Wall clock time and date at job start Fri Apr 10 2020 17:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99715 * 2 1 4 4 C 1.50698 * 109.46961 * 180.02562 * 3 2 1 5 5 O 1.21286 * 120.00012 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.46509 * 119.99949 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47042 * 180.02562 * 7 6 4 9 9 H 1.09001 * 110.64841 * 54.30121 * 8 7 6 10 10 C 1.54597 * 110.72489 * 291.14464 * 8 7 6 11 11 C 1.53994 * 105.14051 * 219.51072 * 10 8 7 12 12 N 1.47894 * 107.05689 * 358.77410 * 11 10 8 13 13 C 1.46905 * 110.99867 * 145.84575 * 12 11 10 14 14 C 1.50704 * 109.47222 * 183.35936 * 13 12 11 15 15 O 1.21297 * 119.99806 * 353.86675 * 14 13 12 16 16 N 1.34779 * 119.99963 * 173.86275 * 14 13 12 17 17 C 1.37088 * 119.99717 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00451 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99868 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00214 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99966 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47409 * 89.99754 * 21 19 17 23 23 H 1.48494 * 109.47308 * 210.00162 * 21 19 17 24 24 H 1.48506 * 109.47055 * 329.99935 * 21 19 17 25 25 C 1.48529 * 105.82303 * 25.33414 * 12 11 10 26 26 H 1.08997 * 109.47064 * 299.99244 * 1 2 3 27 27 H 1.09005 * 109.47317 * 59.99767 * 1 2 3 28 28 H 1.09005 * 109.47206 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47096 * 60.00557 * 3 2 1 30 30 H 1.08997 * 109.47652 * 300.00227 * 3 2 1 31 31 H 0.96997 * 120.00421 * 0.02562 * 6 4 3 32 32 H 1.09001 * 109.46791 * 59.99870 * 7 6 4 33 33 H 1.08997 * 109.46911 * 300.00180 * 7 6 4 34 34 H 1.09002 * 110.30961 * 338.42803 * 10 8 7 35 35 H 1.09001 * 110.30369 * 100.49149 * 10 8 7 36 36 H 1.08997 * 109.91563 * 118.13070 * 11 10 8 37 37 H 1.09002 * 109.91521 * 239.22796 * 11 10 8 38 38 H 1.08991 * 109.47220 * 303.36217 * 13 12 11 39 39 H 1.08995 * 109.46863 * 63.36166 * 13 12 11 40 40 H 0.97000 * 119.99387 * 0.02562 * 16 14 13 41 41 H 0.96993 * 120.00220 * 179.97438 * 20 19 17 42 42 H 1.09010 * 110.66843 * 202.35952 * 25 12 11 43 43 H 1.08996 * 110.67069 * 79.22951 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2763 2.2969 -0.0002 7 6 5.7368 2.1813 -0.0014 8 6 6.3590 3.5790 0.0000 9 1 5.9722 4.1711 0.8294 10 6 6.1041 4.2928 -1.3474 11 6 7.4135 5.0401 -1.6609 12 7 8.3389 4.7844 -0.5358 13 6 9.7288 4.7062 -1.0048 14 6 10.6311 4.3638 0.1527 15 8 10.1806 4.3104 1.2776 16 7 11.9385 4.1169 -0.0621 17 6 12.7591 3.8049 0.9909 18 1 12.3579 3.7566 1.9924 19 6 14.1072 3.5508 0.7696 20 7 14.8937 3.2513 1.7788 21 14 14.8014 3.6351 -0.9626 22 1 15.2710 5.0161 -1.2411 23 1 15.9406 2.6906 -1.0858 24 1 13.7443 3.2656 -1.9380 25 6 7.9050 3.4951 0.0604 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8465 -0.8899 31 1 3.8592 3.1726 0.0009 32 1 6.0578 1.6412 -0.8921 33 1 6.0591 1.6396 0.8878 34 1 5.8892 3.5625 -2.1276 35 1 5.2780 4.9975 -1.2518 36 1 7.8436 4.6626 -2.5886 37 1 7.2189 6.1089 -1.7499 38 1 9.8112 3.9346 -1.7702 39 1 10.0253 5.6674 -1.4246 40 1 12.2988 4.1599 -0.9617 41 1 15.8347 3.0736 1.6242 42 1 8.2458 3.4146 1.0928 43 1 8.2682 2.6556 -0.5322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691112125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:31 Heat of formation + Delta-G solvation = -101.865199 kcal Electronic energy + Delta-G solvation = -23887.400668 eV Core-core repulsion = 20161.208148 eV Total energy + Delta-G solvation = -3726.192519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14837 -39.32340 -37.99191 -37.56928 -35.14846 -33.96144 -32.26653 -31.62608 -29.94710 -28.92486 -27.24103 -26.33563 -24.79394 -23.76940 -21.38182 -20.60196 -20.35801 -19.36964 -18.29561 -17.62613 -17.13707 -16.72871 -16.42515 -15.68817 -15.45025 -15.32024 -15.01742 -14.79495 -14.69587 -14.30216 -13.77443 -13.46669 -13.33102 -13.09546 -12.85265 -12.65471 -12.47069 -12.28794 -11.95461 -11.87818 -11.80162 -11.35940 -11.13444 -11.12477 -10.86896 -10.65904 -10.59687 -10.23860 -10.01264 -9.97740 -9.54962 -9.30497 -8.55800 -8.19944 -8.08377 -6.31237 -3.82607 2.36655 2.51734 3.02335 3.06684 3.15065 3.69045 3.72724 3.98024 4.10199 4.37026 4.46395 4.61434 4.67989 4.68283 4.72160 4.88109 4.91497 4.93139 5.14146 5.20888 5.24350 5.25185 5.38865 5.57785 5.62874 5.65538 5.70755 5.75973 5.79215 5.90713 6.01863 6.09652 6.23648 6.45735 6.54449 7.06954 7.11951 7.22030 7.58008 7.97346 8.14097 8.59628 8.94895 9.42035 9.82382 10.81811 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.027379 B = 0.002421 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.448926 B =11560.808560 C =12046.841482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.510 3.490 5 O -0.518 6.518 6 N -0.726 5.726 7 C 0.130 3.870 8 C -0.106 4.106 9 H 0.091 0.909 10 C -0.126 4.126 11 C 0.033 3.967 12 N -0.493 5.493 13 C 0.034 3.966 14 C 0.451 3.549 15 O -0.560 6.560 16 N -0.590 5.590 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.048 3.952 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.401 0.599 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.642 1.615 -9.882 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.295 3.705 5 O -0.392 6.392 6 N -0.380 5.380 7 C 0.006 3.994 8 C -0.125 4.125 9 H 0.110 0.890 10 C -0.164 4.164 11 C -0.095 4.095 12 N -0.217 5.217 13 C -0.098 4.098 14 C 0.236 3.764 15 O -0.442 6.442 16 N -0.229 5.229 17 C -0.433 4.433 18 H 0.138 0.862 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.080 4.080 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -25.226 0.956 -8.655 26.687 hybrid contribution 0.474 0.159 -2.051 2.111 sum -24.753 1.114 -10.706 26.992 Atomic orbital electron populations 1.22851 0.80308 1.03417 1.00123 1.88033 1.19832 1.25164 1.95416 1.22241 0.91731 0.87079 1.02628 1.20253 0.88649 0.84684 0.76963 1.90764 1.74588 1.26486 1.47396 1.45879 1.07367 1.08581 1.76204 1.21401 0.78088 0.96938 1.02951 1.22370 0.96924 0.94719 0.98489 0.89043 1.22495 0.97734 0.99206 0.96955 1.22906 0.92618 1.00863 0.93137 1.64521 1.00613 1.31461 1.25094 1.22121 0.89562 1.01769 0.96305 1.19611 0.82678 0.84110 0.89960 1.90529 1.74386 1.55392 1.23916 1.42210 1.08067 1.63482 1.09181 1.19424 0.89583 1.44088 0.90206 0.86233 1.25044 0.95909 0.97504 0.97728 1.69618 1.05817 1.46321 1.30299 0.86673 0.79661 0.78934 0.84119 1.19598 1.20176 1.19566 1.23298 0.91419 0.90018 1.03292 0.93735 0.93801 0.89028 0.90150 0.90253 0.76546 0.91241 0.90724 0.91404 0.91108 0.93948 0.90372 0.93350 0.88965 0.79722 0.91603 0.87082 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.79 10.24 -55.14 -0.56 -4.35 16 3 C 0.04 0.32 6.42 36.00 0.23 0.56 16 4 C 0.51 5.66 7.91 -10.99 -0.09 5.57 16 5 O -0.52 -8.53 16.50 -14.36 -0.24 -8.77 16 6 N -0.73 -6.29 5.43 -60.29 -0.33 -6.62 16 7 C 0.13 1.40 5.02 -4.04 -0.02 1.38 16 8 C -0.11 -1.14 3.09 -88.76 -0.27 -1.41 16 9 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 10 C -0.13 -1.14 6.31 -25.37 -0.16 -1.30 16 11 C 0.03 0.37 6.70 -2.76 -0.02 0.35 16 12 N -0.49 -7.62 5.11 -231.90 -1.18 -8.80 16 13 C 0.03 0.57 5.31 -4.97 -0.03 0.54 16 14 C 0.45 10.14 7.42 -10.98 -0.08 10.06 16 15 O -0.56 -14.68 13.87 5.54 0.08 -14.60 16 16 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 17 C -0.30 -8.58 10.16 -14.94 -0.15 -8.74 16 18 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 21 Si 0.88 19.40 27.74 -169.99 -4.71 14.69 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 25 C 0.05 0.72 5.04 -1.90 -0.01 0.71 16 26 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.40 2.14 8.40 -40.82 -0.34 1.80 16 32 H 0.07 0.82 8.02 -51.93 -0.42 0.40 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.72 7.98 -51.93 -0.41 0.30 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.37 7.74 5.76 -40.82 -0.24 7.50 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.11 2.07 6.43 -51.92 -0.33 1.74 16 43 H 0.04 0.64 7.92 -51.93 -0.41 0.23 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -36.49 355.62 -7.20 -43.69 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.74 Total: 8.41 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 0.42 Total: 10.05 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.79 Total: -54.47 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.72 Total: -27.72 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.49 -7.20 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691112125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.178 kcal (2) G-P(sol) polarization free energy of solvation -36.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds