Wall clock time and date at job start Fri Apr 10 2020 17:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36933 * 120.00418 * 2 1 4 4 H 1.08002 * 119.99761 * 323.59864 * 3 2 1 5 5 C 1.38816 * 119.99941 * 143.59534 * 3 2 1 6 6 N 1.31612 * 119.99619 * 160.07221 * 5 3 2 7 7 Si 1.86799 * 120.00012 * 340.07227 * 5 3 2 8 8 H 1.48498 * 109.47262 * 95.39142 * 7 5 3 9 9 H 1.48499 * 109.47062 * 215.39192 * 7 5 3 10 10 H 1.48498 * 109.47176 * 335.39357 * 7 5 3 11 11 C 1.46499 * 119.99214 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47178 * 90.00351 * 11 2 1 13 13 H 1.09004 * 109.47047 * 59.99863 * 12 11 2 14 14 O 1.42901 * 109.47190 * 299.99387 * 12 11 2 15 15 C 1.53006 * 109.47168 * 179.97438 * 12 11 2 16 16 N 1.46504 * 109.46891 * 184.99832 * 15 12 11 17 17 C 1.46500 * 119.99878 * 270.00041 * 16 15 12 18 18 C 1.34774 * 119.99678 * 90.00390 * 16 15 12 19 19 O 1.21273 * 120.00327 * 4.34107 * 18 16 15 20 20 C 1.50702 * 119.99656 * 184.33831 * 18 16 15 21 21 H 1.09001 * 110.43386 * 331.23539 * 20 18 16 22 22 C 1.54627 * 110.48596 * 208.69155 * 20 18 16 23 23 C 1.54474 * 101.76503 * 265.98863 * 22 20 18 24 24 N 1.46762 * 105.47304 * 334.58304 * 23 22 20 25 25 C 1.34419 * 111.30284 * 17.28283 * 24 23 22 26 26 O 1.21278 * 124.93963 * 179.30408 * 25 24 23 27 27 H 1.08993 * 109.47181 * 266.07725 * 1 2 3 28 28 H 1.09010 * 109.46497 * 26.07381 * 1 2 3 29 29 H 1.08998 * 109.47597 * 146.07086 * 1 2 3 30 30 H 0.97005 * 119.99583 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47574 * 329.99513 * 11 2 1 32 32 H 1.09001 * 109.46982 * 209.99932 * 11 2 1 33 33 H 0.96700 * 114.00126 * 300.00768 * 14 12 11 34 34 H 1.09002 * 109.46884 * 64.99709 * 15 12 11 35 35 H 1.08999 * 109.46959 * 304.99855 * 15 12 11 36 36 H 1.09004 * 109.47055 * 264.72695 * 17 16 15 37 37 H 1.09002 * 109.47246 * 24.72707 * 17 16 15 38 38 H 1.08993 * 109.46978 * 144.73254 * 17 16 15 39 39 H 1.09004 * 110.96536 * 147.86761 * 22 20 18 40 40 H 1.08999 * 111.00008 * 24.12395 * 22 20 18 41 41 H 1.09003 * 110.24251 * 215.58827 * 23 22 20 42 42 H 1.08992 * 110.24554 * 93.58863 * 23 22 20 43 43 H 0.97003 * 124.34759 * 197.01716 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7679 2.0299 -0.5551 5 6 3.3348 1.3030 0.7135 6 7 4.1868 2.2626 0.4210 7 14 3.7201 0.0989 2.0886 8 1 4.5695 -0.9992 1.5615 9 1 4.4429 0.8050 3.1768 10 1 2.4542 -0.4664 2.6207 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 1 3.0416 -0.9500 -1.9567 14 8 1.2038 -1.8804 -2.1170 15 6 3.2178 -3.0347 -1.4438 16 7 3.5662 -3.3967 -2.8200 17 6 2.6459 -4.2100 -3.6188 18 6 4.7333 -2.9817 -3.3511 19 8 5.5299 -2.3760 -2.6660 20 6 5.0484 -3.2703 -4.7963 21 1 4.5512 -4.1852 -5.1188 22 6 6.5764 -3.3823 -5.0050 23 6 6.9424 -1.9433 -5.4310 24 7 5.7183 -1.3853 -6.0176 25 6 4.6376 -2.1043 -5.6682 26 8 3.4994 -1.8558 -6.0052 27 1 -0.3633 -0.0703 1.0252 28 1 -0.3633 0.9232 -0.4517 29 1 -0.3634 -0.8526 -0.5736 30 1 5.0150 2.3443 0.9193 31 1 1.6083 -2.0286 0.5130 32 1 3.1498 -1.1388 0.5133 33 1 0.6265 -2.5431 -1.7138 34 1 2.5931 -3.8154 -1.0097 35 1 4.1285 -2.9284 -0.8544 36 1 2.9348 -5.2588 -3.5502 37 1 1.6309 -4.0872 -3.2408 38 1 2.6874 -3.8891 -4.6596 39 1 6.8108 -4.0948 -5.7960 40 1 7.0786 -3.6540 -4.0766 41 1 7.7416 -1.9610 -6.1720 42 1 7.2451 -1.3584 -4.5625 43 1 5.6919 -0.5965 -6.5816 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677165478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:39 Heat of formation + Delta-G solvation = -113.229188 kcal Electronic energy + Delta-G solvation = -26111.070732 eV Core-core repulsion = 22384.385433 eV Total energy + Delta-G solvation = -3726.685299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15006 -40.32462 -39.07297 -37.52272 -36.88939 -36.02111 -33.72812 -32.90664 -31.54382 -29.12888 -28.30869 -27.83751 -26.77540 -24.05435 -22.97236 -22.69768 -22.26211 -20.14490 -19.13489 -18.72678 -18.49532 -17.66042 -17.41570 -17.20084 -16.63826 -16.42375 -16.01598 -15.72850 -15.52076 -15.27330 -14.81116 -14.71891 -14.55587 -14.33335 -14.25232 -13.92746 -13.72284 -13.56304 -13.33186 -13.20036 -12.78553 -12.68471 -12.44871 -12.43498 -12.30977 -12.12943 -11.99640 -11.57915 -11.38689 -11.22380 -10.95362 -10.68824 -10.16503 -9.66793 -8.74433 -8.24868 -5.63273 1.01729 1.24008 1.34450 1.47046 1.55170 1.99040 2.36238 2.36505 2.96339 3.22731 3.33442 3.36629 3.45490 3.56481 3.91326 3.95687 4.05924 4.14842 4.25893 4.30875 4.40269 4.45035 4.58326 4.66042 4.69044 4.74726 4.80111 4.91807 4.98611 5.03748 5.07703 5.10434 5.17409 5.44405 5.67624 5.86308 5.87231 6.08283 6.25157 6.90898 6.98838 7.00739 7.05327 7.58279 7.97408 8.95636 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.005181 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.872654 B = 5402.647548 C = 5939.717478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.618 5.618 3 C -0.263 4.263 4 H 0.029 0.971 5 C -0.032 4.032 6 N -0.955 5.955 7 Si 0.958 3.042 8 H -0.274 1.274 9 H -0.306 1.306 10 H -0.248 1.248 11 C 0.107 3.893 12 C 0.095 3.905 13 H 0.033 0.967 14 O -0.554 6.554 15 C 0.088 3.912 16 N -0.601 5.601 17 C 0.073 3.927 18 C 0.514 3.486 19 O -0.572 6.572 20 C -0.144 4.144 21 H 0.157 0.843 22 C -0.106 4.106 23 C 0.094 3.906 24 N -0.720 5.720 25 C 0.521 3.479 26 O -0.566 6.566 27 H 0.019 0.981 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.035 0.965 33 H 0.381 0.619 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.057 0.943 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -22.059 -10.987 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.343 5.343 3 C -0.394 4.394 4 H 0.046 0.954 5 C -0.228 4.228 6 N -0.600 5.600 7 Si 0.786 3.214 8 H -0.201 1.201 9 H -0.235 1.235 10 H -0.171 1.171 11 C -0.019 4.019 12 C 0.032 3.968 13 H 0.052 0.948 14 O -0.361 6.361 15 C -0.036 4.036 16 N -0.331 5.331 17 C -0.069 4.069 18 C 0.302 3.698 19 O -0.451 6.451 20 C -0.168 4.168 21 H 0.175 0.825 22 C -0.143 4.143 23 C -0.029 4.029 24 N -0.374 5.374 25 C 0.306 3.694 26 O -0.445 6.445 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.230 0.770 34 H 0.148 0.852 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.115 0.885 41 H 0.143 0.857 42 H 0.075 0.925 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.749 -21.183 -11.072 24.059 hybrid contribution 0.263 0.739 0.734 1.075 sum 3.012 -20.443 -10.338 23.105 Atomic orbital electron populations 1.21168 0.81664 1.00327 0.98269 1.43987 1.02554 1.00936 1.86779 1.18690 1.05443 0.91129 1.24088 0.95363 1.26210 0.96860 0.99269 1.00451 1.70008 1.10096 1.37562 1.42309 0.85635 0.78488 0.78182 0.79098 1.20097 1.23507 1.17113 1.21920 0.96422 0.88621 0.94961 1.22545 0.84873 0.95112 0.94306 0.94829 1.86666 1.28853 1.64291 1.56275 1.22247 1.00909 0.97319 0.83125 1.47820 1.18739 1.52213 1.14378 1.22141 0.94113 0.94914 0.95684 1.20500 0.81609 0.78590 0.89137 1.90737 1.49278 1.42011 1.63081 1.22220 1.02597 1.00796 0.91236 0.82531 1.22677 0.89431 0.97161 1.05072 1.22360 0.86814 0.94413 0.99309 1.46259 1.08679 1.30962 1.51539 1.20666 0.84532 0.84575 0.79670 1.90765 1.21641 1.73339 1.58706 0.96241 0.95520 0.91242 0.92887 0.88948 0.94762 0.77045 0.85217 0.91188 0.88953 0.89178 0.91463 0.84937 0.88548 0.85738 0.92461 0.74221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.23 10.48 127.77 1.34 6.57 16 2 N -0.62 -30.70 2.44 -726.92 -1.77 -32.47 16 3 C -0.26 -16.27 9.94 84.04 0.83 -15.44 16 4 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 5 C -0.03 -2.02 5.35 84.86 0.45 -1.57 16 6 N -0.96 -64.29 13.97 21.65 0.30 -63.99 16 7 Si 0.96 48.52 24.81 68.60 1.70 50.22 16 8 H -0.27 -13.26 6.71 99.48 0.67 -12.59 16 9 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 10 H -0.25 -11.46 7.10 99.48 0.71 -10.76 16 11 C 0.11 4.46 4.19 86.38 0.36 4.82 16 12 C 0.09 3.70 3.48 30.60 0.11 3.81 16 13 H 0.03 1.80 8.14 -2.38 -0.02 1.78 16 14 O -0.55 -18.82 10.92 -148.98 -1.63 -20.44 16 15 C 0.09 2.61 5.07 86.38 0.44 3.05 16 16 N -0.60 -16.61 2.84 -846.75 -2.40 -19.02 16 17 C 0.07 1.33 9.58 127.77 1.22 2.56 16 18 C 0.51 16.18 6.74 87.66 0.59 16.77 16 19 O -0.57 -23.13 15.52 -3.01 -0.05 -23.17 16 20 C -0.14 -3.23 2.45 -11.55 -0.03 -3.26 16 21 H 0.16 2.39 6.54 -2.39 -0.02 2.38 16 22 C -0.11 -1.60 6.40 31.65 0.20 -1.40 16 23 C 0.09 1.66 7.61 86.83 0.66 2.32 16 24 N -0.72 -16.89 6.24 -459.82 -2.87 -19.76 16 25 C 0.52 15.27 7.71 87.90 0.68 15.94 16 26 O -0.57 -21.36 17.43 -3.02 -0.05 -21.41 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.03 1.13 8.01 -2.38 -0.02 1.11 16 29 H 0.07 2.26 6.82 -2.39 -0.02 2.24 16 30 H 0.26 16.66 8.31 -92.70 -0.77 15.89 16 31 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 32 H 0.03 1.63 2.92 -2.39 -0.01 1.62 16 33 H 0.38 8.35 8.80 -74.06 -0.65 7.70 16 34 H 0.13 2.50 8.07 -2.39 -0.02 2.48 16 35 H 0.07 2.43 7.37 -2.39 -0.02 2.41 16 36 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.49 7.22 -2.39 -0.02 1.47 16 38 H 0.07 1.40 6.00 -2.39 -0.01 1.38 16 39 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 1.61 7.54 -2.39 -0.02 1.59 16 41 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.42 8.76 8.96 -92.71 -0.83 7.93 16 Total: -1.00 -93.86 345.63 -0.38 -94.24 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -0.48 Total: 21.61 kcal Atomic # 6 Polarization: 27.32 SS G_CDS: 6.86 Total: 34.18 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -6.74 Total: -135.23 kcal Atomic # 8 Polarization: -63.30 SS G_CDS: -1.73 Total: -65.03 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 1.70 Total: 50.22 kcal Total: -93.86 -0.38 -94.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677165478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.989 kcal (2) G-P(sol) polarization free energy of solvation -93.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds