Wall clock time and date at job start Fri Apr 10 2020 17:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99763 * 2 1 4 4 N 1.34772 * 119.99958 * 180.02562 * 2 1 3 5 5 C 1.46506 * 119.99942 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47056 * 185.08220 * 5 4 2 7 7 N 1.46907 * 109.54277 * 54.50608 * 6 5 4 8 8 C 1.46897 * 111.00047 * 56.77910 * 7 6 5 9 9 C 1.50698 * 109.46844 * 179.42716 * 8 7 6 10 10 O 1.21288 * 120.00233 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.37102 * 120.00172 * 180.02562 * 11 9 8 13 13 H 1.07999 * 119.99619 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00015 * 179.97438 * 12 11 9 15 15 N 1.31404 * 119.99757 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99825 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47239 * 90.00144 * 16 14 12 18 18 H 1.48507 * 109.46832 * 209.99533 * 16 14 12 19 19 H 1.48498 * 109.47623 * 329.99921 * 16 14 12 20 20 C 1.53178 * 109.54501 * 294.23854 * 6 5 4 21 21 C 1.53091 * 109.16157 * 183.15083 * 20 6 5 22 22 O 1.42903 * 109.41405 * 57.61064 * 21 20 6 23 23 C 1.42902 * 114.09826 * 298.83484 * 22 21 20 24 24 C 1.53093 * 109.40803 * 61.16153 * 23 22 21 25 25 H 1.09002 * 109.46839 * 270.00074 * 1 2 3 26 26 H 1.08995 * 109.47398 * 29.99835 * 1 2 3 27 27 H 1.09002 * 109.47034 * 150.00030 * 1 2 3 28 28 H 0.96999 * 120.00400 * 359.97438 * 4 2 1 29 29 H 1.08998 * 109.47489 * 65.08413 * 5 4 2 30 30 H 1.08998 * 109.46785 * 305.07751 * 5 4 2 31 31 H 1.00902 * 110.99975 * 292.82246 * 7 6 5 32 32 H 1.08998 * 109.47414 * 299.42844 * 8 7 6 33 33 H 1.09004 * 109.47163 * 59.43267 * 8 7 6 34 34 H 0.97003 * 120.00109 * 0.02562 * 11 9 8 35 35 H 0.96998 * 120.00237 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.52200 * 303.05850 * 20 6 5 37 37 H 1.09000 * 109.51926 * 63.24913 * 20 6 5 38 38 H 1.08996 * 109.48451 * 297.62309 * 21 20 6 39 39 H 1.09008 * 109.48476 * 177.59689 * 21 20 6 40 40 H 1.08995 * 109.47956 * 301.18402 * 23 22 21 41 41 H 1.09000 * 109.48827 * 181.14694 * 23 22 21 42 42 H 1.09006 * 109.51766 * 182.48626 * 24 23 22 43 43 H 1.08996 * 109.57774 * 62.33302 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 6 4.1559 -2.6039 -0.1285 7 7 3.5623 -3.2316 -1.3167 8 6 3.8570 -2.4523 -2.5265 9 6 3.2453 -3.1330 -3.7238 10 8 2.6246 -4.1654 -3.5831 11 7 3.3872 -2.5939 -4.9509 12 6 2.8302 -3.2128 -6.0402 13 1 2.2775 -4.1321 -5.9148 14 6 2.9761 -2.6567 -7.3052 15 7 2.4427 -3.2503 -8.3492 16 14 3.9315 -1.0663 -7.5218 17 1 5.3628 -1.3779 -7.7657 18 1 3.3845 -0.3140 -8.6795 19 1 3.8067 -0.2425 -6.2926 20 6 3.7675 -3.3993 1.1216 21 6 4.3492 -4.8118 1.0193 22 8 5.7678 -4.7314 0.8666 23 6 6.1896 -4.0395 -0.3104 24 6 5.6819 -2.5960 -0.2615 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6959 -2.0072 -0.0005 29 1 4.0089 -0.7349 0.9325 30 1 4.0095 -0.5760 -0.8404 31 1 2.5679 -3.3572 -1.2006 32 1 3.4385 -1.4510 -2.4246 33 1 4.9366 -2.3831 -2.6602 34 1 3.8833 -1.7680 -5.0635 35 1 2.5441 -2.8619 -9.2323 36 1 4.1666 -2.9043 2.0069 37 1 2.6815 -3.4570 1.1937 38 1 3.9190 -5.3205 0.1567 39 1 4.1121 -5.3691 1.9256 40 1 5.7834 -4.5381 -1.1904 41 1 7.2784 -4.0403 -0.3621 42 1 5.9649 -2.0791 -1.1786 43 1 6.1196 -2.0837 0.5952 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699879219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:14 Heat of formation + Delta-G solvation = -141.699746 kcal Electronic energy + Delta-G solvation = -25678.857811 eV Core-core repulsion = 21950.937937 eV Total energy + Delta-G solvation = -3727.919875 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60324 -40.29779 -39.95341 -37.64613 -36.03097 -34.88129 -33.77213 -32.78808 -32.01661 -30.98568 -28.47749 -27.65969 -25.86899 -24.49687 -23.49523 -21.64601 -21.29079 -20.35009 -20.13051 -18.19233 -17.97088 -17.35057 -17.09555 -16.88157 -16.62284 -16.60090 -16.32490 -15.89073 -15.62560 -15.44993 -15.06756 -14.71702 -14.51961 -14.28622 -14.10335 -13.76679 -13.48318 -13.38437 -13.27320 -13.10156 -12.97672 -12.94589 -12.70571 -12.43969 -12.15426 -12.01170 -11.53387 -11.49018 -11.20705 -11.02495 -10.51331 -10.44849 -10.26030 -10.20032 -9.40153 -8.43135 -6.03239 1.27976 1.31997 1.40531 1.58349 1.92774 2.16629 2.19796 2.64732 3.08570 3.13263 3.29055 3.56244 3.61461 3.85867 3.90885 4.08236 4.15000 4.30721 4.37224 4.43340 4.45357 4.51328 4.56796 4.62430 4.66699 4.73499 4.78322 4.88694 4.91380 5.04913 5.09641 5.16476 5.27273 5.32818 5.50369 5.84427 5.97029 6.28491 6.37515 6.43644 6.57029 6.86336 7.16366 7.37867 7.92978 8.74262 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004950 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.635492 B = 5654.863178 C = 6990.032953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.597 6.597 4 N -0.720 5.720 5 C 0.092 3.908 6 C 0.110 3.890 7 N -0.655 5.655 8 C 0.059 3.941 9 C 0.453 3.547 10 O -0.607 6.607 11 N -0.593 5.593 12 C -0.325 4.325 13 H 0.060 0.940 14 C -0.011 4.011 15 N -0.932 5.932 16 Si 0.958 3.042 17 H -0.256 1.256 18 H -0.275 1.275 19 H -0.238 1.238 20 C -0.133 4.133 21 C 0.064 3.936 22 O -0.401 6.401 23 C 0.068 3.932 24 C -0.139 4.139 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.409 0.591 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.346 0.654 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.387 0.613 35 H 0.279 0.721 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.104 0.896 40 H 0.044 0.956 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 6.059 21.274 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.295 3.705 3 O -0.478 6.478 4 N -0.374 5.374 5 C -0.034 4.034 6 C 0.018 3.982 7 N -0.289 5.289 8 C -0.073 4.073 9 C 0.241 3.759 10 O -0.491 6.491 11 N -0.234 5.234 12 C -0.455 4.455 13 H 0.078 0.922 14 C -0.210 4.210 15 N -0.573 5.573 16 Si 0.779 3.221 17 H -0.181 1.181 18 H -0.200 1.200 19 H -0.162 1.162 20 C -0.171 4.171 21 C -0.013 4.013 22 O -0.320 6.320 23 C -0.008 4.008 24 C -0.177 4.177 25 H 0.135 0.865 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.247 0.753 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.167 0.833 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.222 0.778 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.122 0.878 40 H 0.062 0.938 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.162 5.553 21.185 22.293 hybrid contribution -0.734 1.114 -1.093 1.724 sum 3.428 6.667 20.092 21.445 Atomic orbital electron populations 1.21921 0.88756 1.05818 1.06346 1.21475 0.92113 0.82802 0.74114 1.90700 1.72079 1.33046 1.52004 1.46048 1.07286 1.09120 1.74918 1.22043 0.80474 0.98246 1.02600 1.21307 0.95824 0.90371 0.90653 1.60284 1.19200 1.49226 1.00145 1.21650 1.02310 0.95048 0.88291 1.20803 0.84022 0.86495 0.84613 1.90545 1.46058 1.26598 1.85873 1.42067 1.50429 1.24489 1.06438 1.19001 1.32327 1.08255 0.85872 0.92220 1.26010 0.98388 1.02563 0.94034 1.69784 1.45631 1.41868 0.99977 0.85457 0.79158 0.77755 0.79753 1.18065 1.20000 1.16160 1.22194 1.02251 0.96497 0.96133 1.22562 0.80599 0.96086 1.02038 1.87848 1.22952 1.77022 1.44145 1.22472 0.99787 0.91016 0.87573 1.22210 0.92899 0.98554 1.04030 0.86537 0.89207 0.88401 0.75347 0.90614 0.92054 0.83311 0.91814 0.86998 0.77834 0.91156 0.89188 0.89508 0.93438 0.87836 0.93770 0.88123 0.90032 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.30 71.24 0.73 -1.64 16 2 C 0.51 11.07 7.94 87.66 0.70 11.77 16 3 O -0.60 -18.70 17.09 -3.03 -0.05 -18.75 16 4 N -0.72 -12.83 5.12 -463.06 -2.37 -15.20 16 5 C 0.09 1.72 3.92 86.38 0.34 2.06 16 6 C 0.11 1.97 0.30 3.64 0.00 1.97 16 7 N -0.66 -16.02 4.43 -473.55 -2.10 -18.12 16 8 C 0.06 1.70 5.38 85.56 0.46 2.16 16 9 C 0.45 19.42 7.82 87.66 0.69 20.11 16 10 O -0.61 -31.52 15.79 -3.05 -0.05 -31.57 16 11 N -0.59 -27.40 5.09 -306.98 -1.56 -28.97 16 12 C -0.33 -18.71 10.16 84.04 0.85 -17.86 16 13 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 15 N -0.93 -55.66 13.96 21.66 0.30 -55.35 16 16 Si 0.96 39.01 27.74 68.60 1.90 40.91 16 17 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.24 -8.38 6.52 99.48 0.65 -7.73 16 20 C -0.13 -1.99 4.87 30.68 0.15 -1.84 16 21 C 0.06 1.21 6.68 72.01 0.48 1.69 16 22 O -0.40 -9.10 10.77 -148.98 -1.60 -10.71 16 23 C 0.07 1.43 6.68 72.01 0.48 1.91 16 24 C -0.14 -2.41 4.73 30.68 0.15 -2.27 16 25 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.41 5.73 6.43 -92.71 -0.60 5.14 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.35 6.69 -2.39 -0.02 1.34 16 31 H 0.35 8.67 7.06 -89.69 -0.63 8.04 16 32 H 0.06 1.70 6.41 -2.39 -0.02 1.69 16 33 H 0.11 2.79 6.30 -2.39 -0.02 2.78 16 34 H 0.39 15.19 5.76 -92.71 -0.53 14.65 16 35 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.04 7.22 -2.39 -0.02 1.02 16 38 H 0.05 1.10 7.75 -2.39 -0.02 1.09 16 39 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.04 1.15 7.75 -2.39 -0.02 1.13 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.37 6.33 -2.38 -0.02 1.36 16 43 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -78.95 343.53 -0.80 -79.75 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: -0.76 Total: 40.08 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 5.49 Total: 17.92 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -5.73 Total: -117.64 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -1.70 Total: -61.03 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 1.90 Total: 40.91 kcal Total: -78.95 -0.80 -79.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699879219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.949 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds