Wall clock time and date at job start Fri Apr 10 2020 17:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00008 * 2 1 4 4 O 1.20825 * 120.00178 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00149 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.38322 * 300.13608 * 5 3 2 7 7 C 1.47539 * 109.42955 * 180.26524 * 5 3 2 8 8 N 1.46258 * 114.37895 * 177.70233 * 7 5 3 9 9 C 1.46904 * 111.00435 * 211.44734 * 8 7 5 10 10 C 1.44768 * 110.64553 * 87.74426 * 8 7 5 11 11 C 1.53652 * 109.52954 * 265.74683 * 10 8 7 12 12 N 1.47778 * 111.77101 * 40.28138 * 11 10 8 13 13 C 1.34778 * 118.55028 * 221.76638 * 12 11 10 14 14 O 1.21590 * 119.99723 * 4.53914 * 13 12 11 15 15 N 1.34777 * 119.99832 * 184.53880 * 13 12 11 16 16 C 1.46500 * 119.99498 * 174.85659 * 15 13 12 17 17 C 1.50698 * 109.46950 * 179.97438 * 16 15 13 18 18 H 1.08007 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00319 * 180.27693 * 17 16 15 20 20 N 1.31513 * 119.99785 * 359.72853 * 19 17 16 21 21 Si 1.86799 * 120.00242 * 179.72513 * 19 17 16 22 22 H 1.48505 * 109.46808 * 90.00175 * 21 19 17 23 23 H 1.48495 * 109.47086 * 210.00128 * 21 19 17 24 24 H 1.48503 * 109.47073 * 330.00447 * 21 19 17 25 25 C 1.44675 * 122.90073 * 41.48670 * 12 11 10 26 26 H 1.09001 * 109.47277 * 59.99908 * 1 2 3 27 27 H 1.08996 * 109.47298 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47056 * 300.00513 * 1 2 3 29 29 H 1.09001 * 108.50526 * 298.97619 * 7 5 3 30 30 H 1.09004 * 108.50059 * 56.59622 * 7 5 3 31 31 H 1.09002 * 109.47013 * 59.99375 * 9 8 7 32 32 H 1.08998 * 109.47153 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.46386 * 299.99961 * 9 8 7 34 34 H 1.08996 * 109.43307 * 25.90472 * 10 8 7 35 35 H 1.08994 * 109.43488 * 145.82167 * 10 8 7 36 36 H 1.09007 * 109.05370 * 279.61792 * 11 10 8 37 37 H 1.09002 * 108.85805 * 160.81628 * 11 10 8 38 38 H 0.96994 * 119.99855 * 354.86085 * 15 13 12 39 39 H 1.09004 * 109.46748 * 60.00511 * 16 15 13 40 40 H 1.08997 * 109.47811 * 300.00242 * 16 15 13 41 41 H 0.96999 * 119.99920 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.46474 * 31.21121 * 25 12 11 43 43 H 1.09004 * 109.46358 * 151.19296 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9542 0.7785 0.8901 7 6 3.9836 2.6901 0.0069 8 7 5.4310 2.8924 0.0614 9 6 5.7631 4.1289 0.7817 10 6 5.9958 2.9009 -1.2715 11 6 6.4910 1.4908 -1.6285 12 7 5.5571 0.4465 -1.1582 13 6 6.0667 -0.6696 -0.6005 14 8 7.2650 -0.7653 -0.4180 15 7 5.2481 -1.6796 -0.2452 16 6 5.8102 -2.9362 0.2560 17 6 4.6917 -3.8927 0.5804 18 1 3.6649 -3.5945 0.4280 19 6 4.9790 -5.1466 1.0766 20 7 6.2293 -5.5099 1.2618 21 14 3.5923 -6.3294 1.4859 22 1 3.2712 -7.1485 0.2896 23 1 4.0131 -7.2199 2.5972 24 1 2.3903 -5.5599 1.8962 25 6 4.1197 0.5720 -1.2645 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.6012 3.1675 -0.8953 30 1 3.5354 3.1789 0.8720 31 1 5.3797 4.0701 1.8004 32 1 6.8454 4.2547 0.8079 33 1 5.3103 4.9792 0.2717 34 1 5.2341 3.2126 -1.9861 35 1 6.8329 3.5981 -1.3063 36 1 7.4663 1.3292 -1.1693 37 1 6.5920 1.4165 -2.7113 38 1 4.2869 -1.5744 -0.3213 39 1 6.3926 -2.7401 1.1563 40 1 6.4548 -3.3752 -0.5053 41 1 6.4314 -6.3921 1.6105 42 1 3.8709 1.1625 -2.1463 43 1 3.6742 -0.4189 -1.3534 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680659922.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:55 Heat of formation + Delta-G solvation = -113.760285 kcal Electronic energy + Delta-G solvation = -25855.986382 eV Core-core repulsion = 22129.278054 eV Total energy + Delta-G solvation = -3726.708329 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.10525 -41.08104 -39.35258 -37.57671 -36.30850 -36.15389 -34.38174 -34.00827 -30.62421 -28.90625 -28.73591 -27.38864 -26.18374 -25.00745 -23.76090 -22.30573 -21.24900 -20.69554 -19.49724 -18.85798 -18.08720 -18.02826 -17.72282 -17.13707 -16.65858 -16.37025 -16.26977 -15.99736 -15.45903 -15.01060 -14.82897 -14.60922 -14.51938 -14.27086 -14.05358 -13.93054 -13.60773 -13.56172 -12.98983 -12.90640 -12.78328 -12.68035 -12.61623 -12.49163 -12.15303 -12.00232 -11.93404 -11.77680 -11.58582 -11.41112 -11.03576 -10.74684 -9.96768 -9.40827 -9.26749 -8.22886 -6.38510 1.00242 1.46004 1.49232 1.51741 1.60355 1.92434 2.28500 2.43089 2.95936 3.12114 3.24339 3.51491 3.59422 3.88413 3.99029 4.08067 4.22040 4.24859 4.30615 4.36897 4.38507 4.55031 4.59378 4.71735 4.74806 4.78763 4.79925 4.84602 4.98374 5.04028 5.16503 5.31766 5.34045 5.54483 5.64163 5.75638 5.91121 6.05213 6.13757 6.18259 6.61916 6.72935 7.24282 7.31371 7.76434 8.89522 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.005115 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.793248 B = 5473.169605 C = 7117.828473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.482 3.518 4 O -0.525 6.525 5 C -0.097 4.097 6 H 0.100 0.900 7 C 0.079 3.921 8 N -0.560 5.560 9 C 0.034 3.966 10 C 0.049 3.951 11 C 0.131 3.869 12 N -0.605 5.605 13 C 0.692 3.308 14 O -0.643 6.643 15 N -0.724 5.724 16 C 0.286 3.714 17 C -0.550 4.550 18 H 0.082 0.918 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.983 3.017 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.255 1.255 25 C 0.128 3.872 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.401 0.599 39 H -0.017 1.017 40 H -0.014 1.014 41 H 0.268 0.732 42 H 0.112 0.888 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 18.815 -6.044 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.325 3.675 4 O -0.415 6.415 5 C -0.118 4.118 6 H 0.118 0.882 7 C -0.049 4.049 8 N -0.284 5.284 9 C -0.113 4.113 10 C -0.080 4.080 11 C 0.008 3.992 12 N -0.340 5.340 13 C 0.393 3.607 14 O -0.526 6.526 15 N -0.379 5.379 16 C 0.163 3.837 17 C -0.587 4.587 18 H 0.100 0.900 19 C -0.194 4.194 20 N -0.570 5.570 21 Si 0.806 3.194 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.179 1.179 25 C 0.003 3.997 26 H 0.090 0.910 27 H 0.142 0.858 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.239 0.761 39 H 0.001 0.999 40 H 0.004 0.996 41 H 0.076 0.924 42 H 0.130 0.870 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.903 18.514 -5.628 21.738 hybrid contribution -1.021 -0.194 0.190 1.057 sum -10.924 18.321 -5.438 22.013 Atomic orbital electron populations 1.23587 0.74357 1.05668 1.02895 1.86559 1.25367 1.32534 1.83201 1.23338 0.91276 0.81416 0.71468 1.90642 1.67476 1.36824 1.46519 1.20843 0.87075 1.00747 1.03166 0.88152 1.20603 0.88094 0.93173 1.03008 1.60541 1.10950 1.38409 1.18453 1.22452 1.02091 0.88600 0.98203 1.22413 1.01000 0.95710 0.88851 1.21898 0.92580 0.85927 0.98787 1.46689 1.06122 1.17493 1.63740 1.16310 0.84931 0.81086 0.78348 1.90812 1.16120 1.82312 1.63312 1.45515 1.09464 1.14542 1.68429 1.18391 0.93939 0.79736 0.91648 1.21567 0.93419 0.99119 1.44644 0.90003 1.26024 0.98605 1.00075 0.94716 1.70148 1.20316 1.21198 1.45342 0.85187 0.78476 0.77863 0.77870 1.19512 1.21140 1.17863 1.21482 0.80151 1.01920 0.96120 0.90953 0.85755 0.91774 0.92357 0.90992 0.91733 0.90441 0.93922 0.91521 0.87910 0.91541 0.90012 0.76134 0.99887 0.99630 0.92355 0.87025 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.66 16 2 O -0.36 -8.47 10.32 -51.43 -0.53 -9.00 16 3 C 0.48 11.57 7.24 71.24 0.52 12.09 16 4 O -0.53 -13.88 15.59 21.97 0.34 -13.54 16 5 C -0.10 -2.31 2.78 -12.58 -0.04 -2.34 16 6 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 7 C 0.08 1.67 3.60 84.72 0.30 1.97 16 8 N -0.56 -12.01 4.41 -939.08 -4.14 -16.14 16 9 C 0.03 0.56 9.17 127.69 1.17 1.73 16 10 C 0.05 0.88 5.52 86.92 0.48 1.36 16 11 C 0.13 3.28 6.45 86.35 0.56 3.84 16 12 N -0.60 -18.54 2.54 -835.87 -2.12 -20.66 16 13 C 0.69 29.95 8.21 179.05 1.47 31.42 16 14 O -0.64 -34.01 15.62 -4.00 -0.06 -34.07 16 15 N -0.72 -32.50 5.38 -482.29 -2.60 -35.10 16 16 C 0.29 16.19 5.43 85.63 0.47 16.66 16 17 C -0.55 -30.29 9.28 25.60 0.24 -30.06 16 18 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 19 C 0.01 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 21 Si 0.98 42.45 29.54 68.60 2.03 44.47 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.25 -10.20 7.11 99.48 0.71 -9.50 16 25 C 0.13 3.04 4.59 87.39 0.40 3.44 16 26 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 27 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.06 1.09 7.10 -2.39 -0.02 1.08 16 30 H 0.07 1.56 7.37 -2.38 -0.02 1.54 16 31 H 0.06 1.11 8.03 -2.39 -0.02 1.09 16 32 H 0.08 1.19 7.97 -2.39 -0.02 1.17 16 33 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.93 7.14 -2.39 -0.02 0.92 16 35 H 0.10 1.43 7.53 -2.39 -0.02 1.41 16 36 H 0.07 2.10 6.93 -2.38 -0.02 2.08 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.40 15.47 5.87 -92.71 -0.54 14.93 16 39 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 43 H 0.09 2.17 5.80 -2.39 -0.01 2.15 16 Total: -1.00 -76.86 349.14 0.90 -75.96 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.47 Total: 21.97 kcal Atomic # 6 Polarization: 35.29 SS G_CDS: 7.23 Total: 42.51 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -8.57 Total: -128.31 kcal Atomic # 8 Polarization: -56.36 SS G_CDS: -0.25 Total: -56.61 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -76.86 0.90 -75.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680659922.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.802 kcal (2) G-P(sol) polarization free energy of solvation -76.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds