Wall clock time and date at job start Fri Apr 10 2020 17:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47011 * 2 1 4 4 O 1.21277 * 120.00023 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00003 * 180.02562 * 3 2 1 6 6 C 1.46491 * 120.00091 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.46957 * 179.97438 * 6 5 3 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.88884 * 297.57865 * 11 10 9 13 13 C 1.55159 * 111.00665 * 173.65177 * 11 10 9 14 14 C 1.54325 * 102.93964 * 206.42794 * 13 11 10 15 15 N 1.47021 * 107.27374 * 22.19175 * 14 13 11 16 16 C 1.36940 * 125.64549 * 181.09817 * 15 14 13 17 17 H 1.08000 * 119.99598 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00060 * 359.95273 * 16 15 14 19 19 N 1.31617 * 120.00088 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99662 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47546 * 60.00581 * 20 18 16 22 22 H 1.48501 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47125 * 299.99950 * 20 18 16 24 24 C 1.47418 * 108.70123 * 1.05974 * 15 14 13 25 25 H 1.09001 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46714 * 299.99790 * 1 2 3 27 27 H 1.09000 * 109.47263 * 59.99136 * 1 2 3 28 28 H 1.08998 * 109.46547 * 240.00633 * 2 1 3 29 29 H 1.08994 * 109.47099 * 120.00444 * 2 1 3 30 30 H 0.97003 * 119.99349 * 0.02562 * 5 3 2 31 31 H 1.09004 * 109.47166 * 60.00164 * 6 5 3 32 32 H 1.08994 * 109.47507 * 299.99870 * 6 5 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 34 34 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 35 35 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 36 36 H 0.96703 * 113.99982 * 59.28787 * 12 11 10 37 37 H 1.09001 * 110.71900 * 324.78868 * 13 11 10 38 38 H 1.08998 * 110.71745 * 88.06456 * 13 11 10 39 39 H 1.08995 * 109.87908 * 262.77225 * 14 13 11 40 40 H 1.09001 * 109.88246 * 141.61179 * 14 13 11 41 41 H 0.96997 * 119.99959 * 179.97438 * 19 18 16 42 42 H 1.09002 * 110.36689 * 217.02678 * 24 15 14 43 43 H 1.08999 * 110.45811 * 94.75957 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3528 3.0482 -0.0001 8 8 5.9592 1.9979 -0.0011 9 7 6.0267 4.2154 -0.0053 10 6 7.4916 4.2154 -0.0115 11 6 8.0017 5.6579 -0.0158 12 8 7.5838 6.3425 -1.1985 13 6 9.5450 5.7025 0.1377 14 6 9.7884 7.0835 0.7822 15 7 8.5360 7.4855 1.4390 16 6 8.3282 8.6613 2.1095 17 1 7.3675 8.8639 2.5593 18 6 9.3526 9.5925 2.2115 19 7 10.5234 9.3456 1.6632 20 14 9.0693 11.1961 3.1268 21 1 8.7085 10.9039 4.5374 22 1 10.3096 12.0120 3.0915 23 1 7.9644 11.9475 2.4786 24 6 7.5407 6.4136 1.2554 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9877 0.9298 -0.0013 31 1 3.4829 3.5616 0.8906 32 1 3.4820 3.5626 -0.8894 33 1 5.5417 5.0555 -0.0047 34 1 7.8587 3.7033 0.8779 35 1 7.8512 3.6998 -0.9020 36 1 6.6243 6.3831 -1.3112 37 1 9.8905 4.9042 0.7946 38 1 10.0314 5.6401 -0.8358 39 1 10.0536 7.8096 0.0137 40 1 10.5877 7.0127 1.5198 41 1 11.2390 9.9965 1.7341 42 1 6.5484 6.8390 1.1050 43 1 7.5391 5.7439 2.1153 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671982825.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:24 Heat of formation + Delta-G solvation = -129.833877 kcal Electronic energy + Delta-G solvation = -24288.904523 eV Core-core repulsion = 20561.499191 eV Total energy + Delta-G solvation = -3727.405332 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40184 -40.56350 -39.76400 -36.80454 -35.61447 -35.32098 -34.02031 -33.68492 -31.51805 -30.33037 -28.81331 -27.27777 -25.44544 -24.49585 -22.38462 -21.55543 -21.39076 -21.29962 -19.17633 -18.81095 -18.06231 -17.46549 -17.20330 -16.97512 -16.71341 -16.35167 -16.23678 -15.83805 -15.61395 -15.18059 -15.04031 -14.57494 -14.38628 -14.14275 -13.91548 -13.78244 -13.33006 -13.23135 -13.13159 -12.92967 -12.73939 -12.61587 -12.35563 -12.10997 -12.04505 -12.00447 -11.79934 -11.74987 -11.14859 -11.00231 -10.88536 -10.68017 -10.32309 -10.15456 -8.88878 -7.85018 -5.20402 1.42689 1.45647 1.48878 1.55040 1.62431 1.71940 2.42464 2.49006 3.18173 3.33507 3.44339 3.54024 3.67937 3.84368 3.93520 3.97435 4.24646 4.25706 4.33795 4.37586 4.49553 4.59259 4.66361 4.76544 4.81764 4.94368 4.96625 5.02547 5.07616 5.08995 5.23018 5.23714 5.40342 5.43928 5.64143 5.76568 6.19097 6.31842 6.47420 6.82882 7.01371 7.09321 7.19228 7.77020 8.40543 9.25370 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.002641 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.661365 B =10597.857906 C =11365.538626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.509 3.491 4 O -0.584 6.584 5 N -0.717 5.717 6 C 0.100 3.900 7 C 0.517 3.483 8 O -0.569 6.569 9 N -0.712 5.712 10 C 0.120 3.880 11 C 0.121 3.879 12 O -0.553 6.553 13 C -0.121 4.121 14 C 0.189 3.811 15 N -0.622 5.622 16 C -0.242 4.242 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.277 1.277 24 C 0.111 3.889 25 H 0.084 0.916 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.417 0.583 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.414 0.586 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.384 0.616 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.006 0.994 40 H 0.008 0.992 41 H 0.246 0.754 42 H 0.055 0.945 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.299 -19.283 -4.904 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.297 3.703 4 O -0.464 6.464 5 N -0.372 5.372 6 C -0.027 4.027 7 C 0.304 3.696 8 O -0.448 6.448 9 N -0.365 5.365 10 C -0.004 4.004 11 C 0.079 3.921 12 O -0.360 6.360 13 C -0.159 4.159 14 C 0.064 3.936 15 N -0.348 5.348 16 C -0.371 4.371 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.202 1.202 24 C -0.015 4.015 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.256 0.744 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.251 0.749 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.233 0.767 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.646 -19.111 -4.927 24.577 hybrid contribution -0.015 1.421 0.611 1.547 sum -14.661 -17.690 -4.316 23.378 Atomic orbital electron populations 1.21547 0.93352 1.02675 1.01977 1.21696 0.98178 0.91242 1.06677 1.21482 0.81194 0.93221 0.74362 1.90702 1.56217 1.48072 1.51419 1.45816 1.07760 1.08341 1.75325 1.21088 0.89409 0.86198 1.05991 1.20675 0.90213 0.83535 0.75221 1.90694 1.70652 1.32145 1.51319 1.45756 1.07146 1.09106 1.74446 1.21770 0.79703 0.95452 1.03495 1.22411 0.95500 0.89207 0.84976 1.86623 1.28243 1.79079 1.42100 1.22794 0.93150 0.98267 1.01709 1.20840 0.87919 0.91361 0.93529 1.44629 1.09972 1.17018 1.63160 1.19425 0.97809 0.93513 1.26351 0.89700 1.25684 0.95930 1.02280 1.02305 1.70185 1.03475 1.36202 1.50216 0.85143 0.76448 0.79152 0.78520 1.20191 1.22302 1.20247 1.22382 0.93308 0.90363 0.95413 0.89704 0.93460 0.93363 0.86493 0.86611 0.74411 0.87482 0.87049 0.74915 0.90174 0.90038 0.76746 0.88575 0.89935 0.97522 0.97338 0.94480 0.92678 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.20 71.98 0.66 -0.93 16 2 C -0.14 -1.35 6.42 29.85 0.19 -1.16 16 3 C 0.51 8.91 7.83 87.66 0.69 9.59 16 4 O -0.58 -15.00 15.98 -3.02 -0.05 -15.04 16 5 N -0.72 -11.24 5.53 -466.81 -2.58 -13.82 16 6 C 0.10 1.56 6.15 85.64 0.53 2.08 16 7 C 0.52 9.86 7.90 87.66 0.69 10.55 16 8 O -0.57 -14.34 15.67 -3.04 -0.05 -14.39 16 9 N -0.71 -12.79 5.17 -463.06 -2.39 -15.18 16 10 C 0.12 2.77 4.89 86.38 0.42 3.19 16 11 C 0.12 3.63 0.95 -9.40 -0.01 3.63 16 12 O -0.55 -16.94 13.19 -148.98 -1.96 -18.91 16 13 C -0.12 -4.26 6.16 31.78 0.20 -4.06 16 14 C 0.19 9.33 5.37 86.73 0.47 9.80 16 15 N -0.62 -31.09 3.39 -692.01 -2.35 -33.44 16 16 C -0.24 -13.37 10.28 84.03 0.86 -12.51 16 17 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 19 N -0.95 -57.85 10.31 21.65 0.22 -57.63 16 20 Si 0.98 45.73 29.55 68.60 2.03 47.75 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 C 0.11 4.01 5.93 86.86 0.51 4.53 16 25 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.68 8.10 -2.38 -0.02 0.66 16 27 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 28 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.42 5.87 7.44 -92.71 -0.69 5.18 16 31 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.41 5.76 7.30 -92.71 -0.68 5.09 16 34 H 0.08 1.92 8.11 -2.39 -0.02 1.90 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.38 8.14 8.16 -74.06 -0.60 7.53 16 37 H 0.10 2.94 8.01 -2.39 -0.02 2.93 16 38 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.01 0.37 7.38 -2.39 -0.02 0.36 16 40 H 0.01 0.47 7.51 -2.39 -0.02 0.45 16 41 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 42 H 0.06 1.81 7.97 -2.39 -0.02 1.79 16 43 H 0.04 1.23 8.03 -2.39 -0.02 1.21 16 Total: -1.00 -78.22 355.92 -2.38 -80.60 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -0.93 Total: 18.82 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 5.68 Total: 21.23 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -7.10 Total: -120.07 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -2.06 Total: -48.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -78.22 -2.38 -80.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671982825.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.231 kcal (2) G-P(sol) polarization free energy of solvation -78.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds