Wall clock time and date at job start Fri Apr 10 2020 17:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 5 5 C 1.50703 * 109.46912 * 294.99775 * 4 2 1 6 6 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 8 8 C 1.50700 * 109.47094 * 239.99428 * 2 1 3 9 9 O 1.21278 * 120.00548 * 240.00156 * 8 2 1 10 10 N 1.34782 * 119.99764 * 60.00350 * 8 2 1 11 11 C 1.46505 * 120.00001 * 179.97438 * 10 8 2 12 12 C 1.52997 * 109.47119 * 179.97438 * 11 10 8 13 13 O 1.42896 * 110.88498 * 61.12077 * 12 11 10 14 14 C 1.55158 * 111.00428 * 185.00216 * 12 11 10 15 15 C 1.54321 * 102.94179 * 153.57675 * 14 12 11 16 16 N 1.47022 * 107.27327 * 337.80608 * 15 14 12 17 17 C 1.36938 * 125.64895 * 178.95671 * 16 15 14 18 18 H 1.07994 * 119.99886 * 179.97438 * 17 16 15 19 19 C 1.38809 * 119.99866 * 359.97438 * 17 16 15 20 20 N 1.31620 * 120.00370 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47209 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47254 * 119.99573 * 21 19 17 24 24 H 1.48497 * 109.47223 * 239.99344 * 21 19 17 25 25 C 1.47429 * 108.70409 * 358.94233 * 16 15 14 26 26 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 28 28 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 29 29 H 1.09002 * 109.47398 * 54.99853 * 4 2 1 30 30 H 1.09001 * 109.47194 * 175.00033 * 4 2 1 31 31 H 0.97005 * 119.99463 * 359.97438 * 6 5 4 32 32 H 0.96993 * 120.00115 * 179.97438 * 6 5 4 33 33 H 0.97002 * 119.99790 * 359.97438 * 10 8 2 34 34 H 1.08994 * 109.46912 * 300.00271 * 11 10 8 35 35 H 1.09000 * 109.46646 * 60.00028 * 11 10 8 36 36 H 0.96704 * 114.00530 * 300.70161 * 13 12 11 37 37 H 1.09002 * 110.71933 * 271.94051 * 14 12 11 38 38 H 1.09002 * 110.71961 * 35.03486 * 14 12 11 39 39 H 1.09001 * 109.88143 * 97.22531 * 15 14 12 40 40 H 1.08994 * 109.88028 * 218.23213 * 15 14 12 41 41 H 0.96992 * 120.00078 * 180.02562 * 20 19 17 42 42 H 1.08992 * 110.36327 * 265.29138 * 25 16 15 43 43 H 1.08996 * 110.37091 * 142.96311 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 7 1.9852 -0.3913 3.7002 7 8 1.0118 1.0875 2.3632 8 6 2.0324 -0.7105 -1.2304 9 8 2.7296 -1.6966 -1.1191 10 7 1.7068 -0.2501 -2.4546 11 6 2.1956 -0.9405 -3.6507 12 6 1.6850 -0.2197 -4.9000 13 8 2.1648 1.1256 -4.9438 14 6 2.0772 -0.9923 -6.1871 15 6 0.9807 -0.5736 -7.1891 16 7 -0.1772 -0.1201 -6.4049 17 6 -1.3538 0.3543 -6.9203 18 1 -2.1480 0.6637 -6.2571 19 6 -1.5257 0.4376 -8.2952 20 7 -0.5575 0.0611 -9.1035 21 14 -3.1310 1.0842 -8.9983 22 1 -4.0511 1.4376 -7.8877 23 1 -2.8608 2.2907 -9.8209 24 1 -3.7574 0.0377 -9.8455 25 6 0.1380 -0.2610 -4.9716 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2057 31 1 2.4891 -1.2152 3.7908 32 1 1.7289 0.1099 4.4900 33 1 1.1488 0.5384 -2.5436 34 1 3.2855 -0.9401 -3.6505 35 1 1.8325 -1.9682 -3.6508 36 1 1.9025 1.6618 -4.1829 37 1 3.0606 -0.6809 -6.5392 38 1 2.0542 -2.0681 -6.0133 39 1 1.3439 0.2393 -7.8179 40 1 0.7008 -1.4251 -7.8094 41 1 -0.6775 0.1197 -10.0642 42 1 -0.2339 -1.2131 -4.5933 43 1 -0.2901 0.5664 -4.4058 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699903367.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:24 Heat of formation + Delta-G solvation = -139.063172 kcal Electronic energy + Delta-G solvation = -24851.578393 eV Core-core repulsion = 21123.772848 eV Total energy + Delta-G solvation = -3727.805544 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40477 -40.47184 -39.72521 -36.77456 -35.36774 -35.08096 -34.59390 -33.98664 -31.40377 -29.88208 -28.71457 -27.44355 -25.77072 -24.34667 -22.31522 -21.58066 -21.39760 -20.72257 -18.97561 -18.72539 -18.25779 -17.68660 -17.08374 -16.75334 -16.71318 -16.60028 -16.13449 -15.78017 -15.64077 -15.16572 -14.90858 -14.65919 -14.22457 -14.08022 -13.90379 -13.75457 -13.45926 -13.23803 -12.94582 -12.91274 -12.79541 -12.34678 -12.17501 -12.07728 -12.07103 -11.97486 -11.80070 -11.68064 -11.00356 -10.93933 -10.74173 -10.69197 -10.52959 -10.13477 -8.88348 -7.84671 -5.19985 1.46126 1.47211 1.57357 1.61437 1.67996 2.03826 2.49222 2.75288 3.18648 3.34513 3.48300 3.56157 3.66331 3.90141 3.94623 3.98664 4.01006 4.21006 4.44060 4.50719 4.60431 4.68386 4.70277 4.75485 4.83415 4.94530 4.96911 4.97897 5.09147 5.09491 5.34470 5.35327 5.44908 5.64474 5.77040 5.96537 6.19478 6.44524 6.50202 6.82319 7.09878 7.17869 7.39608 7.77236 8.41111 9.26276 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.003034 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.464980 B = 9226.174718 C =10012.125104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.111 0.889 4 C -0.121 4.121 5 C 0.518 3.482 6 N -0.839 5.839 7 O -0.582 6.582 8 C 0.523 3.477 9 O -0.574 6.574 10 N -0.718 5.718 11 C 0.119 3.881 12 C 0.121 3.879 13 O -0.554 6.554 14 C -0.121 4.121 15 C 0.189 3.811 16 N -0.621 5.621 17 C -0.239 4.239 18 H 0.085 0.915 19 C -0.070 4.070 20 N -0.953 5.953 21 Si 0.979 3.021 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.113 3.887 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.417 0.583 32 H 0.407 0.593 33 H 0.409 0.591 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.382 0.618 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.007 0.993 40 H 0.009 0.991 41 H 0.246 0.754 42 H 0.035 0.965 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 -2.460 24.713 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.129 0.871 4 C -0.161 4.161 5 C 0.304 3.696 6 N -0.403 5.403 7 O -0.462 6.462 8 C 0.310 3.690 9 O -0.454 6.454 10 N -0.370 5.370 11 C -0.005 4.005 12 C 0.079 3.921 13 O -0.360 6.360 14 C -0.159 4.159 15 C 0.064 3.936 16 N -0.347 5.347 17 C -0.368 4.368 18 H 0.103 0.897 19 C -0.262 4.262 20 N -0.602 5.602 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.221 1.221 24 H -0.220 1.220 25 C -0.013 4.013 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.248 0.752 32 H 0.239 0.761 33 H 0.246 0.754 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.231 0.769 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.025 0.975 40 H 0.027 0.973 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.260 -2.718 23.782 25.013 hybrid contribution -1.140 0.637 -0.229 1.326 sum 6.120 -2.081 23.553 24.424 Atomic orbital electron populations 1.21883 0.91968 1.02583 1.04037 1.20980 0.98435 1.01023 0.90606 0.87089 1.21440 1.04353 1.00175 0.90167 1.20743 0.77864 0.84766 0.86223 1.43746 1.59164 1.29930 1.07481 1.90720 1.41762 1.26375 1.87351 1.20913 0.79082 0.83962 0.85031 1.90680 1.39616 1.27778 1.87315 1.45893 1.53493 1.32399 1.05206 1.21731 0.99800 0.96504 0.82495 1.22419 0.92746 0.82915 0.94048 1.86611 1.77330 1.22444 1.49654 1.22793 0.99509 0.99778 0.93858 1.20824 0.85466 0.95731 0.91554 1.44649 1.13657 1.75234 1.01204 1.19497 0.91825 1.34628 0.90809 0.89693 1.25681 1.01432 1.02593 0.96535 1.70201 1.33312 1.54573 1.02107 0.84999 0.79040 0.76991 0.78234 1.18718 1.22133 1.22013 1.22359 0.93835 0.99079 0.86004 0.92426 0.90377 0.91457 0.87235 0.87130 0.75168 0.76138 0.75415 0.90371 0.90439 0.76866 0.89988 0.88613 0.97518 0.97282 0.94494 0.94751 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.83 71.98 0.64 -1.88 16 2 C -0.09 -1.50 2.37 -11.54 -0.03 -1.53 16 3 H 0.11 1.81 7.95 -2.39 -0.02 1.79 16 4 C -0.12 -1.67 4.52 29.85 0.13 -1.54 16 5 C 0.52 7.68 7.82 87.66 0.69 8.36 16 6 N -0.84 -5.94 8.87 -173.53 -1.54 -7.48 16 7 O -0.58 -13.28 14.80 -3.02 -0.04 -13.32 16 8 C 0.52 11.33 7.15 87.66 0.63 11.96 16 9 O -0.57 -15.97 15.92 -3.02 -0.05 -16.02 16 10 N -0.72 -14.97 5.07 -463.06 -2.35 -17.32 16 11 C 0.12 3.02 4.88 86.38 0.42 3.44 16 12 C 0.12 3.83 0.95 -9.40 -0.01 3.82 16 13 O -0.55 -17.90 13.19 -148.98 -1.96 -19.87 16 14 C -0.12 -4.42 6.16 31.78 0.20 -4.23 16 15 C 0.19 9.54 5.37 86.73 0.47 10.01 16 16 N -0.62 -31.64 3.39 -692.00 -2.35 -33.99 16 17 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16 18 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 20 N -0.95 -58.44 10.31 21.65 0.22 -58.22 16 21 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 25 C 0.11 4.25 5.98 86.86 0.52 4.77 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.52 5.95 -2.39 -0.01 1.50 16 28 H 0.07 1.07 7.56 -2.38 -0.02 1.05 16 29 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.39 7.96 -2.39 -0.02 1.37 16 31 H 0.42 0.56 8.83 -92.70 -0.82 -0.26 16 32 H 0.41 2.29 8.93 -92.71 -0.83 1.46 16 33 H 0.41 7.13 6.72 -92.71 -0.62 6.50 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.03 8.13 -2.39 -0.02 2.01 16 36 H 0.38 8.93 8.07 -74.05 -0.60 8.34 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.10 3.06 8.03 -2.39 -0.02 3.04 16 39 H 0.01 0.38 7.38 -2.39 -0.02 0.36 16 40 H 0.01 0.50 7.51 -2.39 -0.02 0.49 16 41 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.03 1.27 8.04 -2.39 -0.02 1.26 16 43 H 0.05 1.85 8.02 -2.39 -0.02 1.83 16 Total: -1.00 -78.99 350.02 -2.87 -81.85 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -1.80 Total: 19.03 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 4.98 Total: 17.16 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -6.01 Total: -117.01 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -2.06 Total: -49.21 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -78.99 -2.87 -81.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699903367.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.210 kcal (2) G-P(sol) polarization free energy of solvation -78.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds