Wall clock time and date at job start Fri Apr 10 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36939 * 120.00051 * 2 1 4 4 H 1.07998 * 119.99860 * 202.92537 * 3 2 1 5 5 C 1.38811 * 120.00025 * 22.92763 * 3 2 1 6 6 N 1.31621 * 119.99794 * 15.95814 * 5 3 2 7 7 Si 1.86802 * 120.00319 * 195.95826 * 5 3 2 8 8 H 1.48496 * 109.46754 * 59.99607 * 7 5 3 9 9 H 1.48492 * 109.47439 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46518 * 300.00038 * 7 5 3 11 11 C 1.46499 * 119.99900 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47168 * 269.99764 * 11 2 1 13 13 H 1.09004 * 109.46975 * 305.00306 * 12 11 2 14 14 O 1.42892 * 109.47333 * 65.00070 * 12 11 2 15 15 C 1.53004 * 109.47322 * 185.00329 * 12 11 2 16 16 N 1.46501 * 109.47212 * 180.02562 * 15 12 11 17 17 C 1.46499 * 119.99491 * 269.99748 * 16 15 12 18 18 C 1.34775 * 120.00135 * 89.99432 * 16 15 12 19 19 O 1.21277 * 119.99829 * 4.89398 * 18 16 15 20 20 C 1.50699 * 119.99857 * 184.88957 * 18 16 15 21 21 H 1.08995 * 110.43617 * 329.06354 * 20 18 16 22 22 C 1.54624 * 110.48609 * 206.52130 * 20 18 16 23 23 C 1.54485 * 101.76245 * 265.98999 * 22 20 18 24 24 N 1.46759 * 105.47675 * 334.58131 * 23 22 20 25 25 C 1.34419 * 111.29532 * 17.28497 * 24 23 22 26 26 O 1.21290 * 124.93783 * 179.30527 * 25 24 23 27 27 H 1.09003 * 109.47205 * 275.16972 * 1 2 3 28 28 H 1.09001 * 109.47287 * 35.16777 * 1 2 3 29 29 H 1.09000 * 109.47286 * 155.17266 * 1 2 3 30 30 H 0.97007 * 119.99763 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.47077 * 150.00290 * 11 2 1 32 32 H 1.08996 * 109.47601 * 29.99776 * 11 2 1 33 33 H 0.96699 * 114.00128 * 59.99251 * 14 12 11 34 34 H 1.08996 * 109.47250 * 59.99740 * 15 12 11 35 35 H 1.08998 * 109.46713 * 299.99748 * 15 12 11 36 36 H 1.08995 * 109.47354 * 269.52870 * 17 16 15 37 37 H 1.09002 * 109.47639 * 29.53534 * 17 16 15 38 38 H 1.09008 * 109.46855 * 149.53668 * 17 16 15 39 39 H 1.09001 * 110.97107 * 147.87633 * 22 20 18 40 40 H 1.09003 * 111.00294 * 24.11865 * 22 20 18 41 41 H 1.09006 * 110.24202 * 215.58360 * 23 22 20 42 42 H 1.09005 * 110.32170 * 93.62810 * 23 22 20 43 43 H 0.96994 * 124.35328 * 197.01716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1656 1.2228 -0.3643 5 6 1.5378 2.3406 0.4683 6 7 0.4419 2.2573 1.1924 7 14 2.2699 4.0126 0.0709 8 1 2.3080 4.1987 -1.4019 9 1 1.4343 5.0769 0.6824 10 1 3.6491 4.0911 0.6156 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 2.9642 -0.9139 1.9811 14 8 1.2061 -1.9944 2.0806 15 6 3.3238 -2.9687 1.4431 16 7 3.5675 -3.3926 2.8241 17 6 4.7318 -2.8822 3.5522 18 6 2.7206 -4.2519 3.4247 19 8 1.8077 -4.7431 2.7953 20 6 2.9080 -4.6024 4.8783 21 1 3.9640 -4.5647 5.1458 22 6 2.3238 -6.0025 5.1771 23 6 0.8995 -5.6524 5.6621 24 7 0.9896 -4.2849 6.1873 25 6 2.1024 -3.6679 5.7538 26 8 2.4161 -2.5286 6.0269 27 1 -0.3634 0.0926 1.0235 28 1 -0.3634 0.8401 -0.5919 29 1 -0.3634 -0.9327 -0.4315 30 1 0.0141 3.0643 1.5194 31 1 3.1499 -1.1382 -0.5143 32 1 1.6084 -2.0282 -0.5147 33 1 0.6955 -2.6956 1.6531 34 1 4.2745 -2.7526 0.9558 35 1 2.8121 -3.7658 0.9037 36 1 5.5786 -3.5510 3.3980 37 1 4.9829 -1.8873 3.1845 38 1 4.5002 -2.8287 4.6160 39 1 2.8912 -6.5026 5.9620 40 1 2.2895 -6.6123 4.2742 41 1 0.5898 -6.3393 6.4499 42 1 0.1960 -5.6915 4.8304 43 1 0.3291 -3.8773 6.7690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677165476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:34 Heat of formation + Delta-G solvation = -115.158270 kcal Electronic energy + Delta-G solvation = -25903.444116 eV Core-core repulsion = 22176.675166 eV Total energy + Delta-G solvation = -3726.768950 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06884 -40.21934 -38.73705 -37.45567 -36.71394 -36.08398 -33.32971 -32.73319 -31.13624 -28.97640 -28.15273 -27.80506 -26.71305 -24.14262 -22.90687 -22.34668 -22.07238 -20.03843 -18.84912 -18.74682 -18.41610 -17.70073 -17.14200 -16.73432 -16.56139 -16.07335 -15.96960 -15.81814 -15.44791 -15.06476 -14.74301 -14.71934 -14.45382 -14.22552 -13.91248 -13.70359 -13.65769 -13.31300 -13.14292 -12.74948 -12.70143 -12.55643 -12.35980 -12.24960 -12.18038 -12.04926 -12.01139 -11.81762 -11.27218 -11.16392 -10.86253 -10.59224 -10.09857 -9.60401 -8.70190 -7.81944 -5.30377 1.10980 1.43701 1.47036 1.53772 1.67048 2.06738 2.42573 2.50841 3.29064 3.29832 3.41638 3.48149 3.62860 3.74316 3.99732 4.12316 4.20624 4.21832 4.24127 4.46966 4.51804 4.57148 4.62357 4.74583 4.75352 4.82885 4.90670 4.96727 4.98080 5.13143 5.25048 5.27794 5.45292 5.62776 5.74500 5.75453 5.92588 6.31743 6.34100 6.95177 7.08342 7.12247 7.13740 7.87400 8.32400 9.20857 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.004015 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.549436 B = 6971.829779 C = 7149.114456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.609 5.609 3 C -0.268 4.268 4 H 0.076 0.924 5 C -0.056 4.056 6 N -0.937 5.937 7 Si 0.969 3.031 8 H -0.274 1.274 9 H -0.298 1.298 10 H -0.273 1.273 11 C 0.123 3.877 12 C 0.080 3.920 13 H 0.053 0.947 14 O -0.565 6.565 15 C 0.093 3.907 16 N -0.605 5.605 17 C 0.069 3.931 18 C 0.531 3.469 19 O -0.557 6.557 20 C -0.150 4.150 21 H 0.147 0.853 22 C -0.104 4.104 23 C 0.097 3.903 24 N -0.720 5.720 25 C 0.522 3.478 26 O -0.572 6.572 27 H -0.001 1.001 28 H 0.008 0.992 29 H 0.029 0.971 30 H 0.245 0.755 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.366 0.634 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.823 -22.128 7.567 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.331 5.331 3 C -0.398 4.398 4 H 0.094 0.906 5 C -0.252 4.252 6 N -0.583 5.583 7 Si 0.797 3.203 8 H -0.200 1.200 9 H -0.225 1.225 10 H -0.199 1.199 11 C -0.004 4.004 12 C 0.017 3.983 13 H 0.072 0.928 14 O -0.370 6.370 15 C -0.031 4.031 16 N -0.336 5.336 17 C -0.073 4.073 18 C 0.318 3.682 19 O -0.435 6.435 20 C -0.174 4.174 21 H 0.165 0.835 22 C -0.142 4.142 23 C -0.026 4.026 24 N -0.374 5.374 25 C 0.307 3.693 26 O -0.451 6.451 27 H 0.017 0.983 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.213 0.787 34 H 0.129 0.871 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.085 0.915 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.699 -21.255 7.741 23.895 hybrid contribution -0.534 1.448 -0.033 1.543 sum 7.164 -19.807 7.707 22.429 Atomic orbital electron populations 1.20415 0.83097 0.95326 0.97179 1.44079 1.01973 1.01609 1.85433 1.19551 0.98913 0.86548 1.34773 0.90603 1.25872 0.98951 1.02192 0.98149 1.70315 1.22922 1.27425 1.37651 0.85318 0.77657 0.79345 0.78007 1.20020 1.22471 1.19882 1.21658 0.97107 0.87648 0.94003 1.22985 0.84180 0.95169 0.95930 0.92838 1.86648 1.33565 1.59750 1.57033 1.22245 1.01703 0.96596 0.82538 1.47781 1.26841 1.44505 1.14518 1.22072 0.87435 1.00608 0.97206 1.20093 0.81358 0.78412 0.88311 1.90621 1.32355 1.54301 1.66262 1.22236 1.04509 0.98814 0.91865 0.83545 1.22659 0.94709 0.92363 1.04477 1.22356 0.98450 0.81522 1.00252 1.46244 1.23454 1.17113 1.50602 1.20677 0.82873 0.86113 0.79670 1.90787 1.73716 1.19411 1.61172 0.98314 0.97294 0.95265 0.94626 0.91321 0.91851 0.78742 0.87061 0.89150 0.88608 0.91397 0.91106 0.85737 0.87948 0.86197 0.91467 0.74377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.91 8.64 127.77 1.10 11.02 16 2 N -0.61 -31.97 2.88 -726.95 -2.10 -34.07 16 3 C -0.27 -15.26 9.64 84.03 0.81 -14.45 16 4 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 5 C -0.06 -3.34 5.04 84.86 0.43 -2.91 16 6 N -0.94 -59.81 10.88 21.65 0.24 -59.57 16 7 Si 0.97 47.02 29.58 68.60 2.03 49.05 16 8 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 9 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 11 C 0.12 4.95 5.37 86.38 0.46 5.41 16 12 C 0.08 3.15 3.48 30.60 0.11 3.26 16 13 H 0.05 2.56 8.14 -2.38 -0.02 2.54 16 14 O -0.57 -25.37 11.81 -147.06 -1.74 -27.10 16 15 C 0.09 2.61 5.17 86.38 0.45 3.06 16 16 N -0.61 -16.46 2.83 -846.76 -2.39 -18.86 16 17 C 0.07 1.50 9.97 127.77 1.27 2.77 16 18 C 0.53 14.75 6.20 87.66 0.54 15.29 16 19 O -0.56 -17.72 14.60 -1.10 -0.02 -17.74 16 20 C -0.15 -3.15 2.42 -11.55 -0.03 -3.18 16 21 H 0.15 2.31 6.54 -2.39 -0.02 2.29 16 22 C -0.10 -1.32 6.39 31.65 0.20 -1.12 16 23 C 0.10 1.38 7.63 86.83 0.66 2.04 16 24 N -0.72 -15.40 6.24 -459.78 -2.87 -18.27 16 25 C 0.52 14.92 7.70 87.90 0.68 15.60 16 26 O -0.57 -22.29 17.33 -3.06 -0.05 -22.34 16 27 H 0.00 -0.09 7.33 -2.39 -0.02 -0.11 16 28 H 0.01 0.48 7.42 -2.39 -0.02 0.46 16 29 H 0.03 1.32 7.83 -2.39 -0.02 1.30 16 30 H 0.24 15.26 8.31 -92.70 -0.77 14.48 16 31 H 0.07 2.50 8.03 -2.39 -0.02 2.48 16 32 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 33 H 0.37 14.58 8.61 -74.06 -0.64 13.94 16 34 H 0.11 2.48 8.07 -2.39 -0.02 2.47 16 35 H 0.09 2.46 7.36 -2.39 -0.02 2.44 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 38 H 0.07 1.66 5.63 -2.38 -0.01 1.64 16 39 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 1.33 7.49 -2.39 -0.02 1.31 16 41 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.42 8.05 8.96 -92.71 -0.83 7.22 16 Total: -1.00 -85.19 351.22 -0.64 -85.83 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -0.43 Total: 26.28 kcal Atomic # 6 Polarization: 30.10 SS G_CDS: 6.69 Total: 36.79 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -7.12 Total: -130.77 kcal Atomic # 8 Polarization: -65.38 SS G_CDS: -1.81 Total: -67.19 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -85.19 -0.64 -85.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677165476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.328 kcal (2) G-P(sol) polarization free energy of solvation -85.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds