38 0.46 2.79 16 15 N -0.71 -12.65 5.45 -463.06 -2.52 -15.17 16 16 C 0.50 9.25 7.47 87.66 0.65 9.90 16 17 O -0.59 -15.93 14.49 -3.01 -0.04 -15.98 16 18 C -0.15 -1.26 5.35 29.85 0.16 -1.10 16 19 C 0.15 1.65 2.65 45.11 0.12 1.77 16 20 H 0.07 1.00 7.96 -2.39 -0.02 0.98 16 21 C -0.13 -0.49 5.30 30.69 0.16 -0.32 16 22 C -0.12 -0.63 6.03 30.74 0.19 -0.44 16 23 C -0.13 -1.48 6.03 29.71 0.18 -1.30 16 24 C 0.51 11.07 7.71 87.71 0.68 11.75 16 25 O -0.62 -20.59 17.78 -3.04 -0.05 -20.64 16 26 N -0.71 -13.65 5.00 -446.64 -2.23 -15.89 16 27 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.38 20.29 7.67 -92.70 -0.71 19.58 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.38 9.16 9.05 -74.06 -0.67 8.49 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.42 5.80 8.35 -92.71 -0.77 5.03 16 35 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.09 0.21 8.11 -2.39 -0.02 0.19 16 39 H 0.07 0.46 8.13 -2.39 -0.02 0.44 16 40 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.39 9.68 6.84 -92.71 -0.63 9.05 16 Total: -1.00 -81.33 357.40 -3.62 -84.95 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -1.73 Total: 36.25 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 4.51 Total: 14.22 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -6.38 Total: -128.76 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -2.04 Total: -54.67 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -81.33 -3.62 -84.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667852762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.025 kcal (2) G-P(sol) polarization free energy of solvation -81.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds