Wall clock time and date at job start Fri Apr 10 2020 17:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00008 * 2 1 4 4 O 1.20825 * 120.00178 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00149 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.38322 * 300.13608 * 5 3 2 7 7 C 1.47539 * 109.42955 * 180.26524 * 5 3 2 8 8 N 1.46258 * 114.37895 * 177.70233 * 7 5 3 9 9 C 1.46904 * 111.00435 * 211.44734 * 8 7 5 10 10 C 1.44768 * 110.64553 * 87.74426 * 8 7 5 11 11 C 1.53652 * 109.52954 * 265.74683 * 10 8 7 12 12 N 1.47778 * 111.77101 * 40.28138 * 11 10 8 13 13 C 1.34778 * 118.55028 * 221.76638 * 12 11 10 14 14 O 1.21590 * 119.99723 * 4.53914 * 13 12 11 15 15 N 1.34777 * 119.99832 * 184.53880 * 13 12 11 16 16 C 1.46500 * 119.99498 * 174.85659 * 15 13 12 17 17 C 1.50698 * 109.46950 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00319 * 180.27693 * 17 16 15 20 20 N 1.31513 * 119.99785 * 359.72853 * 19 17 16 21 21 Si 1.86799 * 120.00242 * 179.72513 * 19 17 16 22 22 H 1.48505 * 109.46808 * 90.00175 * 21 19 17 23 23 H 1.48495 * 109.47086 * 210.00128 * 21 19 17 24 24 H 1.48503 * 109.47073 * 330.00447 * 21 19 17 25 25 C 1.44675 * 122.90073 * 41.48670 * 12 11 10 26 26 H 1.09001 * 109.47277 * 59.99908 * 1 2 3 27 27 H 1.08996 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47056 * 300.00513 * 1 2 3 29 29 H 1.09001 * 108.50526 * 298.97619 * 7 5 3 30 30 H 1.09004 * 108.50059 * 56.59622 * 7 5 3 31 31 H 1.09002 * 109.47013 * 59.99375 * 9 8 7 32 32 H 1.08998 * 109.47153 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46386 * 299.99961 * 9 8 7 34 34 H 1.08996 * 109.43307 * 25.90472 * 10 8 7 35 35 H 1.08994 * 109.43488 * 145.82167 * 10 8 7 36 36 H 1.09007 * 109.05370 * 279.61792 * 11 10 8 37 37 H 1.09002 * 108.85805 * 160.81628 * 11 10 8 38 38 H 0.96994 * 119.99855 * 354.86085 * 15 13 12 39 39 H 1.09004 * 109.46748 * 60.00511 * 16 15 13 40 40 H 1.08997 * 109.47811 * 300.00242 * 16 15 13 41 41 H 0.96999 * 119.99920 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46474 * 31.21121 * 25 12 11 43 43 H 1.09004 * 109.46358 * 151.19296 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9542 0.7785 0.8901 7 6 3.9836 2.6901 0.0069 8 7 5.4310 2.8924 0.0614 9 6 5.7631 4.1289 0.7817 10 6 5.9958 2.9009 -1.2715 11 6 6.4910 1.4908 -1.6285 12 7 5.5571 0.4465 -1.1582 13 6 6.0667 -0.6696 -0.6005 14 8 7.2650 -0.7653 -0.4180 15 7 5.2481 -1.6796 -0.2452 16 6 5.8102 -2.9362 0.2560 17 6 4.6917 -3.8927 0.5804 18 1 3.6649 -3.5945 0.4280 19 6 4.9790 -5.1466 1.0766 20 7 6.2293 -5.5099 1.2618 21 14 3.5923 -6.3294 1.4859 22 1 3.2712 -7.1485 0.2896 23 1 4.0131 -7.2199 2.5972 24 1 2.3903 -5.5599 1.8962 25 6 4.1197 0.5720 -1.2645 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.6012 3.1675 -0.8953 30 1 3.5354 3.1789 0.8720 31 1 5.3797 4.0701 1.8004 32 1 6.8454 4.2547 0.8079 33 1 5.3103 4.9792 0.2717 34 1 5.2341 3.2126 -1.9861 35 1 6.8329 3.5981 -1.3063 36 1 7.4663 1.3292 -1.1693 37 1 6.5920 1.4165 -2.7113 38 1 4.2869 -1.5744 -0.3213 39 1 6.3926 -2.7401 1.1563 40 1 6.4548 -3.3752 -0.5053 41 1 6.4314 -6.3921 1.6105 42 1 3.8709 1.1625 -2.1463 43 1 3.6742 -0.4189 -1.3534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680659922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:55 Heat of formation + Delta-G solvation = -88.707518 kcal Electronic energy + Delta-G solvation = -25854.900013 eV Core-core repulsion = 22129.278054 eV Total energy + Delta-G solvation = -3725.621959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03310 -39.74900 -38.15364 -36.58891 -35.00577 -34.27051 -33.06271 -32.17053 -29.43949 -28.02289 -26.95004 -26.33521 -25.24651 -23.41090 -22.28319 -21.13572 -20.28725 -19.06845 -18.01596 -17.84971 -16.97682 -16.80624 -16.05908 -15.86847 -15.40562 -15.11380 -14.80600 -14.45314 -14.41247 -13.92811 -13.66446 -13.36528 -13.12479 -13.05586 -12.84388 -12.72727 -12.17217 -12.01078 -11.88700 -11.83395 -11.60848 -11.39712 -11.06191 -11.01456 -10.90015 -10.88477 -10.81661 -10.56202 -10.22060 -9.29625 -9.24837 -8.66123 -8.49621 -8.33881 -7.65785 -6.09034 -4.14683 2.02169 2.47154 3.25292 3.28551 3.35005 3.37929 3.81833 3.94474 4.36614 4.52766 4.56868 4.70836 4.82891 4.91798 5.00430 5.02095 5.07771 5.09686 5.19858 5.27175 5.29719 5.37567 5.43887 5.45767 5.53506 5.68417 5.73089 5.77409 5.85309 6.12566 6.25686 6.80399 6.88514 6.99267 7.18267 7.59352 7.59956 7.60830 7.65649 7.92807 8.09447 8.83753 8.98631 9.39870 9.55087 11.01327 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.005115 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.793248 B = 5473.169605 C = 7117.828473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.475 3.525 4 O -0.513 6.513 5 C -0.104 4.104 6 H 0.124 0.876 7 C 0.075 3.925 8 N -0.533 5.533 9 C 0.032 3.968 10 C 0.041 3.959 11 C 0.138 3.862 12 N -0.619 5.619 13 C 0.695 3.305 14 O -0.595 6.595 15 N -0.730 5.730 16 C 0.266 3.734 17 C -0.538 4.538 18 H 0.063 0.937 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.131 3.869 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.387 0.613 39 H 0.025 0.975 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.077 0.923 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 17.676 -5.139 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.263 6.263 3 C 0.317 3.683 4 O -0.401 6.401 5 C -0.125 4.125 6 H 0.142 0.858 7 C -0.053 4.053 8 N -0.256 5.256 9 C -0.116 4.116 10 C -0.088 4.088 11 C 0.014 3.986 12 N -0.357 5.357 13 C 0.396 3.604 14 O -0.474 6.474 15 N -0.384 5.384 16 C 0.145 3.855 17 C -0.576 4.576 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.524 5.524 21 Si 0.729 3.271 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C 0.005 3.995 26 H 0.080 0.920 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.222 0.778 39 H 0.043 0.957 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.244 17.304 -4.692 19.337 hybrid contribution -1.854 0.100 -0.076 1.858 sum -9.097 17.404 -4.768 20.209 Atomic orbital electron populations 1.23305 0.76101 1.04104 1.02283 1.86576 1.23545 1.32731 1.83474 1.23469 0.91460 0.81482 0.71883 1.90648 1.67234 1.36427 1.45786 1.20946 0.86972 1.00106 1.04501 0.85820 1.20660 0.87954 0.94174 1.02545 1.60600 1.10861 1.36740 1.17401 1.22448 1.01639 0.89012 0.98490 1.22446 0.99666 0.97718 0.88987 1.21622 0.94308 0.84937 0.97757 1.46713 1.04417 1.18889 1.65639 1.16121 0.85737 0.80037 0.78468 1.90848 1.13960 1.81122 1.61449 1.45913 1.08718 1.15616 1.68112 1.18969 0.94351 0.77655 0.94519 1.21233 0.92820 0.98884 1.44696 0.91923 1.24926 0.95781 0.97986 0.95285 1.69981 1.17518 1.20457 1.44437 0.86447 0.81886 0.80691 0.78050 1.20556 1.21120 1.19764 1.21268 0.82328 1.01345 0.94553 0.91952 0.87701 0.91943 0.93612 0.90702 0.91285 0.90933 0.95665 0.93770 0.90032 0.88551 0.92361 0.77836 0.95671 0.95905 0.92567 0.90459 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.35 -4.39 10.32 -39.26 -0.41 -4.79 16 3 C 0.48 6.11 7.24 36.01 0.26 6.37 16 4 O -0.51 -7.30 15.59 -18.75 -0.29 -7.59 16 5 C -0.10 -1.31 2.78 -93.38 -0.26 -1.57 16 6 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 7 C 0.07 0.86 3.60 -6.81 -0.02 0.84 16 8 N -0.53 -6.21 4.41 -248.17 -1.09 -7.30 16 9 C 0.03 0.30 9.17 60.07 0.55 0.85 16 10 C 0.04 0.42 5.52 -4.63 -0.03 0.40 16 11 C 0.14 1.81 6.45 -3.00 -0.02 1.79 16 12 N -0.62 -9.68 2.54 -178.17 -0.45 -10.13 16 13 C 0.70 14.61 8.21 -86.92 -0.71 13.90 16 14 O -0.60 -14.96 15.62 5.29 0.08 -14.88 16 15 N -0.73 -15.91 5.38 -66.41 -0.36 -16.27 16 16 C 0.27 7.18 5.43 -5.19 -0.03 7.15 16 17 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.13 1.68 4.59 -3.99 -0.02 1.66 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.05 0.51 7.10 -51.93 -0.37 0.14 16 30 H 0.07 0.87 7.37 -51.93 -0.38 0.49 16 31 H 0.07 0.64 8.03 -51.93 -0.42 0.22 16 32 H 0.07 0.62 7.97 -51.93 -0.41 0.21 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.04 0.41 7.14 -51.93 -0.37 0.04 16 35 H 0.08 0.69 7.53 -51.93 -0.39 0.30 16 36 H 0.10 1.50 6.93 -51.93 -0.36 1.14 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 7.44 5.87 -40.82 -0.24 7.20 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 43 H 0.09 1.21 5.80 -51.93 -0.30 0.91 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -34.14 349.14 -7.75 -41.89 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.58 Total: 3.99 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 0.37 Total: 19.48 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -1.17 Total: -59.22 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.61 Total: -27.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.14 -7.75 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680659922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.820 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds