Wall clock time and date at job start Fri Apr 10 2020 17:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47353 * 2 1 4 4 C 1.50703 * 109.47398 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99488 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 3 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 O 1.42894 * 112.94182 * 53.42971 * 8 7 6 10 10 C 1.53939 * 113.73376 * 281.72718 * 8 7 6 11 11 N 1.47965 * 86.18318 * 221.92110 * 10 8 7 12 12 C 1.46896 * 111.00100 * 137.57689 * 11 10 8 13 13 C 1.50699 * 109.46970 * 70.64608 * 12 11 10 14 14 O 1.21294 * 120.00179 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00421 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00345 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00055 * 359.97438 * 16 15 13 18 18 C 1.38950 * 119.99689 * 179.97438 * 16 15 13 19 19 N 1.31407 * 120.00485 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99694 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47061 * 90.00319 * 20 18 16 22 22 H 1.48503 * 109.47215 * 209.99985 * 20 18 16 23 23 H 1.48496 * 109.47476 * 330.00198 * 20 18 16 24 24 C 1.47972 * 90.75954 * 24.68659 * 11 10 8 25 25 H 1.09001 * 109.47549 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47616 * 300.00389 * 1 2 3 27 27 H 1.09003 * 109.47280 * 60.00024 * 1 2 3 28 28 H 1.08998 * 109.47142 * 239.99373 * 2 1 3 29 29 H 1.09011 * 109.46657 * 119.99931 * 2 1 3 30 30 H 1.08998 * 109.47508 * 59.99597 * 3 2 1 31 31 H 1.09002 * 109.47337 * 299.99883 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 33 33 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 34 34 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 35 35 H 0.96702 * 114.00177 * 309.66781 * 9 8 7 36 36 H 1.09004 * 113.75478 * 336.23643 * 10 8 7 37 37 H 1.08996 * 113.76197 * 107.59918 * 10 8 7 38 38 H 1.09004 * 109.46697 * 190.64022 * 12 11 10 39 39 H 1.08997 * 109.47494 * 310.64441 * 12 11 10 40 40 H 0.97010 * 119.99656 * 359.97438 * 15 13 12 41 41 H 0.97004 * 120.00654 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.75645 * 220.99382 * 24 11 10 43 43 H 1.09000 * 113.75871 * 89.63163 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1533 0.3920 0.0015 6 7 4.2209 2.6096 0.0013 7 6 5.6859 2.6095 -0.0043 8 6 6.1960 4.0519 -0.0092 9 8 5.6465 4.8406 1.0480 10 6 6.1273 4.7286 -1.3902 11 7 7.4630 5.2819 -1.0757 12 6 8.3517 5.2080 -2.2430 13 6 7.8982 6.1997 -3.2831 14 8 6.9297 6.8990 -3.0729 15 7 8.5688 6.3098 -4.4470 16 6 8.1559 7.2116 -5.3934 17 1 7.2931 7.8337 -5.2065 18 6 8.8477 7.3254 -6.5931 19 7 9.8972 6.5682 -6.8208 20 14 8.2847 8.5537 -7.8830 21 1 8.9621 9.8555 -7.6557 22 1 8.6302 8.0453 -9.2348 23 1 6.8144 8.7368 -7.7839 24 6 7.7255 4.1678 -0.1380 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.7359 3.4496 0.0009 33 1 6.0525 2.0975 0.8855 34 1 6.0459 2.0938 -0.8944 35 1 4.6828 4.7934 1.1141 36 1 6.1281 4.0263 -2.2238 37 1 5.3464 5.4848 -1.4704 38 1 9.3718 5.4419 -1.9384 39 1 8.3190 4.2021 -2.6615 40 1 9.3436 5.7508 -4.6151 41 1 10.3804 6.6478 -7.6582 42 1 8.2217 4.4760 0.7823 43 1 8.1938 3.3015 -0.6054 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672049199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:31 Heat of formation + Delta-G solvation = -92.011050 kcal Electronic energy + Delta-G solvation = -24115.271898 eV Core-core repulsion = 20389.506686 eV Total energy + Delta-G solvation = -3725.765211 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76661 -39.69514 -37.95483 -35.89282 -34.77619 -34.43247 -33.90096 -31.31585 -30.46950 -28.78900 -26.89574 -26.17585 -24.86771 -22.80205 -21.95085 -20.69036 -20.00085 -19.22488 -18.02696 -17.76127 -16.66451 -16.46442 -16.22181 -15.76647 -15.44196 -15.22565 -14.94117 -14.57818 -14.23275 -14.05280 -13.70202 -13.50426 -13.41883 -13.14402 -13.05470 -12.44546 -12.22540 -12.12624 -12.03488 -11.89485 -11.53645 -11.51238 -11.30512 -11.08462 -11.04143 -10.78127 -10.41278 -10.24333 -10.09810 -9.96822 -9.52397 -9.41716 -8.68300 -8.25690 -7.98579 -6.43621 -3.84626 2.37282 2.79828 3.16279 3.24991 3.30478 3.65903 3.87054 3.97520 4.19067 4.21587 4.41580 4.50553 4.56386 4.64791 4.85063 5.05414 5.09323 5.13851 5.22008 5.25856 5.26895 5.37728 5.43426 5.48186 5.62209 5.67224 5.70772 5.76407 5.80759 5.82250 5.95641 6.05131 6.11780 6.22691 6.56250 7.08628 7.13797 7.40991 7.53095 7.92095 8.03369 8.59044 9.15738 9.51734 10.03306 10.74106 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.002730 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.541780 B =10255.521777 C =11126.156145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.513 3.487 5 O -0.539 6.539 6 N -0.731 5.731 7 C 0.100 3.900 8 C 0.088 3.912 9 O -0.521 6.521 10 C 0.000 4.000 11 N -0.440 5.440 12 C 0.007 3.993 13 C 0.444 3.556 14 O -0.579 6.579 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.017 3.983 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.399 0.601 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.371 0.629 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.100 0.900 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 -11.538 13.889 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.300 3.700 5 O -0.416 6.416 6 N -0.385 5.385 7 C -0.024 4.024 8 C 0.045 3.955 9 O -0.326 6.326 10 C -0.129 4.129 11 N -0.163 5.163 12 C -0.125 4.125 13 C 0.229 3.771 14 O -0.463 6.463 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.209 1.209 23 H -0.194 1.194 24 C -0.112 4.112 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.234 0.766 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.218 0.782 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.725 -10.997 14.153 21.418 hybrid contribution -0.344 -0.205 -1.398 1.454 sum -12.069 -11.202 12.755 20.829 Atomic orbital electron populations 1.21797 0.95400 1.02026 1.01860 1.21280 0.95334 0.94583 1.03590 1.21743 0.91386 1.00431 1.04622 1.20812 0.90460 0.83330 0.75409 1.90716 1.70610 1.31237 1.49022 1.45962 1.07252 1.08956 1.76320 1.22023 0.80077 0.96818 1.03483 1.23053 0.95731 0.88060 0.88650 1.86636 1.25037 1.69388 1.51519 1.24519 0.95347 0.98232 0.94841 1.68476 1.01823 1.36105 1.09851 1.22515 0.98856 0.98612 0.92530 1.19650 0.86572 0.87364 0.83536 1.90520 1.29111 1.47541 1.79138 1.41875 1.28132 1.36004 1.14072 1.19690 1.12968 1.15533 0.94659 0.87947 1.25267 0.95875 0.98311 0.98511 1.69610 1.18889 1.39522 1.26270 0.85854 0.79155 0.79981 0.79280 1.20359 1.20919 1.19444 1.24127 0.92925 0.94757 0.99395 0.92383 0.92664 0.92577 0.91190 0.91274 0.88776 0.88642 0.76624 0.90356 0.90174 0.78167 0.90850 0.88268 0.88892 0.92738 0.77477 0.91845 0.88129 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.11 -0.81 5.22 -26.74 -0.14 -0.95 16 3 C -0.14 -0.92 5.70 -27.89 -0.16 -1.08 16 4 C 0.51 5.09 7.83 -10.98 -0.09 5.00 16 5 O -0.54 -7.60 15.98 5.55 0.09 -7.51 16 6 N -0.73 -6.15 5.34 -60.30 -0.32 -6.47 16 7 C 0.10 1.01 5.28 -4.04 -0.02 0.99 16 8 C 0.09 1.00 1.52 -89.69 -0.14 0.86 16 9 O -0.52 -6.01 13.50 -35.23 -0.48 -6.49 16 10 C 0.00 0.00 6.16 -2.76 -0.02 -0.02 16 11 N -0.44 -7.37 5.95 -239.59 -1.43 -8.79 16 12 C 0.01 0.12 5.31 -4.98 -0.03 0.10 16 13 C 0.44 10.52 7.59 -10.99 -0.08 10.43 16 14 O -0.58 -15.70 15.13 5.54 0.08 -15.62 16 15 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 16 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 17 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 20 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.02 0.22 7.38 -2.76 -0.02 0.20 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.07 0.57 8.10 -51.92 -0.42 0.15 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.40 2.34 7.31 -40.82 -0.30 2.04 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.87 8.04 -51.93 -0.42 0.46 16 35 H 0.37 2.72 7.61 45.56 0.35 3.07 16 36 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 40 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.08 0.87 7.75 -51.93 -0.40 0.46 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -35.25 361.03 -7.57 -42.83 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.05 Total: 11.78 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -0.56 Total: 7.04 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -1.08 Total: -53.49 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.30 Total: -29.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.25 -7.57 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672049199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.184 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds