Wall clock time and date at job start Fri Apr 10 2020 17:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00051 * 2 1 4 4 H 1.07998 * 119.99860 * 202.92537 * 3 2 1 5 5 C 1.38811 * 120.00025 * 22.92763 * 3 2 1 6 6 N 1.31621 * 119.99794 * 15.95814 * 5 3 2 7 7 Si 1.86802 * 120.00319 * 195.95826 * 5 3 2 8 8 H 1.48496 * 109.46754 * 59.99607 * 7 5 3 9 9 H 1.48492 * 109.47439 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46518 * 300.00038 * 7 5 3 11 11 C 1.46499 * 119.99900 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47168 * 269.99764 * 11 2 1 13 13 H 1.09004 * 109.46975 * 305.00306 * 12 11 2 14 14 O 1.42892 * 109.47333 * 65.00070 * 12 11 2 15 15 C 1.53004 * 109.47322 * 185.00329 * 12 11 2 16 16 N 1.46501 * 109.47212 * 180.02562 * 15 12 11 17 17 C 1.46499 * 119.99491 * 269.99748 * 16 15 12 18 18 C 1.34775 * 120.00135 * 89.99432 * 16 15 12 19 19 O 1.21277 * 119.99829 * 4.89398 * 18 16 15 20 20 C 1.50699 * 119.99857 * 184.88957 * 18 16 15 21 21 H 1.08995 * 110.43617 * 329.06354 * 20 18 16 22 22 C 1.54624 * 110.48609 * 206.52130 * 20 18 16 23 23 C 1.54485 * 101.76245 * 265.98999 * 22 20 18 24 24 N 1.46759 * 105.47675 * 334.58131 * 23 22 20 25 25 C 1.34419 * 111.29532 * 17.28497 * 24 23 22 26 26 O 1.21290 * 124.93783 * 179.30527 * 25 24 23 27 27 H 1.09003 * 109.47205 * 275.16972 * 1 2 3 28 28 H 1.09001 * 109.47287 * 35.16777 * 1 2 3 29 29 H 1.09000 * 109.47286 * 155.17266 * 1 2 3 30 30 H 0.97007 * 119.99763 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.47077 * 150.00290 * 11 2 1 32 32 H 1.08996 * 109.47601 * 29.99776 * 11 2 1 33 33 H 0.96699 * 114.00128 * 59.99251 * 14 12 11 34 34 H 1.08996 * 109.47250 * 59.99740 * 15 12 11 35 35 H 1.08998 * 109.46713 * 299.99748 * 15 12 11 36 36 H 1.08995 * 109.47354 * 269.52870 * 17 16 15 37 37 H 1.09002 * 109.47639 * 29.53534 * 17 16 15 38 38 H 1.09008 * 109.46855 * 149.53668 * 17 16 15 39 39 H 1.09001 * 110.97107 * 147.87633 * 22 20 18 40 40 H 1.09003 * 111.00294 * 24.11865 * 22 20 18 41 41 H 1.09006 * 110.24202 * 215.58360 * 23 22 20 42 42 H 1.09005 * 110.32170 * 93.62810 * 23 22 20 43 43 H 0.96994 * 124.35328 * 197.01716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1656 1.2228 -0.3643 5 6 1.5378 2.3406 0.4683 6 7 0.4419 2.2573 1.1924 7 14 2.2699 4.0126 0.0709 8 1 2.3080 4.1987 -1.4019 9 1 1.4343 5.0769 0.6824 10 1 3.6491 4.0911 0.6156 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 2.9642 -0.9139 1.9811 14 8 1.2061 -1.9944 2.0806 15 6 3.3238 -2.9687 1.4431 16 7 3.5675 -3.3926 2.8241 17 6 4.7318 -2.8822 3.5522 18 6 2.7206 -4.2519 3.4247 19 8 1.8077 -4.7431 2.7953 20 6 2.9080 -4.6024 4.8783 21 1 3.9640 -4.5647 5.1458 22 6 2.3238 -6.0025 5.1771 23 6 0.8995 -5.6524 5.6621 24 7 0.9896 -4.2849 6.1873 25 6 2.1024 -3.6679 5.7538 26 8 2.4161 -2.5286 6.0269 27 1 -0.3634 0.0926 1.0235 28 1 -0.3634 0.8401 -0.5919 29 1 -0.3634 -0.9327 -0.4315 30 1 0.0141 3.0643 1.5194 31 1 3.1499 -1.1382 -0.5143 32 1 1.6084 -2.0282 -0.5147 33 1 0.6955 -2.6956 1.6531 34 1 4.2745 -2.7526 0.9558 35 1 2.8121 -3.7658 0.9037 36 1 5.5786 -3.5510 3.3980 37 1 4.9829 -1.8873 3.1845 38 1 4.5002 -2.8287 4.6160 39 1 2.8912 -6.5026 5.9620 40 1 2.2895 -6.6123 4.2742 41 1 0.5898 -6.3393 6.4499 42 1 0.1960 -5.6915 4.8304 43 1 0.3291 -3.8773 6.7690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677165476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:35 Heat of formation + Delta-G solvation = -83.857242 kcal Electronic energy + Delta-G solvation = -25902.086802 eV Core-core repulsion = 22176.675166 eV Total energy + Delta-G solvation = -3725.411636 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05895 -39.04366 -37.17713 -36.32888 -35.22892 -34.42789 -31.83378 -31.22670 -29.64881 -28.00518 -26.90833 -25.75778 -25.27706 -22.74112 -21.84442 -21.03289 -20.42856 -18.98696 -17.77051 -17.41566 -16.77276 -16.23453 -15.91932 -15.40660 -14.91901 -14.74968 -14.62560 -14.36595 -13.91174 -13.78140 -13.50367 -13.27631 -13.09062 -12.95605 -12.81759 -12.71173 -12.32065 -11.78652 -11.67704 -11.59284 -11.36423 -11.02682 -10.77253 -10.63979 -10.33391 -10.24571 -10.07015 -9.92963 -9.88095 -9.75053 -9.50071 -9.18442 -8.50794 -8.30138 -6.59836 -5.62311 -3.08303 2.21525 2.74535 3.09544 3.31190 3.43697 3.49027 3.50243 4.14306 4.22118 4.39186 4.57089 4.71935 4.86864 5.12707 5.19365 5.23406 5.25173 5.32327 5.44031 5.54453 5.55902 5.60953 5.75695 5.79772 5.84454 5.95049 6.12324 6.18141 6.56249 6.62663 6.64869 6.87049 6.87602 6.92689 7.42970 7.44883 7.85585 7.95151 8.13002 8.19036 8.48124 8.54201 9.31770 9.96304 10.46447 11.41408 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.004015 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.549436 B = 6971.829779 C = 7149.114456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.590 5.590 3 C -0.263 4.263 4 H 0.066 0.934 5 C 0.005 3.995 6 N -0.897 5.897 7 Si 0.901 3.099 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.126 3.874 12 C 0.071 3.929 13 H 0.095 0.905 14 O -0.539 6.539 15 C 0.079 3.921 16 N -0.598 5.598 17 C 0.072 3.928 18 C 0.540 3.460 19 O -0.533 6.533 20 C -0.153 4.153 21 H 0.123 0.877 22 C -0.114 4.114 23 C 0.103 3.897 24 N -0.727 5.727 25 C 0.536 3.464 26 O -0.513 6.513 27 H 0.037 0.963 28 H 0.034 0.966 29 H -0.005 1.005 30 H 0.252 0.748 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.358 0.642 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 -19.731 7.864 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.312 5.312 3 C -0.392 4.392 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.540 5.540 7 Si 0.731 3.269 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C -0.003 4.003 12 C 0.007 3.993 13 H 0.113 0.887 14 O -0.342 6.342 15 C -0.044 4.044 16 N -0.330 5.330 17 C -0.071 4.071 18 C 0.327 3.673 19 O -0.410 6.410 20 C -0.178 4.178 21 H 0.141 0.859 22 C -0.153 4.153 23 C -0.022 4.022 24 N -0.383 5.383 25 C 0.320 3.680 26 O -0.387 6.387 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.014 0.986 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.203 0.797 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.844 -18.780 8.045 21.250 hybrid contribution 0.066 0.807 -0.128 0.820 sum 5.911 -17.972 7.916 20.509 Atomic orbital electron populations 1.20747 0.82444 0.94807 0.99740 1.43831 1.01912 1.00171 1.85264 1.19107 0.98589 0.85442 1.36088 0.91601 1.25029 0.98220 0.98410 0.97758 1.70109 1.21047 1.27133 1.35749 0.86394 0.78344 0.84164 0.77963 1.21136 1.21675 1.20973 1.21449 0.96424 0.89351 0.93063 1.23263 0.84328 0.93811 0.97865 0.88665 1.86678 1.32248 1.59122 1.56170 1.22507 1.01348 0.99126 0.81392 1.47640 1.26039 1.44685 1.14594 1.21917 0.87142 1.00132 0.97958 1.19525 0.81916 0.78752 0.87154 1.90643 1.31589 1.53325 1.65403 1.22176 1.03218 0.97664 0.94744 0.85911 1.22539 0.95129 0.94406 1.03181 1.22090 0.98112 0.82570 0.99380 1.46074 1.24514 1.16032 1.51665 1.20082 0.81919 0.86427 0.79575 1.90826 1.72127 1.16912 1.58862 0.94480 0.94754 0.98645 0.93780 0.93243 0.94211 0.79690 0.89994 0.89904 0.92665 0.90374 0.90420 0.89426 0.88194 0.90217 0.90054 0.74746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.39 8.64 59.84 0.52 4.91 16 2 N -0.59 -15.45 2.88 -181.12 -0.52 -15.98 16 3 C -0.26 -7.46 9.64 -15.06 -0.15 -7.60 16 4 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 5 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16 6 N -0.90 -27.61 10.88 55.49 0.60 -27.01 16 7 Si 0.90 22.54 29.58 -169.99 -5.03 17.51 16 8 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 9 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.13 2.62 5.37 -4.04 -0.02 2.59 16 12 C 0.07 1.40 3.48 -26.73 -0.09 1.31 16 13 H 0.10 2.22 8.14 -51.93 -0.42 1.79 16 14 O -0.54 -11.88 11.81 -37.24 -0.44 -12.32 16 15 C 0.08 1.19 5.17 -4.04 -0.02 1.17 16 16 N -0.60 -8.58 2.83 -181.57 -0.51 -9.09 16 17 C 0.07 0.84 9.97 59.85 0.60 1.43 16 18 C 0.54 7.87 6.20 -10.99 -0.07 7.81 16 19 O -0.53 -8.79 14.60 3.55 0.05 -8.74 16 20 C -0.15 -1.75 2.42 -91.78 -0.22 -1.97 16 21 H 0.12 1.13 6.54 -51.93 -0.34 0.79 16 22 C -0.11 -0.91 6.39 -25.10 -0.16 -1.07 16 23 C 0.10 0.85 7.63 -3.12 -0.02 0.83 16 24 N -0.73 -8.09 6.24 -59.19 -0.37 -8.46 16 25 C 0.54 7.73 7.70 -10.86 -0.08 7.65 16 26 O -0.51 -9.67 17.33 5.55 0.10 -9.57 16 27 H 0.04 1.08 7.33 -51.93 -0.38 0.70 16 28 H 0.03 0.95 7.42 -51.93 -0.39 0.56 16 29 H -0.01 -0.12 7.83 -51.93 -0.41 -0.52 16 30 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.05 0.96 8.03 -51.93 -0.42 0.54 16 32 H 0.04 0.75 7.86 -51.93 -0.41 0.35 16 33 H 0.36 7.08 8.61 45.56 0.39 7.47 16 34 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 35 H 0.08 1.23 7.36 -51.93 -0.38 0.85 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.95 8.07 -51.93 -0.42 0.54 16 38 H 0.08 0.94 5.63 -51.92 -0.29 0.65 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.81 7.49 -51.93 -0.39 0.42 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.41 4.06 8.96 -40.82 -0.37 3.69 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -37.35 351.22 -6.52 -43.87 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.87 Total: 7.37 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 0.19 Total: 17.12 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.80 Total: -60.54 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.29 Total: -30.63 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.35 -6.52 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677165476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.987 kcal (2) G-P(sol) polarization free energy of solvation -37.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds