Wall clock time and date at job start Fri Apr 10 2020 17:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21272 * 120.00363 * 2 1 4 4 N 1.34782 * 119.99739 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00165 * 180.02562 * 4 2 1 6 6 C 1.50698 * 109.47020 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00395 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99610 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99897 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47001 * 185.05238 * 9 8 6 11 11 N 1.46506 * 109.54295 * 305.14052 * 10 9 8 12 12 C 1.36939 * 119.99939 * 302.39737 * 11 10 9 13 13 H 1.08003 * 120.00031 * 354.44947 * 12 11 10 14 14 C 1.38807 * 119.99733 * 174.44100 * 12 11 10 15 15 N 1.31617 * 120.00410 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99976 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47348 * 90.00386 * 16 14 12 18 18 H 1.48501 * 109.47320 * 210.00334 * 16 14 12 19 19 H 1.48507 * 109.47265 * 330.00410 * 16 14 12 20 20 C 1.53180 * 109.54064 * 184.96858 * 10 9 8 21 21 C 1.53109 * 109.15669 * 183.23864 * 20 10 9 22 22 O 1.42907 * 109.48633 * 57.47277 * 21 20 10 23 23 C 1.42906 * 114.09799 * 298.88880 * 22 21 20 24 24 C 1.53094 * 109.41477 * 61.15758 * 23 22 21 25 25 H 1.08993 * 109.47452 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47548 * 300.01003 * 1 2 3 27 27 H 1.08999 * 109.46635 * 60.00327 * 1 2 3 28 28 H 0.96998 * 119.99814 * 0.02562 * 4 2 1 29 29 H 1.09005 * 109.46835 * 59.99976 * 5 4 2 30 30 H 1.09002 * 109.47002 * 300.00283 * 5 4 2 31 31 H 0.97002 * 120.00062 * 0.02562 * 8 6 5 32 32 H 1.08994 * 109.46685 * 65.05267 * 9 8 6 33 33 H 1.08998 * 109.47105 * 305.05145 * 9 8 6 34 34 H 0.97001 * 120.00037 * 122.39366 * 11 10 9 35 35 H 0.97001 * 120.00451 * 179.97438 * 15 14 12 36 36 H 1.08993 * 109.52076 * 303.05046 * 20 10 9 37 37 H 1.08995 * 109.52586 * 63.24661 * 20 10 9 38 38 H 1.09005 * 109.40439 * 297.49266 * 21 20 10 39 39 H 1.08998 * 109.49390 * 177.50754 * 21 20 10 40 40 H 1.09005 * 109.47728 * 301.17832 * 23 22 21 41 41 H 1.08994 * 109.49232 * 181.14613 * 23 22 21 42 42 H 1.08999 * 109.52381 * 182.48901 * 24 23 22 43 43 H 1.08998 * 109.57528 * 62.33023 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6458 -1.1674 0.0011 6 6 4.1480 -2.5882 0.0010 7 8 3.3599 -3.5100 0.0000 8 7 5.4731 -2.8345 0.0009 9 6 5.9614 -4.2158 0.0014 10 6 7.4861 -4.2176 0.1282 11 7 8.0672 -3.3912 -0.9328 12 6 7.8050 -3.6786 -2.2457 13 1 7.2448 -4.5655 -2.5029 14 6 8.2592 -2.8302 -3.2460 15 7 8.9422 -1.7496 -2.9326 16 14 7.9010 -3.2219 -5.0370 17 1 6.6143 -2.5951 -5.4331 18 1 8.9943 -2.6884 -5.8887 19 1 7.8095 -4.6936 -5.2132 20 6 8.0088 -5.6522 0.0045 21 6 9.5256 -5.6540 0.2132 22 8 9.8318 -5.0889 1.4896 23 6 9.4090 -3.7326 1.6438 24 6 7.8874 -3.6538 1.4947 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.6958 -2.0073 0.0005 29 1 4.0088 -0.6533 0.8912 30 1 4.0095 -0.6537 -0.8889 31 1 6.1035 -2.0973 0.0013 32 1 5.6737 -4.7031 -0.9302 33 1 5.5261 -4.7547 0.8429 34 1 8.6375 -2.6403 -0.7052 35 1 9.2599 -1.1569 -3.6317 36 1 7.5374 -6.2782 0.7620 37 1 7.7758 -6.0406 -0.9869 38 1 9.9996 -5.0620 -0.5697 39 1 9.8974 -6.6777 0.1702 40 1 9.8815 -3.1155 0.8795 41 1 9.6966 -3.3720 2.6313 42 1 7.5675 -2.6144 1.5680 43 1 7.4125 -4.2375 2.2833 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699881175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:18 Heat of formation + Delta-G solvation = -137.272319 kcal Electronic energy + Delta-G solvation = -25368.228057 eV Core-core repulsion = 21640.500170 eV Total energy + Delta-G solvation = -3727.727887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34378 -40.67641 -39.90494 -37.35783 -35.55151 -35.11874 -33.91231 -31.97896 -31.45419 -30.95265 -29.09763 -27.05356 -25.91320 -24.42805 -23.44300 -21.65468 -21.51094 -20.16134 -19.17897 -18.68561 -17.68373 -17.28093 -17.11824 -16.91446 -16.79392 -16.53782 -16.07982 -15.97438 -15.78848 -15.38137 -15.23431 -14.66000 -14.25049 -14.16771 -14.07639 -13.67510 -13.43213 -13.30487 -13.16974 -12.96658 -12.88313 -12.86044 -12.68233 -12.22698 -12.10345 -11.71725 -11.52885 -11.14494 -11.13839 -11.08974 -10.88440 -10.33873 -10.30534 -9.96221 -8.99123 -7.91930 -5.18364 1.43903 1.47724 1.49236 1.52058 1.60175 1.87707 2.52458 2.57836 3.07484 3.41673 3.65194 3.74581 3.86990 3.93799 4.00769 4.15039 4.23747 4.26050 4.34566 4.46980 4.52048 4.60905 4.67319 4.75623 4.77189 4.83296 4.89642 5.03047 5.04296 5.09625 5.21342 5.25197 5.28038 5.34266 5.49880 5.62259 6.29550 6.36743 6.47477 6.53157 7.13020 7.16904 7.39591 8.08365 8.34579 9.30040 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.004721 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.097631 B = 5928.976146 C = 7370.115879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.505 3.495 3 O -0.599 6.599 4 N -0.712 5.712 5 C 0.101 3.899 6 C 0.509 3.491 7 O -0.578 6.578 8 N -0.691 5.691 9 C 0.127 3.873 10 C 0.186 3.814 11 N -0.714 5.714 12 C -0.213 4.213 13 H 0.068 0.932 14 C -0.059 4.059 15 N -0.958 5.958 16 Si 0.947 3.053 17 H -0.298 1.298 18 H -0.301 1.301 19 H -0.275 1.275 20 C -0.152 4.152 21 C 0.074 3.926 22 O -0.397 6.397 23 C 0.064 3.936 24 C -0.143 4.143 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.418 0.582 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.409 0.591 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.377 0.623 35 H 0.247 0.753 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.037 0.963 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.051 -2.645 10.539 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.295 3.705 3 O -0.480 6.480 4 N -0.368 5.368 5 C -0.026 4.026 6 C 0.295 3.705 7 O -0.460 6.460 8 N -0.341 5.341 9 C 0.001 3.999 10 C 0.095 3.905 11 N -0.355 5.355 12 C -0.345 4.345 13 H 0.086 0.914 14 C -0.252 4.252 15 N -0.609 5.609 16 Si 0.778 3.222 17 H -0.226 1.226 18 H -0.228 1.228 19 H -0.200 1.200 20 C -0.192 4.192 21 C -0.003 4.003 22 O -0.316 6.316 23 C -0.013 4.013 24 C -0.181 4.181 25 H 0.120 0.880 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.257 0.743 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.246 0.754 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.211 0.789 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.117 -2.767 10.524 14.858 hybrid contribution 0.322 0.341 -1.804 1.864 sum -9.795 -2.426 8.719 13.337 Atomic orbital electron populations 1.21865 0.87366 1.06346 1.06363 1.21705 0.92560 0.82164 0.74095 1.90714 1.72079 1.32952 1.52241 1.45928 1.05734 1.10303 1.74792 1.20996 0.82980 0.93550 1.05105 1.20603 0.82882 0.91097 0.75915 1.90626 1.55860 1.46813 1.52685 1.45674 1.06224 1.10013 1.72166 1.21677 0.95607 0.82170 1.00412 1.20051 0.89980 0.91590 0.88849 1.42551 1.57616 1.34464 1.00887 1.19206 1.26950 1.04396 0.83960 0.91412 1.25167 1.02180 0.97618 1.00216 1.69737 1.43661 1.15450 1.32058 0.85546 0.76281 0.77508 0.82816 1.22632 1.22827 1.20014 1.22454 0.97024 0.97659 1.02031 1.22389 0.94722 0.98511 0.84656 1.87810 1.81104 1.27797 1.34919 1.22583 0.93670 0.82941 1.02111 1.22316 0.97225 1.02484 0.96119 0.88045 0.87235 0.87725 0.74334 0.87279 0.89150 0.75442 0.94101 0.90982 0.78887 0.94353 0.90235 0.91994 0.94649 0.88217 0.94470 0.87087 0.90178 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.39 71.24 0.74 -1.39 16 2 C 0.51 12.20 7.94 87.66 0.70 12.89 16 3 O -0.60 -20.03 17.10 -3.00 -0.05 -20.08 16 4 N -0.71 -17.01 5.53 -466.79 -2.58 -19.59 16 5 C 0.10 2.71 6.15 85.63 0.53 3.24 16 6 C 0.51 15.56 7.90 87.66 0.69 16.25 16 7 O -0.58 -20.11 15.66 -3.01 -0.05 -20.16 16 8 N -0.69 -21.44 5.12 -463.07 -2.37 -23.81 16 9 C 0.13 4.11 4.29 86.38 0.37 4.48 16 10 C 0.19 5.97 0.41 3.72 0.00 5.97 16 11 N -0.71 -29.20 3.66 -302.80 -1.11 -30.31 16 12 C -0.21 -10.24 8.69 84.03 0.73 -9.51 16 13 H 0.07 3.27 6.76 -2.91 -0.02 3.25 16 14 C -0.06 -3.07 5.50 84.86 0.47 -2.61 16 15 N -0.96 -53.48 13.06 21.65 0.28 -53.19 16 16 Si 0.95 44.30 29.55 68.60 2.03 46.32 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 18 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 C -0.15 -4.68 4.85 30.69 0.15 -4.54 16 21 C 0.07 2.33 6.68 72.02 0.48 2.81 16 22 O -0.40 -12.35 10.77 -148.98 -1.60 -13.95 16 23 C 0.06 1.78 6.67 72.01 0.48 2.26 16 24 C -0.14 -3.80 4.81 30.68 0.15 -3.65 16 25 H 0.10 0.86 7.91 -2.39 -0.02 0.84 16 26 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.42 8.99 7.27 -92.71 -0.67 8.32 16 29 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.41 12.69 7.45 -92.71 -0.69 12.00 16 32 H 0.04 1.54 7.45 -2.39 -0.02 1.52 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.38 16.87 6.67 -92.71 -0.62 16.25 16 35 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 2.10 7.23 -2.39 -0.02 2.08 16 38 H 0.04 1.34 7.75 -2.38 -0.02 1.32 16 39 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.04 1.21 7.05 -2.38 -0.02 1.19 16 41 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.08 2.00 7.41 -2.39 -0.02 1.98 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -65.69 350.60 -0.90 -66.59 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.93 Total: 41.95 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 5.48 Total: 26.22 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -5.78 Total: -126.90 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -1.70 Total: -54.19 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -65.69 -0.90 -66.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699881175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.678 kcal (2) G-P(sol) polarization free energy of solvation -65.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds