Wall clock time and date at job start Fri Apr 10 2020 17:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34633 * 116.99954 * 2 1 4 4 O 1.21506 * 120.00064 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00074 * 180.02562 * 3 2 1 6 6 C 1.46506 * 120.00301 * 180.02562 * 5 3 2 7 7 C 1.50698 * 109.46971 * 179.97438 * 6 5 3 8 8 O 1.21277 * 120.00538 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99588 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99867 * 180.27382 * 9 7 6 11 11 H 1.08998 * 109.45877 * 34.75235 * 10 9 7 12 12 C 1.53038 * 109.45877 * 274.79812 * 10 9 7 13 13 C 1.53192 * 109.31231 * 178.61476 * 12 10 9 14 14 N 1.46926 * 108.77659 * 54.63100 * 13 12 10 15 15 C 1.36940 * 120.63090 * 126.37110 * 14 13 12 16 16 H 1.08003 * 119.99845 * 209.03336 * 15 14 13 17 17 C 1.38807 * 120.00152 * 29.03324 * 15 14 13 18 18 N 1.31617 * 119.99905 * 15.01783 * 17 15 14 19 19 Si 1.86798 * 120.00330 * 195.01361 * 17 15 14 20 20 H 1.48495 * 109.47054 * 89.99858 * 19 17 15 21 21 H 1.48498 * 109.47203 * 210.00462 * 19 17 15 22 22 H 1.48508 * 109.46835 * 330.00341 * 19 17 15 23 23 C 1.46924 * 118.73794 * 306.39418 * 14 13 12 24 24 H 1.08996 * 109.70515 * 293.74847 * 23 14 13 25 25 C 1.53006 * 109.58780 * 173.39500 * 23 14 13 26 26 C 1.53038 * 109.45916 * 154.72816 * 10 9 7 27 27 H 1.09000 * 109.46773 * 300.00066 * 1 2 3 28 28 H 1.08998 * 109.46735 * 60.00308 * 1 2 3 29 29 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 30 30 H 0.97005 * 120.00218 * 359.97438 * 5 3 2 31 31 H 1.08993 * 109.47171 * 59.99576 * 6 5 3 32 32 H 1.09005 * 109.46619 * 299.99216 * 6 5 3 33 33 H 0.96997 * 120.00326 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.49621 * 298.56321 * 12 10 9 35 35 H 1.08999 * 109.50158 * 58.66315 * 12 10 9 36 36 H 1.09005 * 109.58641 * 294.84631 * 13 12 10 37 37 H 1.08996 * 109.59121 * 174.41901 * 13 12 10 38 38 H 0.96994 * 120.00250 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46921 * 300.70884 * 25 23 14 40 40 H 1.08998 * 109.47329 * 60.70810 * 25 23 14 41 41 H 1.09000 * 109.47279 * 180.71270 * 25 23 14 42 42 H 1.08999 * 109.49505 * 301.33686 * 26 10 9 43 43 H 1.08989 * 109.49845 * 61.40065 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0743 2.5755 0.0000 7 6 5.5683 2.3780 -0.0001 8 8 6.0319 1.2573 -0.0001 9 7 6.3893 3.4469 -0.0001 10 6 7.8417 3.2549 -0.0063 11 1 8.0888 2.3719 -0.5957 12 6 8.3369 3.0643 1.4291 13 6 9.8506 2.8294 1.4159 14 7 10.4948 3.9373 0.6974 15 6 11.5075 4.6516 1.2801 16 1 11.6617 5.6866 1.0126 17 6 12.3360 4.0455 2.2145 18 7 12.3511 2.7343 2.3282 19 14 13.4295 5.0906 3.3105 20 1 12.6961 5.4385 4.5540 21 1 14.6566 4.3291 3.6561 22 1 13.8050 6.3352 2.5927 23 6 10.0315 4.2646 -0.6579 24 1 10.2659 3.4432 -1.3348 25 6 10.7225 5.5411 -1.1419 26 6 8.5157 4.4835 -0.6214 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9375 0.4566 -0.0005 31 1 3.7818 3.1320 0.8904 32 1 3.7811 3.1330 -0.8896 33 1 6.0186 4.3432 0.0003 34 1 8.1123 3.9569 2.0130 35 1 7.8390 2.2029 1.8744 36 1 10.0701 1.8892 0.9100 37 1 10.2236 2.7918 2.4394 38 1 12.9302 2.3107 2.9808 39 1 10.4909 6.3602 -0.4610 40 1 11.8007 5.3834 -1.1672 41 1 10.3680 5.7892 -2.1424 42 1 8.1451 4.6323 -1.6356 43 1 8.2890 5.3628 -0.0186 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674120484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:48 Heat of formation + Delta-G solvation = -96.729817 kcal Electronic energy + Delta-G solvation = -24563.033416 eV Core-core repulsion = 20837.063584 eV Total energy + Delta-G solvation = -3725.969832 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.78008 -39.84674 -37.85714 -36.83938 -34.98498 -34.55663 -32.48490 -31.50633 -29.88012 -28.68265 -27.05651 -26.31774 -24.71449 -22.24888 -21.70837 -21.09586 -20.23176 -19.60541 -19.00769 -17.26555 -16.90995 -16.80415 -16.24577 -16.06332 -15.53026 -15.19923 -14.63721 -14.30001 -14.05970 -13.88100 -13.70889 -13.41124 -13.23923 -13.04773 -12.80846 -12.51544 -12.34828 -11.63697 -11.26616 -11.15908 -11.06256 -10.97903 -10.94907 -10.90769 -10.69683 -10.34603 -10.21398 -10.09063 -10.00108 -9.78610 -9.58777 -9.42982 -8.83509 -8.45469 -6.67526 -5.78946 -3.23334 1.81426 2.47310 2.57402 3.17196 3.36760 3.43449 3.44655 4.02201 4.47234 4.54960 4.84451 4.91645 5.00538 5.02969 5.18905 5.21567 5.33058 5.39802 5.52712 5.71946 5.80763 5.93463 6.06174 6.11164 6.17558 6.28082 6.33629 6.38164 6.45832 6.58768 6.74206 6.79604 6.99177 7.06320 7.11559 7.34872 7.49145 7.67414 7.80664 8.03506 8.13874 8.44909 9.20428 9.83833 10.40316 11.29666 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.031589 B = 0.002702 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.169187 B =10359.797940 C =10801.142938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.651 3.349 4 O -0.576 6.576 5 N -0.696 5.696 6 C 0.117 3.883 7 C 0.506 3.494 8 O -0.535 6.535 9 N -0.716 5.716 10 C 0.150 3.850 11 H 0.083 0.917 12 C -0.147 4.147 13 C 0.174 3.826 14 N -0.588 5.588 15 C -0.251 4.251 16 H 0.071 0.929 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.171 3.829 24 H 0.027 0.973 25 C -0.136 4.136 26 C -0.134 4.134 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.420 0.580 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.091 0.909 38 H 0.254 0.746 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.993 -0.641 -5.784 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.403 3.597 4 O -0.465 6.465 5 N -0.359 5.359 6 C -0.009 4.009 7 C 0.290 3.710 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.047 3.953 11 H 0.101 0.899 12 C -0.187 4.187 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.381 4.381 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.064 3.936 24 H 0.045 0.955 25 C -0.193 4.193 26 C -0.174 4.174 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.259 0.741 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.233 0.767 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.038 0.962 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.898 -1.081 -5.682 19.763 hybrid contribution 0.433 0.595 0.677 0.999 sum -18.465 -0.486 -5.005 19.137 Atomic orbital electron populations 1.23218 0.74192 1.03575 1.02779 1.86260 1.24304 1.30776 1.86995 1.17965 0.83085 0.82280 0.76355 1.91004 1.64716 1.34829 1.55967 1.44218 1.03234 1.10584 1.77832 1.21058 0.89894 0.84773 1.05208 1.20305 0.88215 0.85607 0.76872 1.90733 1.77140 1.23623 1.49695 1.46231 1.07900 1.08438 1.74042 1.21125 0.76269 0.99415 0.98462 0.89858 1.22582 1.00955 1.00685 0.94513 1.20767 0.85701 0.89267 0.99485 1.44175 1.38986 1.37510 1.10426 1.19182 1.06149 0.93034 1.19699 0.91162 1.25104 0.97658 0.95264 1.01649 1.70009 1.40728 1.07496 1.36494 0.86304 0.79941 0.79585 0.80997 1.21520 1.21807 1.20456 1.20355 0.89631 0.95364 0.88298 0.95533 1.21796 1.01495 0.97666 0.98361 1.22391 0.98927 0.96856 0.99250 0.91760 0.91790 0.87871 0.74133 0.88001 0.88053 0.76734 0.92564 0.92860 0.96161 0.89077 0.93620 0.92732 0.91859 0.94281 0.92590 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -3.91 10.62 -40.31 -0.43 -4.33 16 3 C 0.65 7.90 8.75 54.05 0.47 8.37 16 4 O -0.58 -8.20 16.13 -19.28 -0.31 -8.51 16 5 N -0.70 -7.80 5.53 -66.47 -0.37 -8.17 16 6 C 0.12 1.17 6.15 -5.19 -0.03 1.14 16 7 C 0.51 6.46 7.87 -10.98 -0.09 6.38 16 8 O -0.53 -8.88 15.33 5.56 0.09 -8.79 16 9 N -0.72 -8.77 5.08 -53.77 -0.27 -9.05 16 10 C 0.15 2.42 2.42 -67.89 -0.16 2.25 16 11 H 0.08 1.52 7.57 -51.93 -0.39 1.13 16 12 C -0.15 -2.77 5.65 -26.61 -0.15 -2.92 16 13 C 0.17 4.08 5.29 -3.71 -0.02 4.06 16 14 N -0.59 -13.96 2.99 -164.77 -0.49 -14.45 16 15 C -0.25 -6.53 8.61 -15.06 -0.13 -6.66 16 16 H 0.07 1.78 6.20 -52.48 -0.33 1.45 16 17 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 18 N -0.90 -25.83 11.14 55.49 0.62 -25.21 16 19 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.17 3.34 3.50 -67.60 -0.24 3.10 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 C -0.14 -2.40 7.94 37.16 0.30 -2.11 16 26 C -0.13 -2.09 4.84 -26.61 -0.13 -2.22 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.42 4.76 7.55 -40.82 -0.31 4.46 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.40 3.65 8.60 -40.82 -0.35 3.30 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.05 0.97 7.40 -51.93 -0.38 0.59 16 40 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -32.39 351.29 -6.78 -39.18 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.68 Total: 4.96 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 0.80 Total: 12.82 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.52 Total: -56.88 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.65 Total: -21.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.39 -6.78 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674120484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.554 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds