Wall clock time and date at job start Fri Apr 10 2020 17:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47011 * 2 1 4 4 O 1.21277 * 120.00023 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00003 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00091 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.46957 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.88884 * 297.57865 * 11 10 9 13 13 C 1.55159 * 111.00665 * 173.65177 * 11 10 9 14 14 C 1.54325 * 102.93964 * 206.42794 * 13 11 10 15 15 N 1.47021 * 107.27374 * 22.19175 * 14 13 11 16 16 C 1.36940 * 125.64549 * 181.09817 * 15 14 13 17 17 H 1.08000 * 119.99598 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00060 * 359.95273 * 16 15 14 19 19 N 1.31617 * 120.00088 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99662 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47546 * 60.00581 * 20 18 16 22 22 H 1.48501 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47125 * 299.99950 * 20 18 16 24 24 C 1.47418 * 108.70123 * 1.05974 * 15 14 13 25 25 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46714 * 299.99790 * 1 2 3 27 27 H 1.09000 * 109.47263 * 59.99136 * 1 2 3 28 28 H 1.08998 * 109.46547 * 240.00633 * 2 1 3 29 29 H 1.08994 * 109.47099 * 120.00444 * 2 1 3 30 30 H 0.97003 * 119.99349 * 0.02562 * 5 3 2 31 31 H 1.09004 * 109.47166 * 60.00164 * 6 5 3 32 32 H 1.08994 * 109.47507 * 299.99870 * 6 5 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 34 34 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 35 35 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 36 36 H 0.96703 * 113.99982 * 59.28787 * 12 11 10 37 37 H 1.09001 * 110.71900 * 324.78868 * 13 11 10 38 38 H 1.08998 * 110.71745 * 88.06456 * 13 11 10 39 39 H 1.08995 * 109.87908 * 262.77225 * 14 13 11 40 40 H 1.09001 * 109.88246 * 141.61179 * 14 13 11 41 41 H 0.96997 * 119.99959 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.36689 * 217.02678 * 24 15 14 43 43 H 1.08999 * 110.45811 * 94.75957 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3528 3.0482 -0.0001 8 8 5.9592 1.9979 -0.0011 9 7 6.0267 4.2154 -0.0053 10 6 7.4916 4.2154 -0.0115 11 6 8.0017 5.6579 -0.0158 12 8 7.5838 6.3425 -1.1985 13 6 9.5450 5.7025 0.1377 14 6 9.7884 7.0835 0.7822 15 7 8.5360 7.4855 1.4390 16 6 8.3282 8.6613 2.1095 17 1 7.3675 8.8639 2.5593 18 6 9.3526 9.5925 2.2115 19 7 10.5234 9.3456 1.6632 20 14 9.0693 11.1961 3.1268 21 1 8.7085 10.9039 4.5374 22 1 10.3096 12.0120 3.0915 23 1 7.9644 11.9475 2.4786 24 6 7.5407 6.4136 1.2554 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9877 0.9298 -0.0013 31 1 3.4829 3.5616 0.8906 32 1 3.4820 3.5626 -0.8894 33 1 5.5417 5.0555 -0.0047 34 1 7.8587 3.7033 0.8779 35 1 7.8512 3.6998 -0.9020 36 1 6.6243 6.3831 -1.3112 37 1 9.8905 4.9042 0.7946 38 1 10.0314 5.6401 -0.8358 39 1 10.0536 7.8096 0.0137 40 1 10.5877 7.0127 1.5198 41 1 11.2390 9.9965 1.7341 42 1 6.5484 6.8390 1.1050 43 1 7.5391 5.7439 2.1153 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671982825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:24 Heat of formation + Delta-G solvation = -100.087454 kcal Electronic energy + Delta-G solvation = -24287.614622 eV Core-core repulsion = 20561.499191 eV Total energy + Delta-G solvation = -3726.115430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.51711 -39.60611 -38.50267 -35.25865 -34.75777 -34.29152 -33.14164 -32.16663 -29.96410 -29.02665 -27.62563 -25.68092 -24.35333 -23.36944 -21.06428 -20.68519 -20.16981 -19.92430 -18.27210 -17.10882 -16.95965 -16.55571 -16.41859 -15.93224 -15.56653 -15.26072 -14.72166 -14.52524 -14.32452 -13.95278 -13.90665 -13.42256 -13.38724 -12.97020 -12.76402 -12.65828 -12.26002 -12.10048 -11.96203 -11.76154 -11.52020 -11.03131 -10.90198 -10.79108 -10.47773 -10.33753 -10.24100 -10.17016 -9.98508 -9.78440 -9.52838 -9.48472 -9.27058 -8.61914 -6.87281 -5.74390 -3.08415 2.26374 2.35163 2.51626 3.17812 3.38676 3.42778 3.44293 4.29707 4.41856 4.43026 4.47311 4.71836 4.72496 4.80300 4.98781 5.02413 5.06628 5.21022 5.30236 5.45071 5.47226 5.57828 5.59046 5.73790 5.84646 5.87177 5.98650 6.11209 6.13326 6.30660 6.37774 6.48677 6.54151 7.13709 7.17134 7.49598 7.60046 7.79893 7.84402 7.89202 7.93321 8.22034 9.17580 9.77673 10.42366 11.37223 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.002641 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.661365 B =10597.857906 C =11365.538626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.542 6.542 5 N -0.720 5.720 6 C 0.098 3.902 7 C 0.510 3.490 8 O -0.541 6.541 9 N -0.719 5.719 10 C 0.104 3.896 11 C 0.101 3.899 12 O -0.536 6.536 13 C -0.128 4.128 14 C 0.181 3.819 15 N -0.598 5.598 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.117 3.883 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.412 0.588 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.403 0.597 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.364 0.636 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.254 0.746 42 H 0.038 0.962 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -17.662 -4.816 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.419 6.419 5 N -0.376 5.376 6 C -0.030 4.030 7 C 0.295 3.705 8 O -0.418 6.418 9 N -0.371 5.371 10 C -0.020 4.020 11 C 0.059 3.941 12 O -0.340 6.340 13 C -0.167 4.167 14 C 0.057 3.943 15 N -0.324 5.324 16 C -0.360 4.360 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.744 3.256 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.010 4.010 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.250 0.750 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.238 0.762 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.209 0.791 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.886 -17.463 -4.836 22.235 hybrid contribution -0.509 0.943 0.594 1.225 sum -13.395 -16.520 -4.242 21.687 Atomic orbital electron populations 1.21539 0.92846 1.01684 1.03444 1.21620 0.98703 0.93320 1.04650 1.20842 0.81506 0.92197 0.75506 1.90720 1.55284 1.46544 1.49308 1.45776 1.07734 1.08192 1.75916 1.21071 0.91021 0.85770 1.05115 1.20462 0.89637 0.84153 0.76200 1.90698 1.69967 1.31156 1.50009 1.45902 1.08114 1.08445 1.74665 1.22106 0.78385 0.98290 1.03211 1.22732 0.97221 0.87794 0.86381 1.86656 1.26141 1.78788 1.42400 1.22914 0.90952 1.01436 1.01351 1.21146 0.88633 0.89047 0.95505 1.44330 1.08314 1.16367 1.63394 1.18973 0.97649 0.92523 1.26891 0.90551 1.24812 0.95935 0.98786 1.00757 1.69944 1.02762 1.35481 1.48505 0.86181 0.76872 0.83141 0.79418 1.21163 1.21554 1.21138 1.22131 0.93809 0.91408 0.93685 0.91978 0.91907 0.91937 0.88718 0.88688 0.74987 0.88127 0.88195 0.76211 0.90163 0.90540 0.79055 0.90885 0.90888 0.93089 0.93739 0.93611 0.94369 0.95628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.16 0.34 -0.55 16 2 C -0.14 -0.87 6.42 -27.88 -0.18 -1.05 16 3 C 0.51 4.92 7.83 -10.98 -0.09 4.83 16 4 O -0.54 -7.17 15.98 5.56 0.09 -7.08 16 5 N -0.72 -6.41 5.53 -61.48 -0.34 -6.75 16 6 C 0.10 0.87 6.15 -5.20 -0.03 0.84 16 7 C 0.51 5.54 7.90 -10.98 -0.09 5.46 16 8 O -0.54 -7.48 15.67 5.55 0.09 -7.39 16 9 N -0.72 -7.54 5.17 -60.29 -0.31 -7.85 16 10 C 0.10 1.35 4.89 -4.04 -0.02 1.33 16 11 C 0.10 1.62 0.95 -88.47 -0.08 1.54 16 12 O -0.54 -8.77 13.19 -35.23 -0.46 -9.23 16 13 C -0.13 -2.32 6.16 -24.89 -0.15 -2.47 16 14 C 0.18 4.36 5.37 -3.06 -0.02 4.34 16 15 N -0.60 -14.90 3.39 -170.08 -0.58 -15.47 16 16 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.93 10.31 55.49 0.57 -26.35 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.12 2.22 5.93 -2.53 -0.02 2.20 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.41 3.38 7.44 -40.82 -0.30 3.07 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 3.46 7.30 -40.82 -0.30 3.16 16 34 H 0.08 1.09 8.11 -51.93 -0.42 0.66 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.36 4.37 8.16 45.56 0.37 4.74 16 37 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 40 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.04 0.68 7.97 -51.93 -0.41 0.26 16 43 H 0.03 0.49 8.03 -51.93 -0.42 0.07 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -35.09 355.92 -7.20 -42.29 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.02 Total: 5.91 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -0.58 Total: 9.64 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.66 Total: -56.43 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.29 Total: -23.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.09 -7.20 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671982825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.798 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds