Wall clock time and date at job start Fri Apr 10 2020 17:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47321 * 2 1 4 4 O 1.21277 * 120.00243 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99679 * 180.02562 * 3 2 1 6 6 C 1.46506 * 119.99855 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47199 * 180.02562 * 6 5 3 8 8 O 1.21280 * 120.00012 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99702 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99960 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47435 * 180.02562 * 10 9 7 12 12 O 1.42898 * 110.64101 * 61.86088 * 11 10 9 13 13 C 1.55156 * 110.72190 * 185.00036 * 11 10 9 14 14 C 1.54909 * 101.58520 * 153.86355 * 13 11 10 15 15 N 1.47428 * 104.83177 * 322.99367 * 14 13 11 16 16 C 1.36934 * 125.64941 * 204.09213 * 15 14 13 17 17 H 1.08005 * 119.99945 * 168.09556 * 16 15 14 18 18 C 1.38808 * 120.00062 * 348.09168 * 16 15 14 19 19 N 1.31616 * 120.00209 * 325.98205 * 18 16 15 20 20 Si 1.86797 * 120.00020 * 145.97635 * 18 16 15 21 21 H 1.48505 * 109.46896 * 60.00699 * 20 18 16 22 22 H 1.48501 * 109.47246 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47334 * 300.00799 * 20 18 16 24 24 C 1.47022 * 108.70213 * 24.35224 * 15 14 13 25 25 H 1.09001 * 109.46861 * 300.00398 * 1 2 3 26 26 H 1.09001 * 109.46617 * 59.99741 * 1 2 3 27 27 H 1.08997 * 109.47414 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46861 * 239.99602 * 2 1 3 29 29 H 1.09004 * 109.46934 * 120.00652 * 2 1 3 30 30 H 0.96994 * 120.00582 * 359.97438 * 5 3 2 31 31 H 1.08997 * 109.47175 * 59.99301 * 6 5 3 32 32 H 1.09004 * 109.46779 * 299.99610 * 6 5 3 33 33 H 0.96998 * 120.00648 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.46862 * 59.99917 * 10 9 7 35 35 H 1.09008 * 109.47299 * 300.00548 * 10 9 7 36 36 H 0.96701 * 113.99984 * 303.13966 * 12 11 10 37 37 H 1.09008 * 111.00201 * 35.78931 * 13 11 10 38 38 H 1.09000 * 111.00349 * 271.93995 * 13 11 10 39 39 H 1.08995 * 110.37269 * 204.15531 * 14 13 11 40 40 H 1.09004 * 110.36332 * 81.82771 * 14 13 11 41 41 H 0.97004 * 119.99808 * 354.25074 * 19 18 16 42 42 H 1.09001 * 109.88532 * 118.13560 * 24 15 14 43 43 H 1.09005 * 109.88581 * 239.29838 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2444 2.3426 0.0005 5 7 3.3575 1.6669 -0.0005 6 6 3.8459 3.0481 0.0000 7 6 5.3529 3.0481 -0.0013 8 8 5.9593 1.9977 -0.0032 9 7 6.0268 4.2152 -0.0016 10 6 7.4918 4.2152 -0.0024 11 6 8.0019 5.6576 -0.0020 12 8 7.5759 6.3422 1.1778 13 6 9.5478 5.6933 -0.1293 14 6 9.7746 7.0816 -0.7780 15 7 8.6505 7.2474 -1.7173 16 6 8.6471 8.0548 -2.8233 17 1 7.8563 7.9670 -3.5536 18 6 9.6600 8.9862 -3.0058 19 7 10.1990 9.5848 -1.9649 20 14 10.2583 9.3900 -4.7287 21 1 9.1297 9.9255 -5.5317 22 1 11.3381 10.4066 -4.6522 23 1 10.7829 8.1586 -5.3718 24 6 7.5315 6.4071 -1.2665 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 3.9878 0.9297 -0.0005 31 1 3.4830 3.5615 0.8904 32 1 3.4822 3.5625 -0.8895 33 1 5.5419 5.0553 -0.0006 34 1 7.8546 3.7014 -0.8926 35 1 7.8557 3.7012 0.8873 36 1 6.6172 6.3489 1.3042 37 1 9.9048 4.8950 -0.7800 38 1 10.0219 5.6378 0.8507 39 1 10.7231 7.0993 -1.3146 40 1 9.7527 7.8633 -0.0185 41 1 9.8336 9.4385 -1.0783 42 1 6.6701 7.0320 -1.0306 43 1 7.2697 5.6897 -2.0444 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671982826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:27 Heat of formation + Delta-G solvation = -104.261932 kcal Electronic energy + Delta-G solvation = -24315.454031 eV Core-core repulsion = 20589.157582 eV Total energy + Delta-G solvation = -3726.296449 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.57610 -39.68677 -38.67622 -35.51339 -34.82297 -34.40497 -33.16090 -32.33944 -29.95139 -29.12225 -27.77295 -25.54662 -24.35173 -23.42913 -21.13539 -20.71544 -20.21061 -20.14208 -18.35616 -17.53762 -17.19544 -16.64967 -16.46403 -16.09559 -15.62194 -15.33406 -14.77792 -14.47311 -14.30768 -13.95443 -13.79581 -13.48603 -13.39621 -13.19420 -13.01285 -12.74020 -12.67595 -12.26131 -12.11684 -11.89355 -11.53640 -11.11361 -10.82103 -10.71924 -10.57470 -10.49450 -10.27302 -10.14088 -10.04473 -9.82452 -9.60090 -9.54799 -9.34253 -8.38146 -7.03047 -6.19509 -3.13540 2.21835 2.31957 2.46668 3.12681 3.48299 3.53320 3.70947 4.22107 4.27329 4.40217 4.50440 4.69053 4.70696 4.72057 4.94486 4.96407 4.99331 5.13035 5.18994 5.21076 5.43372 5.43625 5.56268 5.63354 5.73297 5.83483 5.92986 5.95762 6.02432 6.15412 6.23305 6.35299 6.40895 6.90507 7.03543 7.07965 7.13136 7.71652 7.72348 7.80334 7.86534 8.43385 8.95141 9.76772 10.31047 11.14969 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.024884 B = 0.002646 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.932625 B =10577.488902 C =11162.122648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.542 6.542 5 N -0.721 5.721 6 C 0.098 3.902 7 C 0.511 3.489 8 O -0.539 6.539 9 N -0.720 5.720 10 C 0.105 3.895 11 C 0.105 3.895 12 O -0.543 6.543 13 C -0.119 4.119 14 C 0.148 3.852 15 N -0.597 5.597 16 C -0.348 4.348 17 H 0.067 0.933 18 C -0.020 4.020 19 N -0.905 5.905 20 Si 1.057 2.943 21 H -0.293 1.293 22 H -0.285 1.285 23 H -0.294 1.294 24 C 0.116 3.884 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.412 0.588 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.403 0.597 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.366 0.634 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.270 0.730 42 H 0.025 0.975 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 -17.975 6.337 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.300 3.700 4 O -0.418 6.418 5 N -0.376 5.376 6 C -0.030 4.030 7 C 0.296 3.704 8 O -0.417 6.417 9 N -0.373 5.373 10 C -0.019 4.019 11 C 0.064 3.936 12 O -0.347 6.347 13 C -0.157 4.157 14 C 0.022 3.978 15 N -0.325 5.325 16 C -0.475 4.475 17 H 0.084 0.916 18 C -0.223 4.223 19 N -0.544 5.544 20 Si 0.887 3.113 21 H -0.220 1.220 22 H -0.211 1.211 23 H -0.221 1.221 24 C -0.010 4.010 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.250 0.750 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.238 0.762 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.213 0.787 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.620 -17.019 5.442 21.314 hybrid contribution -1.694 -0.767 0.751 2.005 sum -13.314 -17.786 6.193 23.064 Atomic orbital electron populations 1.21539 0.92823 1.01705 1.03449 1.21622 0.98721 0.93284 1.04663 1.20845 0.81481 0.92217 0.75484 1.90721 1.55282 1.46541 1.49291 1.45777 1.07757 1.08151 1.75956 1.21069 0.90911 0.85838 1.05137 1.20467 0.89680 0.84089 0.76133 1.90702 1.69971 1.31116 1.49877 1.45881 1.08015 1.08514 1.74862 1.22112 0.78537 0.97847 1.03417 1.22543 0.96985 0.88315 0.85801 1.86638 1.26582 1.78164 1.43348 1.22825 0.91018 1.00620 1.01278 1.21508 0.92457 0.91749 0.92066 1.44514 1.08622 1.50555 1.28778 1.19659 1.13963 1.16942 0.96977 0.91559 1.25682 0.97796 0.93715 1.05114 1.70787 1.46079 1.36845 1.00726 0.83642 0.76512 0.75955 0.75222 1.22001 1.21088 1.22101 1.21934 0.92435 0.93786 0.92862 0.91931 0.91903 0.91958 0.88673 0.88708 0.74979 0.88187 0.88088 0.76219 0.89963 0.90386 0.78718 0.90066 0.90502 0.92714 0.95184 0.91943 0.95703 0.94943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.16 0.34 -0.55 16 2 C -0.14 -0.87 6.42 -27.88 -0.18 -1.05 16 3 C 0.51 4.91 7.83 -10.99 -0.09 4.83 16 4 O -0.54 -7.16 15.98 5.56 0.09 -7.08 16 5 N -0.72 -6.40 5.53 -61.47 -0.34 -6.74 16 6 C 0.10 0.87 6.15 -5.19 -0.03 0.84 16 7 C 0.51 5.54 7.90 -10.99 -0.09 5.45 16 8 O -0.54 -7.44 15.67 5.56 0.09 -7.35 16 9 N -0.72 -7.51 5.13 -60.29 -0.31 -7.82 16 10 C 0.10 1.34 4.74 -4.04 -0.02 1.32 16 11 C 0.11 1.65 0.93 -88.78 -0.08 1.56 16 12 O -0.54 -8.33 13.10 -35.23 -0.46 -8.79 16 13 C -0.12 -2.07 6.26 -24.58 -0.15 -2.22 16 14 C 0.15 3.40 5.33 -2.53 -0.01 3.39 16 15 N -0.60 -14.85 3.33 -170.06 -0.57 -15.42 16 16 C -0.35 -9.76 9.97 -15.06 -0.15 -9.91 16 17 H 0.07 1.86 8.02 -52.48 -0.42 1.43 16 18 C -0.02 -0.58 4.95 -17.43 -0.09 -0.66 16 19 N -0.90 -27.23 12.87 55.49 0.71 -26.51 16 20 Si 1.06 25.15 30.03 -169.99 -5.10 20.05 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.12 2.25 6.04 -3.06 -0.02 2.23 16 25 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 26 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.41 3.37 7.44 -40.82 -0.30 3.07 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.40 3.43 7.37 -40.82 -0.30 3.13 16 34 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 35 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.37 4.05 8.05 45.56 0.37 4.42 16 37 H 0.08 1.31 8.04 -51.92 -0.42 0.89 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.37 7.82 -51.93 -0.41 0.96 16 40 H 0.03 0.76 7.03 -51.93 -0.36 0.39 16 41 H 0.27 8.21 6.45 -40.82 -0.26 7.94 16 42 H 0.03 0.48 8.07 -51.93 -0.42 0.07 16 43 H 0.03 0.62 7.82 -51.93 -0.41 0.22 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -35.74 356.10 -7.04 -42.78 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.95 Total: 6.29 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -0.57 Total: 5.23 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.50 Total: -56.49 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.29 Total: -23.22 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.74 -7.04 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671982826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.478 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds