Wall clock time and date at job start Fri Apr 10 2020 17:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99763 * 2 1 4 4 N 1.34772 * 119.99958 * 180.02562 * 2 1 3 5 5 C 1.46506 * 119.99942 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47056 * 185.08220 * 5 4 2 7 7 N 1.46907 * 109.54277 * 54.50608 * 6 5 4 8 8 C 1.46897 * 111.00047 * 56.77910 * 7 6 5 9 9 C 1.50698 * 109.46844 * 179.42716 * 8 7 6 10 10 O 1.21288 * 120.00233 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.37102 * 120.00172 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99619 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00015 * 179.97438 * 12 11 9 15 15 N 1.31404 * 119.99757 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99825 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47239 * 90.00144 * 16 14 12 18 18 H 1.48507 * 109.46832 * 209.99533 * 16 14 12 19 19 H 1.48498 * 109.47623 * 329.99921 * 16 14 12 20 20 C 1.53178 * 109.54501 * 294.23854 * 6 5 4 21 21 C 1.53091 * 109.16157 * 183.15083 * 20 6 5 22 22 O 1.42903 * 109.41405 * 57.61064 * 21 20 6 23 23 C 1.42902 * 114.09826 * 298.83484 * 22 21 20 24 24 C 1.53093 * 109.40803 * 61.16153 * 23 22 21 25 25 H 1.09002 * 109.46839 * 270.00074 * 1 2 3 26 26 H 1.08995 * 109.47398 * 29.99835 * 1 2 3 27 27 H 1.09002 * 109.47034 * 150.00030 * 1 2 3 28 28 H 0.96999 * 120.00400 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.47489 * 65.08413 * 5 4 2 30 30 H 1.08998 * 109.46785 * 305.07751 * 5 4 2 31 31 H 1.00902 * 110.99975 * 292.82246 * 7 6 5 32 32 H 1.08998 * 109.47414 * 299.42844 * 8 7 6 33 33 H 1.09004 * 109.47163 * 59.43267 * 8 7 6 34 34 H 0.97003 * 120.00109 * 0.02562 * 11 9 8 35 35 H 0.96998 * 120.00237 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.52200 * 303.05850 * 20 6 5 37 37 H 1.09000 * 109.51926 * 63.24913 * 20 6 5 38 38 H 1.08996 * 109.48451 * 297.62309 * 21 20 6 39 39 H 1.09008 * 109.48476 * 177.59689 * 21 20 6 40 40 H 1.08995 * 109.47956 * 301.18402 * 23 22 21 41 41 H 1.09000 * 109.48827 * 181.14694 * 23 22 21 42 42 H 1.09006 * 109.51766 * 182.48626 * 24 23 22 43 43 H 1.08996 * 109.57774 * 62.33302 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6039 -0.1285 7 7 3.5623 -3.2316 -1.3167 8 6 3.8570 -2.4523 -2.5265 9 6 3.2453 -3.1330 -3.7238 10 8 2.6246 -4.1654 -3.5831 11 7 3.3872 -2.5939 -4.9509 12 6 2.8302 -3.2128 -6.0402 13 1 2.2775 -4.1321 -5.9148 14 6 2.9761 -2.6567 -7.3052 15 7 2.4427 -3.2503 -8.3492 16 14 3.9315 -1.0663 -7.5218 17 1 5.3628 -1.3779 -7.7657 18 1 3.3845 -0.3140 -8.6795 19 1 3.8067 -0.2425 -6.2926 20 6 3.7675 -3.3993 1.1216 21 6 4.3492 -4.8118 1.0193 22 8 5.7678 -4.7314 0.8666 23 6 6.1896 -4.0395 -0.3104 24 6 5.6819 -2.5960 -0.2615 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6959 -2.0072 -0.0005 29 1 4.0089 -0.7349 0.9325 30 1 4.0095 -0.5760 -0.8404 31 1 2.5679 -3.3572 -1.2006 32 1 3.4385 -1.4510 -2.4246 33 1 4.9366 -2.3831 -2.6602 34 1 3.8833 -1.7680 -5.0635 35 1 2.5441 -2.8619 -9.2323 36 1 4.1666 -2.9043 2.0069 37 1 2.6815 -3.4570 1.1937 38 1 3.9190 -5.3205 0.1567 39 1 4.1121 -5.3691 1.9256 40 1 5.7834 -4.5381 -1.1904 41 1 7.2784 -4.0403 -0.3621 42 1 5.9649 -2.0791 -1.1786 43 1 6.1196 -2.0837 0.5952 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699879219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:15 Heat of formation + Delta-G solvation = -112.587636 kcal Electronic energy + Delta-G solvation = -25677.595416 eV Core-core repulsion = 21950.937937 eV Total energy + Delta-G solvation = -3726.657479 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65479 -39.26577 -38.33253 -36.62445 -34.16686 -33.79587 -31.89575 -31.57551 -31.17013 -30.24807 -27.17037 -26.59774 -24.30173 -23.51026 -22.59207 -20.74686 -19.47508 -19.25225 -18.43127 -17.31359 -16.60822 -16.44453 -16.00352 -15.67071 -15.53228 -15.42247 -14.94330 -14.80187 -14.49289 -14.25539 -13.66615 -13.43174 -13.30604 -13.01280 -12.77063 -12.58204 -12.49059 -12.38809 -12.32917 -12.19807 -11.90378 -11.65981 -11.35371 -11.18609 -10.66529 -10.61891 -10.36026 -10.07074 -10.01998 -9.62621 -9.59392 -9.30698 -8.69130 -8.28881 -8.22191 -6.35673 -3.87304 2.47781 2.98904 3.00325 3.04296 3.12873 3.66839 3.85866 3.94862 4.06744 4.36311 4.41100 4.65588 4.66658 4.80846 4.94871 5.04846 5.15654 5.17251 5.25000 5.28151 5.34440 5.41715 5.44450 5.54813 5.60339 5.64323 5.65164 5.72105 5.79903 5.86071 5.91263 5.97763 6.12897 6.17284 6.89969 7.22862 7.24703 7.34783 7.52691 8.02626 8.09034 8.54164 8.89814 9.37431 9.76363 10.77262 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004950 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.635492 B = 5654.863178 C = 6990.032953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.729 5.729 5 C 0.088 3.912 6 C 0.102 3.898 7 N -0.648 5.648 8 C 0.041 3.959 9 C 0.450 3.550 10 O -0.566 6.566 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.043 3.957 15 N -0.880 5.880 16 Si 0.878 3.122 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.270 1.270 20 C -0.139 4.139 21 C 0.067 3.933 22 O -0.387 6.387 23 C 0.068 3.932 24 C -0.140 4.140 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.399 0.601 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.348 0.652 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.370 0.630 35 H 0.274 0.726 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.442 4.001 19.264 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.299 3.701 3 O -0.426 6.426 4 N -0.383 5.383 5 C -0.038 4.038 6 C 0.010 3.990 7 N -0.281 5.281 8 C -0.092 4.092 9 C 0.236 3.764 10 O -0.448 6.448 11 N -0.228 5.228 12 C -0.435 4.435 13 H 0.137 0.863 14 C -0.160 4.160 15 N -0.519 5.519 16 Si 0.704 3.296 17 H -0.195 1.195 18 H -0.201 1.201 19 H -0.195 1.195 20 C -0.178 4.178 21 C -0.010 4.010 22 O -0.305 6.305 23 C -0.008 4.008 24 C -0.178 4.178 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.235 0.765 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.168 0.832 32 H 0.067 0.933 33 H 0.108 0.892 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.056 3.525 19.139 19.699 hybrid contribution -0.336 1.929 -0.552 2.034 sum 2.720 5.454 18.587 19.561 Atomic orbital electron populations 1.21894 0.91513 1.05331 1.04645 1.20828 0.90705 0.83307 0.75234 1.90721 1.70912 1.31400 1.49560 1.46072 1.07330 1.08944 1.75930 1.22111 0.80214 0.98608 1.02832 1.21290 0.95771 0.90528 0.91435 1.60296 1.19041 1.48915 0.99860 1.21822 1.01664 0.95307 0.90375 1.19628 0.85852 0.87338 0.83612 1.90561 1.44646 1.24573 1.85006 1.42211 1.49807 1.23803 1.06955 1.19417 1.31318 1.09173 0.83553 0.86252 1.25030 0.97610 0.98158 0.95209 1.69613 1.43788 1.39400 0.99133 0.86699 0.80831 0.83405 0.78636 1.19522 1.20108 1.19549 1.22216 1.01227 0.97726 0.96584 1.22476 0.81384 0.95043 1.02116 1.87863 1.21969 1.76672 1.44028 1.22465 0.98993 0.90607 0.88771 1.22190 0.93244 0.99325 1.03050 0.88901 0.88768 0.89866 0.76527 0.91242 0.90705 0.83166 0.93299 0.89211 0.79723 0.91555 0.90545 0.91077 0.91297 0.89601 0.91188 0.89480 0.90402 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.30 36.01 0.37 -1.05 16 2 C 0.51 6.10 7.94 -10.99 -0.09 6.02 16 3 O -0.55 -8.93 17.09 5.56 0.09 -8.84 16 4 N -0.73 -7.38 5.12 -60.29 -0.31 -7.69 16 5 C 0.09 0.94 3.92 -4.04 -0.02 0.92 16 6 C 0.10 1.04 0.30 -131.42 -0.04 1.00 16 7 N -0.65 -8.44 4.43 -101.03 -0.45 -8.88 16 8 C 0.04 0.62 5.38 -4.98 -0.03 0.60 16 9 C 0.45 9.68 7.82 -10.98 -0.09 9.60 16 10 O -0.57 -14.30 15.79 5.55 0.09 -14.21 16 11 N -0.59 -13.68 5.09 -10.96 -0.06 -13.73 16 12 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 13 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 14 C 0.04 1.17 5.50 -17.47 -0.10 1.08 16 15 N -0.88 -25.43 13.96 55.50 0.77 -24.65 16 16 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 20 C -0.14 -1.24 4.87 -26.59 -0.13 -1.37 16 21 C 0.07 0.69 6.68 37.20 0.25 0.94 16 22 O -0.39 -4.72 10.77 -35.23 -0.38 -5.10 16 23 C 0.07 0.77 6.68 37.21 0.25 1.02 16 24 C -0.14 -1.41 4.73 -26.59 -0.13 -1.53 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.40 3.33 6.43 -40.82 -0.26 3.07 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.93 6.69 -51.93 -0.35 0.58 16 31 H 0.35 4.60 7.06 -39.29 -0.28 4.32 16 32 H 0.05 0.72 6.41 -51.93 -0.33 0.39 16 33 H 0.09 1.25 6.30 -51.93 -0.33 0.92 16 34 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 35 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.54 7.22 -51.93 -0.37 0.16 16 38 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 39 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 40 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.78 6.33 -51.93 -0.33 0.45 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -34.20 343.53 -5.89 -40.09 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -6.23 Total: 14.67 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 0.11 Total: 8.56 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -0.04 Total: -54.96 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.20 Total: -28.15 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.20 -5.89 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699879219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.495 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds