Wall clock time and date at job start Fri Apr 10 2020 17:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34631 * 117.00393 * 2 1 4 4 O 1.21513 * 119.99893 * 359.97438 * 3 2 1 5 5 N 1.34772 * 120.00511 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00302 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47337 * 179.97438 * 6 5 3 8 8 O 1.21286 * 119.99739 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00142 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99789 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.46087 * 324.97318 * 10 9 7 12 12 C 1.53043 * 109.44633 * 84.94421 * 10 9 7 13 13 C 1.52765 * 109.38080 * 181.25187 * 12 10 9 14 14 N 1.46922 * 109.00869 * 305.58495 * 13 12 10 15 15 C 1.36940 * 120.63034 * 233.58321 * 14 13 12 16 16 H 1.07998 * 119.99798 * 149.97586 * 15 14 13 17 17 C 1.38810 * 119.99822 * 330.25114 * 15 14 13 18 18 N 1.31613 * 119.99993 * 344.24279 * 17 15 14 19 19 Si 1.86797 * 119.99729 * 164.23873 * 17 15 14 20 20 H 1.48498 * 109.47286 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47054 * 120.00186 * 19 17 15 22 22 H 1.48509 * 109.47234 * 239.99943 * 19 17 15 23 23 C 1.46923 * 118.73869 * 53.31150 * 14 13 12 24 24 H 1.08999 * 109.59296 * 66.57034 * 23 14 13 25 25 C 1.53004 * 109.58930 * 186.85785 * 23 14 13 26 26 C 1.53045 * 109.45765 * 204.99757 * 10 9 7 27 27 H 1.09004 * 109.47331 * 299.99936 * 1 2 3 28 28 H 1.09007 * 109.47238 * 60.00291 * 1 2 3 29 29 H 1.09002 * 109.47494 * 180.02562 * 1 2 3 30 30 H 0.96999 * 119.99747 * 0.02562 * 5 3 2 31 31 H 1.09004 * 109.47039 * 60.00680 * 6 5 3 32 32 H 1.08999 * 109.47556 * 300.00562 * 6 5 3 33 33 H 0.96997 * 120.00711 * 0.02562 * 9 7 6 34 34 H 1.09006 * 109.49539 * 301.32259 * 12 10 9 35 35 H 1.08995 * 109.49951 * 61.42657 * 12 10 9 36 36 H 1.09003 * 109.50587 * 185.70073 * 13 12 10 37 37 H 1.08998 * 109.42865 * 65.41864 * 13 12 10 38 38 H 0.97006 * 120.00035 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46923 * 59.99638 * 25 23 14 40 40 H 1.08992 * 109.47317 * 179.97438 * 25 23 14 41 41 H 1.09001 * 109.46661 * 299.99948 * 25 23 14 42 42 H 1.09002 * 109.49492 * 58.68446 * 26 10 9 43 43 H 1.08993 * 109.52474 * 298.60041 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1995 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.0742 2.5754 0.0000 7 6 5.5683 2.3779 0.0013 8 8 6.0318 1.2571 0.0022 9 7 6.3893 3.4467 0.0016 10 6 7.8417 3.2547 0.0024 11 1 8.0911 2.3728 0.5925 12 6 8.3309 3.0616 -1.4348 13 6 9.8409 2.8304 -1.4296 14 7 10.4918 3.9361 -0.7137 15 6 11.5020 4.6494 -1.3019 16 1 11.6497 5.6881 -1.0457 17 6 12.3326 4.0389 -2.2316 18 7 12.3630 2.7264 -2.3251 19 14 13.4069 5.0802 -3.3500 20 1 13.1887 6.5176 -3.0480 21 1 14.8341 4.7375 -3.1247 22 1 13.0514 4.8131 -4.7669 23 6 10.0342 4.2658 0.6430 24 1 10.2735 3.4450 1.3190 25 6 10.7270 5.5432 1.1218 26 6 8.5182 4.4845 0.6124 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 3.9374 0.4566 0.0005 31 1 3.7811 3.1329 0.8895 32 1 3.7817 3.1319 -0.8904 33 1 6.0187 4.3431 0.0013 34 1 7.8312 2.1993 -1.8764 35 1 8.1039 3.9531 -2.0193 36 1 10.2071 2.7936 -2.4556 37 1 10.0619 1.8891 -0.9265 38 1 12.9431 2.2998 -2.9750 39 1 10.4823 6.3638 0.4474 40 1 10.3859 5.7863 2.1280 41 1 11.8061 5.3897 1.1307 42 1 8.1518 4.6350 1.6279 43 1 8.2894 5.3629 0.0091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674120485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:51 Heat of formation + Delta-G solvation = -122.220839 kcal Electronic energy + Delta-G solvation = -24564.352864 eV Core-core repulsion = 20837.277658 eV Total energy + Delta-G solvation = -3727.075206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69235 -40.95535 -39.34111 -37.71870 -36.24876 -35.64396 -34.23174 -33.05232 -31.49623 -29.63294 -28.10738 -27.56907 -26.48337 -23.82088 -22.88116 -22.21584 -21.49054 -20.99208 -20.13292 -18.34219 -18.14915 -17.74171 -17.63982 -17.22931 -16.89107 -16.48851 -15.84692 -15.65966 -15.42766 -15.10290 -14.89357 -14.87764 -14.50812 -14.32938 -14.24027 -13.56424 -13.32289 -12.97124 -12.94954 -12.72498 -12.66716 -12.59631 -12.34620 -12.05616 -11.88206 -11.83527 -11.80773 -11.69545 -11.48885 -11.36135 -10.93947 -10.55454 -10.45044 -10.03808 -8.62716 -7.83074 -5.29323 1.01647 1.46919 1.47737 1.49473 1.58986 1.64342 2.14706 2.53459 3.24046 3.33269 3.55993 3.66313 3.90188 4.07332 4.27967 4.28850 4.29807 4.36256 4.39247 4.42026 4.63951 4.69986 4.73444 4.78991 4.83418 4.96641 4.99572 5.10006 5.11887 5.18736 5.30167 5.41820 5.48157 5.55864 5.58021 5.73606 5.75048 6.22332 6.44773 6.48971 7.15100 7.16782 7.18747 7.90823 8.43143 9.24480 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.031444 B = 0.002704 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.249276 B =10352.410918 C =10793.292157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.377 6.377 3 C 0.651 3.349 4 O -0.599 6.599 5 N -0.697 5.697 6 C 0.125 3.875 7 C 0.509 3.491 8 O -0.576 6.576 9 N -0.701 5.701 10 C 0.162 3.838 11 H 0.060 0.940 12 C -0.131 4.131 13 C 0.183 3.817 14 N -0.603 5.603 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.058 4.058 18 N -0.941 5.941 19 Si 0.962 3.038 20 H -0.261 1.261 21 H -0.297 1.297 22 H -0.295 1.295 23 C 0.158 3.842 24 H 0.011 0.989 25 C -0.127 4.127 26 C -0.118 4.118 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.419 0.581 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.420 0.580 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.052 0.948 37 H -0.013 1.013 38 H 0.246 0.754 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.092 0.908 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.218 1.428 6.798 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.291 6.291 3 C 0.404 3.596 4 O -0.491 6.491 5 N -0.359 5.359 6 C -0.001 4.001 7 C 0.295 3.705 8 O -0.455 6.455 9 N -0.352 5.352 10 C 0.058 3.942 11 H 0.078 0.922 12 C -0.171 4.171 13 C 0.056 3.944 14 N -0.327 5.327 15 C -0.375 4.375 16 H 0.097 0.903 17 C -0.253 4.253 18 N -0.588 5.588 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.224 1.224 22 H -0.223 1.223 23 C 0.052 3.948 24 H 0.029 0.971 25 C -0.185 4.185 26 C -0.158 4.158 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.257 0.743 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.257 0.743 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.005 0.995 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.175 1.044 6.724 22.241 hybrid contribution 1.058 -0.118 -0.945 1.424 sum -20.117 0.926 5.778 20.951 Atomic orbital electron populations 1.23543 0.72369 1.05709 1.02865 1.86271 1.26132 1.30001 1.86653 1.18047 0.83147 0.82419 0.76030 1.90985 1.65200 1.35620 1.57257 1.44294 1.03120 1.11024 1.77469 1.21115 0.87209 0.84625 1.07144 1.20758 0.89387 0.84809 0.75520 1.90735 1.78059 1.25346 1.51398 1.45867 1.06036 1.09649 1.73675 1.20695 0.78643 0.99076 0.95828 0.92174 1.22242 0.97274 1.00654 0.96952 1.20348 0.88862 0.88383 0.96803 1.44425 1.38825 1.37256 1.12231 1.19562 1.05748 0.93263 1.18969 0.90260 1.25867 0.99581 0.96159 1.03645 1.70204 1.41920 1.09101 1.37543 0.85281 0.77959 0.79171 0.78521 1.18521 1.22450 1.22255 1.20659 0.92684 0.95783 0.85695 0.97098 1.21717 0.99815 0.96399 1.00560 1.22189 0.95407 0.96551 1.01623 0.91636 0.91772 0.84794 0.74300 0.85718 0.86238 0.74260 0.93429 0.91856 0.92982 0.99523 0.94485 0.92611 0.90405 0.94311 0.88967 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 10.56 113.37 1.20 1.80 16 2 O -0.38 -7.43 10.61 -55.40 -0.59 -8.02 16 3 C 0.65 14.75 8.75 129.79 1.14 15.89 16 4 O -0.60 -15.98 16.13 19.80 0.32 -15.66 16 5 N -0.70 -14.44 5.53 -594.63 -3.29 -17.73 16 6 C 0.12 2.14 6.15 85.63 0.53 2.67 16 7 C 0.51 11.93 7.86 87.66 0.69 12.62 16 8 O -0.58 -18.73 15.33 -3.05 -0.05 -18.77 16 9 N -0.70 -15.08 5.08 -442.38 -2.25 -17.33 16 10 C 0.16 4.96 2.42 45.02 0.11 5.07 16 11 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 12 C -0.13 -4.92 5.63 30.53 0.17 -4.75 16 13 C 0.18 8.90 5.26 86.22 0.45 9.35 16 14 N -0.60 -28.94 2.99 -676.05 -2.02 -30.96 16 15 C -0.25 -12.82 8.57 84.03 0.72 -12.10 16 16 H 0.08 3.94 6.24 -2.91 -0.02 3.92 16 17 C -0.06 -3.20 4.93 84.86 0.42 -2.78 16 18 N -0.94 -56.28 11.24 21.65 0.24 -56.03 16 19 Si 0.96 44.47 29.58 68.60 2.03 46.50 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 C 0.16 5.98 3.50 44.98 0.16 6.14 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 C -0.13 -4.21 7.95 71.98 0.57 -3.64 16 26 C -0.12 -3.31 4.84 30.68 0.15 -3.16 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 29 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.42 9.10 7.55 -92.71 -0.70 8.40 16 31 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.42 5.82 8.60 -92.71 -0.80 5.02 16 34 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.05 2.89 6.15 -2.39 -0.01 2.88 16 37 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 39 H 0.05 1.82 7.44 -2.39 -0.02 1.80 16 40 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 1.45 7.63 -2.39 -0.02 1.43 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -73.43 351.43 0.23 -73.20 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -0.47 Total: 17.72 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 6.30 Total: 27.09 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -7.31 Total: -122.05 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -0.32 Total: -42.45 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.43 0.23 -73.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674120485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.025 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds