Wall clock time and date at job start Fri Apr 10 2020 17:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21272 * 120.00363 * 2 1 4 4 N 1.34782 * 119.99739 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00165 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.47020 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00395 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99610 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99897 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47001 * 185.05238 * 9 8 6 11 11 N 1.46506 * 109.54295 * 305.14052 * 10 9 8 12 12 C 1.36939 * 119.99939 * 302.39737 * 11 10 9 13 13 H 1.08003 * 120.00031 * 354.44947 * 12 11 10 14 14 C 1.38807 * 119.99733 * 174.44100 * 12 11 10 15 15 N 1.31617 * 120.00410 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99976 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47348 * 90.00386 * 16 14 12 18 18 H 1.48501 * 109.47320 * 210.00334 * 16 14 12 19 19 H 1.48507 * 109.47265 * 330.00410 * 16 14 12 20 20 C 1.53180 * 109.54064 * 184.96858 * 10 9 8 21 21 C 1.53109 * 109.15669 * 183.23864 * 20 10 9 22 22 O 1.42907 * 109.48633 * 57.47277 * 21 20 10 23 23 C 1.42906 * 114.09799 * 298.88880 * 22 21 20 24 24 C 1.53094 * 109.41477 * 61.15758 * 23 22 21 25 25 H 1.08993 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47548 * 300.01003 * 1 2 3 27 27 H 1.08999 * 109.46635 * 60.00327 * 1 2 3 28 28 H 0.96998 * 119.99814 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.46835 * 59.99976 * 5 4 2 30 30 H 1.09002 * 109.47002 * 300.00283 * 5 4 2 31 31 H 0.97002 * 120.00062 * 0.02562 * 8 6 5 32 32 H 1.08994 * 109.46685 * 65.05267 * 9 8 6 33 33 H 1.08998 * 109.47105 * 305.05145 * 9 8 6 34 34 H 0.97001 * 120.00037 * 122.39366 * 11 10 9 35 35 H 0.97001 * 120.00451 * 179.97438 * 15 14 12 36 36 H 1.08993 * 109.52076 * 303.05046 * 20 10 9 37 37 H 1.08995 * 109.52586 * 63.24661 * 20 10 9 38 38 H 1.09005 * 109.40439 * 297.49266 * 21 20 10 39 39 H 1.08998 * 109.49390 * 177.50754 * 21 20 10 40 40 H 1.09005 * 109.47728 * 301.17832 * 23 22 21 41 41 H 1.08994 * 109.49232 * 181.14613 * 23 22 21 42 42 H 1.08999 * 109.52381 * 182.48901 * 24 23 22 43 43 H 1.08998 * 109.57528 * 62.33023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1674 0.0011 6 6 4.1480 -2.5882 0.0010 7 8 3.3599 -3.5100 0.0000 8 7 5.4731 -2.8345 0.0009 9 6 5.9614 -4.2158 0.0014 10 6 7.4861 -4.2176 0.1282 11 7 8.0672 -3.3912 -0.9328 12 6 7.8050 -3.6786 -2.2457 13 1 7.2448 -4.5655 -2.5029 14 6 8.2592 -2.8302 -3.2460 15 7 8.9422 -1.7496 -2.9326 16 14 7.9010 -3.2219 -5.0370 17 1 6.6143 -2.5951 -5.4331 18 1 8.9943 -2.6884 -5.8887 19 1 7.8095 -4.6936 -5.2132 20 6 8.0088 -5.6522 0.0045 21 6 9.5256 -5.6540 0.2132 22 8 9.8318 -5.0889 1.4896 23 6 9.4090 -3.7326 1.6438 24 6 7.8874 -3.6538 1.4947 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.6958 -2.0073 0.0005 29 1 4.0088 -0.6533 0.8912 30 1 4.0095 -0.6537 -0.8889 31 1 6.1035 -2.0973 0.0013 32 1 5.6737 -4.7031 -0.9302 33 1 5.5261 -4.7547 0.8429 34 1 8.6375 -2.6403 -0.7052 35 1 9.2599 -1.1569 -3.6317 36 1 7.5374 -6.2782 0.7620 37 1 7.7758 -6.0406 -0.9869 38 1 9.9996 -5.0620 -0.5697 39 1 9.8974 -6.6777 0.1702 40 1 9.8815 -3.1155 0.8795 41 1 9.6966 -3.3720 2.6313 42 1 7.5675 -2.6144 1.5680 43 1 7.4125 -4.2375 2.2833 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699881175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:19 Heat of formation + Delta-G solvation = -113.265022 kcal Electronic energy + Delta-G solvation = -25367.187023 eV Core-core repulsion = 21640.500170 eV Total energy + Delta-G solvation = -3726.686853 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.09480 -39.44730 -38.65582 -35.95168 -34.40317 -33.55984 -32.29362 -30.70966 -30.56793 -29.24527 -27.95947 -25.83761 -24.12534 -23.09524 -22.11709 -20.62673 -20.21087 -18.73397 -17.69251 -17.23511 -16.50999 -16.03974 -15.92454 -15.58220 -15.49015 -15.25241 -14.82959 -14.52362 -14.34825 -13.93685 -13.72576 -13.39341 -13.08086 -12.88661 -12.78170 -12.69254 -12.27984 -12.13080 -11.96339 -11.75375 -11.51575 -10.97299 -10.94973 -10.85791 -10.40273 -10.11969 -10.03366 -9.88017 -9.79288 -9.71463 -9.21393 -9.17985 -8.90319 -8.60399 -7.17546 -5.93008 -3.24222 2.55709 2.81444 2.96825 3.34270 3.40796 3.42144 3.70176 4.31716 4.45649 4.73146 4.92560 5.06182 5.12864 5.18732 5.22329 5.28354 5.37300 5.47877 5.48826 5.49099 5.58364 5.64722 5.70628 5.92586 6.02023 6.05452 6.11397 6.24021 6.26845 6.33091 6.46119 6.49490 6.64469 6.71356 6.86370 7.45073 7.58273 7.65122 7.83602 8.14956 8.23860 8.44668 9.36913 9.86482 10.23048 11.28466 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.004721 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.097631 B = 5928.976146 C = 7370.115879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.510 3.490 3 O -0.551 6.551 4 N -0.715 5.715 5 C 0.097 3.903 6 C 0.506 3.494 7 O -0.558 6.558 8 N -0.691 5.691 9 C 0.120 3.880 10 C 0.189 3.811 11 N -0.713 5.713 12 C -0.240 4.240 13 H 0.070 0.930 14 C -0.004 4.004 15 N -0.928 5.928 16 Si 0.902 3.098 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 C -0.155 4.155 21 C 0.070 3.930 22 O -0.393 6.393 23 C 0.066 3.934 24 C -0.151 4.151 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.411 0.589 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.408 0.592 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -1.744 8.963 12.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.297 3.703 3 O -0.429 6.429 4 N -0.371 5.371 5 C -0.031 4.031 6 C 0.291 3.709 7 O -0.438 6.438 8 N -0.341 5.341 9 C -0.006 4.006 10 C 0.097 3.903 11 N -0.356 5.356 12 C -0.371 4.371 13 H 0.088 0.912 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.733 3.267 17 H -0.218 1.218 18 H -0.218 1.218 19 H -0.208 1.208 20 C -0.195 4.195 21 C -0.007 4.007 22 O -0.312 6.312 23 C -0.011 4.011 24 C -0.190 4.190 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.249 0.751 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.244 0.756 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.727 -1.807 8.926 12.613 hybrid contribution -0.074 0.145 -1.394 1.404 sum -8.802 -1.662 7.531 11.703 Atomic orbital electron populations 1.21816 0.91417 1.04347 1.05229 1.20810 0.90695 0.83172 0.75640 1.90735 1.70736 1.31433 1.50001 1.45866 1.06302 1.09786 1.75159 1.21083 0.81942 0.95117 1.04935 1.20341 0.83268 0.90560 0.76774 1.90639 1.55452 1.45954 1.51759 1.45668 1.05965 1.10280 1.72191 1.21802 0.95859 0.81763 1.01142 1.19841 0.90236 0.91659 0.88592 1.42515 1.57687 1.34320 1.01075 1.19045 1.29775 1.05716 0.82542 0.91202 1.24690 1.00649 0.96906 0.97793 1.69632 1.41462 1.14359 1.32089 0.86283 0.77386 0.77620 0.85412 1.21763 1.21790 1.20757 1.22496 0.96941 0.97993 1.02084 1.22447 0.94910 0.97933 0.85380 1.87808 1.80884 1.27134 1.35347 1.22468 0.93547 0.83894 1.01231 1.22360 0.97474 1.01668 0.97462 0.90439 0.88734 0.88688 0.75071 0.88632 0.88139 0.75573 0.91481 0.92544 0.77977 0.93361 0.92568 0.90512 0.91495 0.90296 0.92298 0.89951 0.91136 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.39 36.00 0.37 -0.96 16 2 C 0.51 6.48 7.94 -10.98 -0.09 6.40 16 3 O -0.55 -9.32 17.10 5.56 0.10 -9.23 16 4 N -0.72 -9.01 5.53 -61.47 -0.34 -9.35 16 5 C 0.10 1.33 6.15 -5.19 -0.03 1.30 16 6 C 0.51 8.01 7.90 -10.99 -0.09 7.92 16 7 O -0.56 -10.07 15.66 5.56 0.09 -9.99 16 8 N -0.69 -11.10 5.12 -60.30 -0.31 -11.40 16 9 C 0.12 2.03 4.29 -4.04 -0.02 2.01 16 10 C 0.19 3.16 0.41 -131.63 -0.05 3.11 16 11 N -0.71 -14.66 3.66 -47.06 -0.17 -14.83 16 12 C -0.24 -5.75 8.69 -15.06 -0.13 -5.89 16 13 H 0.07 1.69 6.76 -52.48 -0.35 1.34 16 14 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 15 N -0.93 -25.38 13.06 55.49 0.72 -24.65 16 16 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.15 -2.52 4.85 -26.58 -0.13 -2.65 16 21 C 0.07 1.15 6.68 37.21 0.25 1.40 16 22 O -0.39 -6.52 10.77 -35.23 -0.38 -6.90 16 23 C 0.07 0.98 6.67 37.21 0.25 1.23 16 24 C -0.15 -2.19 4.81 -26.59 -0.13 -2.32 16 25 H 0.08 0.46 7.91 -51.93 -0.41 0.05 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.41 4.78 7.27 -40.82 -0.30 4.48 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.41 6.50 7.45 -40.82 -0.30 6.20 16 32 H 0.07 1.29 7.45 -51.93 -0.39 0.90 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.39 8.56 6.67 -40.82 -0.27 8.29 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.34 7.23 -51.93 -0.38 0.96 16 38 H 0.07 1.27 7.75 -51.93 -0.40 0.86 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.98 7.05 -51.93 -0.37 0.61 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.96 7.41 -51.93 -0.38 0.58 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -30.41 350.60 -6.42 -36.83 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -6.49 Total: 16.65 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 0.11 Total: 11.36 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.10 Total: -60.24 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.20 Total: -26.11 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.41 -6.42 -36.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699881175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.438 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds