Wall clock time and date at job start Fri Apr 10 2020 17:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 8 8 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 9 9 O 1.21278 * 120.00548 * 240.00156 * 8 2 1 10 10 N 1.34782 * 119.99764 * 60.00350 * 8 2 1 11 11 C 1.46505 * 120.00001 * 179.97438 * 10 8 2 12 12 C 1.52997 * 109.47119 * 179.97438 * 11 10 8 13 13 O 1.42896 * 110.88498 * 61.12077 * 12 11 10 14 14 C 1.55158 * 111.00428 * 185.00216 * 12 11 10 15 15 C 1.54321 * 102.94179 * 153.57675 * 14 12 11 16 16 N 1.47022 * 107.27327 * 337.80608 * 15 14 12 17 17 C 1.36938 * 125.64895 * 178.95671 * 16 15 14 18 18 H 1.07994 * 119.99886 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99866 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00370 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47254 * 119.99573 * 21 19 17 24 24 H 1.48497 * 109.47223 * 239.99344 * 21 19 17 25 25 C 1.47429 * 108.70409 * 358.94233 * 16 15 14 26 26 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 31 31 H 0.97005 * 119.99463 * 359.97438 * 6 5 4 32 32 H 0.96993 * 120.00115 * 179.97438 * 6 5 4 33 33 H 0.97002 * 119.99790 * 359.97438 * 10 8 2 34 34 H 1.08994 * 109.46912 * 300.00271 * 11 10 8 35 35 H 1.09000 * 109.46646 * 60.00028 * 11 10 8 36 36 H 0.96704 * 114.00530 * 300.70161 * 13 12 11 37 37 H 1.09002 * 110.71933 * 271.94051 * 14 12 11 38 38 H 1.09002 * 110.71961 * 35.03486 * 14 12 11 39 39 H 1.09001 * 109.88143 * 97.22531 * 15 14 12 40 40 H 1.08994 * 109.88028 * 218.23213 * 15 14 12 41 41 H 0.96992 * 120.00078 * 180.02562 * 20 19 17 42 42 H 1.08992 * 110.36327 * 265.29138 * 25 16 15 43 43 H 1.08996 * 110.37091 * 142.96311 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 7 1.9852 -0.3913 3.7002 7 8 1.0118 1.0875 2.3632 8 6 2.0324 -0.7105 -1.2304 9 8 2.7296 -1.6966 -1.1191 10 7 1.7068 -0.2501 -2.4546 11 6 2.1956 -0.9405 -3.6507 12 6 1.6850 -0.2197 -4.9000 13 8 2.1648 1.1256 -4.9438 14 6 2.0772 -0.9923 -6.1871 15 6 0.9807 -0.5736 -7.1891 16 7 -0.1772 -0.1201 -6.4049 17 6 -1.3538 0.3543 -6.9203 18 1 -2.1480 0.6637 -6.2571 19 6 -1.5257 0.4376 -8.2952 20 7 -0.5575 0.0611 -9.1035 21 14 -3.1310 1.0842 -8.9983 22 1 -4.0511 1.4376 -7.8877 23 1 -2.8608 2.2907 -9.8209 24 1 -3.7574 0.0377 -9.8455 25 6 0.1380 -0.2610 -4.9716 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.4891 -1.2152 3.7908 32 1 1.7289 0.1099 4.4900 33 1 1.1488 0.5384 -2.5436 34 1 3.2855 -0.9401 -3.6505 35 1 1.8325 -1.9682 -3.6508 36 1 1.9025 1.6618 -4.1829 37 1 3.0606 -0.6809 -6.5392 38 1 2.0542 -2.0681 -6.0133 39 1 1.3439 0.2393 -7.8179 40 1 0.7008 -1.4251 -7.8094 41 1 -0.6775 0.1197 -10.0642 42 1 -0.2339 -1.2131 -4.5933 43 1 -0.2901 0.5664 -4.4058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699903367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:24 Heat of formation + Delta-G solvation = -107.677405 kcal Electronic energy + Delta-G solvation = -24850.217404 eV Core-core repulsion = 21123.772848 eV Total energy + Delta-G solvation = -3726.444555 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50311 -39.52654 -38.43098 -35.12910 -34.42771 -34.10611 -34.01259 -32.09428 -29.67066 -28.55226 -27.79916 -25.80327 -24.38666 -23.13792 -21.09095 -20.32200 -20.06212 -19.65944 -17.99041 -17.63451 -16.91335 -16.67919 -16.13037 -15.91507 -15.48847 -15.25037 -14.69677 -14.40362 -14.20742 -13.97101 -13.69166 -13.45193 -13.17656 -12.94081 -12.80995 -12.23602 -12.19819 -11.92943 -11.70700 -11.48320 -11.34003 -10.99366 -10.89628 -10.72036 -10.34761 -10.26188 -10.19497 -10.08751 -10.04157 -9.78934 -9.68155 -9.41662 -9.09661 -8.59253 -6.83205 -5.71424 -3.05033 2.29895 2.56396 2.90613 3.37797 3.40004 3.45089 3.47840 4.27378 4.46872 4.49665 4.59829 4.69121 4.79298 4.92215 5.14390 5.15807 5.34889 5.38403 5.40412 5.52161 5.65188 5.67644 5.79859 5.84348 5.95758 6.08189 6.16895 6.32302 6.36926 6.40706 6.43317 6.55152 6.60944 6.92582 7.38913 7.53978 7.64101 7.83900 7.90121 7.98450 8.12895 8.25337 9.20997 9.81110 10.46194 11.40407 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.003034 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.464980 B = 9226.174718 C =10012.125104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 H 0.106 0.894 4 C -0.124 4.124 5 C 0.518 3.482 6 N -0.858 5.858 7 O -0.540 6.540 8 C 0.519 3.481 9 O -0.546 6.546 10 N -0.723 5.723 11 C 0.104 3.896 12 C 0.101 3.899 13 O -0.537 6.537 14 C -0.128 4.128 15 C 0.182 3.818 16 N -0.598 5.598 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.118 3.882 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.402 0.598 32 H 0.401 0.599 33 H 0.400 0.600 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.363 0.637 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 -2.394 22.332 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 H 0.124 0.876 4 C -0.165 4.165 5 C 0.304 3.696 6 N -0.421 5.421 7 O -0.417 6.417 8 C 0.305 3.695 9 O -0.424 6.424 10 N -0.375 5.375 11 C -0.020 4.020 12 C 0.059 3.941 13 O -0.341 6.341 14 C -0.167 4.167 15 C 0.057 3.943 16 N -0.325 5.325 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.009 4.009 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.231 0.769 32 H 0.231 0.769 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.209 0.791 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.213 -2.643 21.313 22.656 hybrid contribution -1.149 0.629 0.434 1.380 sum 6.064 -2.015 21.748 22.667 Atomic orbital electron populations 1.21932 0.92086 1.02657 1.04235 1.21009 0.98489 1.00934 0.91230 0.87606 1.21459 1.03928 1.00146 0.90936 1.20708 0.78296 0.85337 0.85300 1.43895 1.60289 1.29636 1.08317 1.90731 1.39647 1.24600 1.86726 1.20553 0.79840 0.84460 0.84644 1.90687 1.38290 1.26450 1.86953 1.45983 1.53494 1.32246 1.05780 1.22046 0.99735 0.97000 0.83257 1.22723 0.94982 0.82708 0.93677 1.86644 1.77318 1.22067 1.48028 1.22907 1.01375 0.98032 0.94355 1.21128 0.83878 0.98673 0.90629 1.44353 1.14115 1.75419 0.98566 1.19068 0.90673 1.35586 0.90384 0.90463 1.24808 0.98121 1.01533 0.95938 1.69969 1.31380 1.52982 1.02404 0.86037 0.82598 0.78150 0.78907 1.20527 1.21725 1.21757 1.22128 0.91552 0.98303 0.88966 0.92452 0.89616 0.91826 0.87979 0.87853 0.76927 0.76890 0.76519 0.90795 0.90404 0.79078 0.90966 0.90931 0.93138 0.93786 0.93757 0.95611 0.94385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.83 37.16 0.33 -1.11 16 2 C -0.09 -0.90 2.37 -91.77 -0.22 -1.12 16 3 H 0.11 0.97 7.95 -51.93 -0.41 0.56 16 4 C -0.12 -0.99 4.52 -27.88 -0.13 -1.12 16 5 C 0.52 4.31 7.82 -10.98 -0.09 4.23 16 6 N -0.86 -3.99 8.87 31.22 0.28 -3.72 16 7 O -0.54 -6.49 14.80 5.56 0.08 -6.41 16 8 C 0.52 6.26 7.15 -10.98 -0.08 6.18 16 9 O -0.55 -8.23 15.92 5.56 0.09 -8.14 16 10 N -0.72 -8.53 5.07 -60.29 -0.31 -8.83 16 11 C 0.10 1.45 4.88 -4.04 -0.02 1.43 16 12 C 0.10 1.71 0.95 -88.47 -0.08 1.62 16 13 O -0.54 -9.20 13.19 -35.23 -0.46 -9.67 16 14 C -0.13 -2.40 6.16 -24.90 -0.15 -2.55 16 15 C 0.18 4.45 5.37 -3.07 -0.02 4.43 16 16 N -0.60 -15.18 3.39 -170.08 -0.58 -15.76 16 17 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.12 2.31 5.98 -2.52 -0.02 2.30 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.89 5.95 -51.93 -0.31 0.58 16 28 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.10 0.77 7.96 -51.93 -0.41 0.36 16 31 H 0.40 0.80 8.83 -40.82 -0.36 0.44 16 32 H 0.40 1.54 8.93 -40.82 -0.36 1.18 16 33 H 0.40 4.07 6.72 -40.82 -0.27 3.79 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 36 H 0.36 4.71 8.07 45.56 0.37 5.08 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 39 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 40 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.03 0.51 8.04 -51.93 -0.42 0.09 16 43 H 0.04 0.70 8.02 -51.93 -0.42 0.29 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -35.89 350.02 -6.64 -42.53 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.84 Total: 6.78 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.72 Total: 7.45 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.03 Total: -54.98 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.29 Total: -24.22 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.89 -6.64 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699903367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.147 kcal (2) G-P(sol) polarization free energy of solvation -35.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds