Wall clock time and date at job start Fri Apr 10 2020 17:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 114.00015 * 2 1 4 4 C 1.50706 * 109.46839 * 179.97438 * 3 2 1 5 5 O 1.21278 * 120.00030 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99979 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00119 * 0.02562 * 6 4 3 8 8 C 1.46499 * 120.00030 * 180.02562 * 6 4 3 9 9 C 1.50696 * 109.47293 * 270.00193 * 8 6 4 10 10 O 1.21284 * 120.00096 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99838 * 179.97438 * 9 8 6 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 180.02562 * 12 11 9 14 14 H 1.08994 * 112.96670 * 55.32782 * 13 12 11 15 15 C 1.53946 * 113.76817 * 187.01278 * 13 12 11 16 16 C 1.53948 * 86.28936 * 137.90622 * 15 13 12 17 17 N 1.47579 * 113.76600 * 283.65227 * 13 12 11 18 18 C 1.36944 * 134.49414 * 41.07265 * 17 13 12 19 19 H 1.07997 * 119.99719 * 359.97438 * 18 17 13 20 20 C 1.38809 * 119.99592 * 179.97438 * 18 17 13 21 21 N 1.31616 * 120.00787 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99566 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47059 * 60.00140 * 22 20 18 24 24 H 1.48501 * 109.47134 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47333 * 300.00436 * 22 20 18 26 26 H 1.08995 * 109.47205 * 59.99097 * 1 2 3 27 27 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46495 * 299.99900 * 1 2 3 29 29 H 1.08998 * 109.47138 * 60.00596 * 3 2 1 30 30 H 1.08990 * 109.47671 * 299.99903 * 3 2 1 31 31 H 1.08998 * 109.47736 * 269.99882 * 7 6 4 32 32 H 1.09005 * 109.47104 * 29.99751 * 7 6 4 33 33 H 1.09003 * 109.47505 * 149.99276 * 7 6 4 34 34 H 1.09004 * 109.47041 * 150.00234 * 8 6 4 35 35 H 1.09001 * 109.47271 * 30.00636 * 8 6 4 36 36 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 38 38 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 39 39 H 1.09004 * 113.73765 * 252.25219 * 15 13 12 40 40 H 1.08996 * 113.74482 * 23.55944 * 15 13 12 41 41 H 1.09000 * 113.76682 * 90.69588 * 16 15 13 42 42 H 1.09006 * 113.76815 * 221.97439 * 16 15 13 43 43 H 0.96998 * 120.00401 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0342 0.0914 0.0006 6 7 4.2766 2.2966 0.0002 7 6 3.6467 3.6193 -0.0003 8 6 5.7370 2.1809 0.0003 9 6 6.2378 2.1417 1.4211 10 8 5.4521 2.2038 2.3429 11 7 7.5587 2.0366 1.6673 12 6 8.0456 1.9979 3.0485 13 6 9.5708 1.8771 3.0485 14 1 10.0599 2.6664 2.4777 15 6 10.1757 1.6565 4.4469 16 6 11.1003 0.6255 3.7745 17 7 10.0601 0.5218 2.7296 18 6 9.6956 -0.4428 1.8285 19 1 8.8723 -0.2664 1.1521 20 6 10.3844 -1.6471 1.7845 21 7 11.3874 -1.8623 2.6091 22 14 9.8867 -2.9632 0.5557 23 1 10.0139 -2.4266 -0.8231 24 1 10.7719 -4.1454 0.7109 25 1 8.4784 -3.3641 0.8028 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.6888 1.8463 0.8900 30 1 1.6888 1.8464 -0.8899 31 1 3.4904 3.9470 -1.0280 32 1 2.6869 3.5648 0.5136 33 1 4.2938 4.3302 0.5134 34 1 6.1695 3.0392 -0.5139 35 1 6.0289 1.2648 -0.5133 36 1 8.1870 1.9858 0.9301 37 1 7.7539 2.9139 3.5624 38 1 7.6127 1.1395 3.5625 39 1 10.7012 2.5269 4.8399 40 1 9.4790 1.2203 5.1626 41 1 12.0400 1.0459 3.4163 42 1 11.2366 -0.2869 4.3551 43 1 11.8689 -2.7037 2.5780 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699622227.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:08 Heat of formation + Delta-G solvation = -45.744117 kcal Electronic energy + Delta-G solvation = -24773.423697 eV Core-core repulsion = 21049.664771 eV Total energy + Delta-G solvation = -3723.758926 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31516 -39.05528 -37.92507 -37.46317 -35.48362 -33.99257 -32.14727 -30.44519 -28.61150 -27.88755 -27.29382 -26.54753 -25.25369 -23.33038 -22.16845 -20.55703 -19.55329 -19.01949 -17.57546 -17.37422 -16.88164 -16.58061 -16.22722 -16.00656 -15.36364 -15.13882 -14.81562 -14.65281 -14.31281 -13.92286 -13.61288 -13.32096 -13.14527 -13.06084 -12.92849 -12.64879 -12.40167 -12.14602 -11.70759 -11.62029 -11.37422 -11.08045 -10.96193 -10.66851 -10.52613 -10.06669 -10.03236 -9.86413 -9.77763 -9.72584 -9.41570 -8.75307 -8.71644 -8.56110 -6.85946 -5.72056 -3.04676 2.40048 2.60164 2.92978 3.45199 3.50008 3.53134 3.57313 3.76750 4.39267 4.48906 4.72352 4.81421 4.92515 4.97689 5.01807 5.04698 5.09392 5.16429 5.24642 5.39569 5.41350 5.43899 5.45311 5.63154 5.73681 5.93579 6.08246 6.14457 6.33830 6.41301 6.63625 6.71983 6.74057 6.90239 7.16676 7.27200 7.43084 7.62078 7.87988 8.02326 8.10249 8.55669 9.08402 9.75865 10.62838 11.44640 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003928 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.080950 B = 7126.922306 C = 8418.475446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.049 3.951 4 C 0.517 3.483 5 O -0.507 6.507 6 N -0.601 5.601 7 C 0.081 3.919 8 C 0.097 3.903 9 C 0.494 3.506 10 O -0.545 6.545 11 N -0.712 5.712 12 C 0.125 3.875 13 C 0.126 3.874 14 H 0.049 0.951 15 C -0.156 4.156 16 C 0.159 3.841 17 N -0.602 5.602 18 C -0.220 4.220 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.906 3.094 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.283 1.283 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.403 0.597 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.073 0.927 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.363 14.605 -5.745 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.031 4.031 4 C 0.303 3.697 5 O -0.380 6.380 6 N -0.336 5.336 7 C -0.062 4.062 8 C -0.030 4.030 9 C 0.278 3.722 10 O -0.422 6.422 11 N -0.362 5.362 12 C 0.000 4.000 13 C 0.019 3.981 14 H 0.066 0.934 15 C -0.195 4.195 16 C 0.034 3.966 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.736 3.264 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.209 1.209 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.126 0.874 35 H 0.134 0.866 36 H 0.237 0.763 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.515 13.527 -5.232 21.980 hybrid contribution -0.028 -0.412 -1.051 1.129 sum -16.543 13.115 -6.283 22.027 Atomic orbital electron populations 1.22834 0.80429 1.03366 0.99986 1.88048 1.19725 1.25224 1.95372 1.22233 0.91548 0.86941 1.02360 1.20229 0.88757 0.84163 0.76515 1.90788 1.74279 1.26072 1.46836 1.47261 1.05302 1.06492 1.74544 1.21827 0.99021 0.83784 1.01540 1.21330 0.80629 1.05806 0.95201 1.21002 0.82783 0.76700 0.91687 1.90657 1.55323 1.50173 1.46090 1.45929 1.06861 1.73422 1.10024 1.21741 0.95310 1.00991 0.81929 1.22493 0.91131 0.89971 0.94547 0.93358 1.23769 1.00264 0.99613 0.95861 1.22230 0.90461 0.95742 0.88187 1.46089 1.35130 1.10239 1.41422 1.18900 1.12044 0.92727 1.11112 0.90355 1.24738 0.97994 0.97875 0.99591 1.69806 1.22939 1.24804 1.39231 0.86292 0.77910 0.81447 0.80750 1.21192 1.21583 1.20904 0.93899 0.89056 0.93793 0.90069 0.90319 0.92211 0.91036 0.90604 0.87404 0.86620 0.76258 0.92351 0.91142 0.92816 0.90543 0.95553 0.90882 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.92 10.24 -55.14 -0.56 -5.49 16 3 C 0.05 0.54 4.97 36.01 0.18 0.71 16 4 C 0.52 7.84 7.75 -10.98 -0.09 7.75 16 5 O -0.51 -10.46 16.08 -14.35 -0.23 -10.69 16 6 N -0.60 -7.44 2.36 -182.95 -0.43 -7.87 16 7 C 0.08 0.61 10.24 59.85 0.61 1.22 16 8 C 0.10 1.25 5.89 -5.20 -0.03 1.22 16 9 C 0.49 8.37 7.90 -10.99 -0.09 8.28 16 10 O -0.54 -11.08 16.43 5.55 0.09 -10.98 16 11 N -0.71 -12.06 5.35 -60.29 -0.32 -12.38 16 12 C 0.13 2.30 5.54 -4.04 -0.02 2.28 16 13 C 0.13 2.44 4.33 -66.87 -0.29 2.15 16 14 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.16 -2.89 7.86 -25.79 -0.20 -3.09 16 16 C 0.16 3.70 7.52 -2.85 -0.02 3.67 16 17 N -0.60 -14.93 3.59 -169.74 -0.61 -15.54 16 18 C -0.22 -6.08 10.51 -15.06 -0.16 -6.23 16 19 H 0.08 2.09 7.49 -52.49 -0.39 1.69 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -27.58 11.40 55.49 0.63 -26.95 16 22 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 25 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.73 7.40 -51.93 -0.38 0.34 16 30 H 0.08 0.58 8.11 -51.93 -0.42 0.15 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 33 H 0.08 0.55 8.07 -51.93 -0.42 0.14 16 34 H 0.11 0.93 8.07 -51.93 -0.42 0.51 16 35 H 0.12 1.65 7.42 -51.93 -0.39 1.27 16 36 H 0.40 6.34 8.34 -40.82 -0.34 6.00 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.90 7.18 -51.93 -0.37 1.52 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -38.65 363.54 -6.90 -45.55 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.83 Total: 1.82 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 0.91 Total: 19.09 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.73 Total: -62.73 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.70 Total: -27.16 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.65 -6.90 -45.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699622227.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.195 kcal (2) G-P(sol) polarization free energy of solvation -38.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds